LOCUS AY601636 1347 bp DNA linear VRL 12-APR-2006
DEFINITION Human adenovirus type 16 strain ch. 79, complete genome.
ACCESSION AY601636 REGION: complement(join(3945..5278,5557..5569))
VERSION AY601636.1 GI:57116031
KEYWORDS .
SOURCE Human adenovirus 16
 ORGANISM Human adenovirus 16
 Viruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus.
REFERENCE 1 (bases 1 to 1347)
 AUTHORS Lin,B., Wang,Z., Vora,G.J., Thornton,J.A., Schnur,J.M., Thach,D.C.,
 Blaney,K.M., Ligler,A.G., Malanoski,A.P., Santiago,J., Walter,E.A.,
 Agan,B.K., Metzgar,D., Seto,D., Daum,L.T., Kruzelock,R.,
 Rowley,R.K., Hanson,E.H., Tibbetts,C. and Stenger,D.A.
 TITLE Broad-spectrum respiratory tract pathogen identification using
 resequencing DNA microarrays
 JOURNAL Genome Res. 16 (4), 527-535 (2006)
 PUBMED 16481660
REFERENCE 2 (bases 1 to 1347)
 AUTHORS Tibbetts,C., Purkayastha,A., Su,J., Carlisle,S., Ospina,R.,
 Reynolds,T., Rowley,R., Hanson,E. and Seto,D.
 CONSRTM Epidemic Outbreak Surveillance (EOS)
 TITLE The complete nucleotide sequence and genome organization of Human
  Adenovirus Serotype 16
 JOURNAL Unpublished
REFERENCE 3 (bases 1 to 1347)
 AUTHORS Tibbetts,C., Purkayastha,A., Su,J., Carlisle,S., Ospina,R.,
 Reynolds,T., Rowley,R., Hanson,E. and Seto,D.
 CONSRTM Epidemic Outbreak Surveillance (EOS)
 TITLE Direct Submission
 JOURNAL Submitted (16-APR-2004) Modernization Directorate (SGR), USAF
 Surgeon General Office HQ, 5201 Leesburg Pike, Suite 1401, Falls
 Church, VA 22041, USA
FEATURES Location/Qualifiers
 source 1..1347
 /organism="Human adenovirus 16"
 /mol_type="genomic DNA"
 /strain="ch. 79"
 /serotype="16"
  /db_xref="taxon:31544"
 gene <13..>14
 /gene="E2B"
 CDS <13..>14
 /gene="E2B"
 /codon_start=1
 /product="DNA polymerase"
 /protein_id="AAW33432.1"
 /db_xref="GI:57116039"
 /translation="MALVQAHGAGSVHPEASDPGCQPPRRRACKSSQGAVPEPTRARR
 RRTTAGHAAGSRAAPAARCAPSTPLLNMQEATEPPPPKRKNKGTVVAPKGHGTLQAID
 ISTNGPVEIKYHLNLPHALEKIMQVNLLTLPTNLTPQRLRTLDSSDLRALVLELRPCR
 AEVWTCLPRGLVSMTTIETEDGHADADNIVEREVQAPGLNFPLKFLVKGSQVQLIHEV
 HPVNRCEYCGRLYKHKHECSARRREFYFHHINSHSSNWWQEIQFFPIGSHPRTERLFL
 TYDVETYTWMGSFGKQLIPFMLVMKLSGDQRLVNIAYDLAIKLKWDRWQQDPQTFYCV
 TPEKMAVGQHFRQYRDQLQTALAVDLWSSFLKANPHLHEWALEHYALTDPTDLTFEEL
 KKLPHVRGTPRFLELYIVGHNINGFDEIVLAAQVINNRAEVPQPFRITRNFMPRAGKI
 LFNDVTFALPNPAYKKRVDFQLWEQGACDDIDFKYQFLKVMVRDTFALTHTSLRNAAQ
 AYSLPVEKGCCPYKAVNQFYMLGSYRAEKDGFPLEEYWKDREEYLLNRELWEKKNQPR
 YDIIQETLDYCALDVLVTAELVAKLQESYAHFIRDSVGLPHAHFNIFQRPTISSNSHA
 IFRQIVYRAEKPNRTNLGPGLLAPSHELYDYVRASIRGGRCYPTYIGILEEPLYVYDI
 CGMYASALTHPMPWGTPLNPYERALAVREWQMTLDDPATISYFDKDLLPGIFTIDADP
 PDEFMLDPLPPFCSRKGGRLCWTNEPLRGEVATSVDLITLHNRGWRVRIVPDELTTIF
 PEWKCVAREYVQLNIAAKERADKEKNQTMRSIAKLLSNALYGSFATKLDNKKIVFSDQ
 MDESLMKGISAGTVNIKSSSFLETDNLSAEVMPAFEREYLPQQLALLDSDPEDSEDEQ
 RPAPFYTPPAGTPGHVAYTYKPITFLDVEEGDMCLHTVEKVDPLVDNDRYPSHVASFV
 LAWTRAFVSEWAGFLYEEDRGTPLEDRPIKSVYGDTDSLFVTQRGHELMETKGKKRIK
 KHGGKLVFDPDEPDLTWLVECETVCASCGADAYSPESIFLAPKLYALKCIYCPACHKT
 SKGKLRAKGHAAEALNYELMVNCYLADMQGADRQRFSTSRMSLKRTLASAQPGAHPFT
 VTETTLTRTLRPWKDRTLAALDAHRLIPYSRSRPNPRNEEVCWIEMP"
 gene <13..>14
 /gene="IVa2"
 CDS 1..1347
  /gene="IVa2"
 /codon_start=1
 /product="maturation protein IVa2"
 /protein_id="AAW33431.1"
  /db_xref="GI:57116038"
 /translation="METKGRRSAAVLDQQDESEAHPRKRPTRRAPLHRDGNNPDSDAA
 TMEGSDPGSAGRPSSDSLLQEPSQPAKRGGLLDRDAIEHITELWDRLELLQQTLSKMP
 MADGLKPLKNFSSLQELLSLGGERLLTDLVRENIHVREMMNEVAPLLREDGSCRSLNY
 HLQPVIGVIYGPTGCGKSQLLRNLLSSQLITPAPETVFFIAPQVDMIPPSELKAWEMQ
 ICEGNYAPGPEGTFIPQSGTLRPKFIKMAYDDLTQEHNYDVSDPRNVFARAAAHGPIA
 IIMDECMENLGGHKGVSKFFHAFPSKLHDKFPKCTGYTVLVVLHNMNPRRDLGGNIAN
 LKIQSKMHIISPRMHPSQLNRFVNTYTKGLPVAISLLLKDIVQHHALRPCYDWVIYNT
 TPEQEALQWSYLHPRDGLMPMYLNIQSHLYRVLEKIHRVLNDRDRWSRAYRARKIK"
ORIGIN 
 1 atggaaacca aagggcgccg atcggcagcg gttctcgacc agcaggatga gtctgaagcg
  61 caccctcgca agcgcccaac caggcgcgca ccccttcacc gtgacggaaa caaccctgac
 121 tcggacgctg cgaccatgga aggatcggac cctggcagcg ctggacgccc atcgtctgat
 181 tccctactcc aggagccgtc ccaacccgcg aaacgaggag gtctgctgga tcgagatgcc
 241 atagagcaca tcaccgagct ctgggaccgg ctcgagctct tgcaacagac tctttccaaa
 301 atgcccatgg ctgacgggct gaagccgctg aaaaacttct cctcgctcca ggagcttcta
 361 tcccttgggg gagagcgcct cctaacggac ttggtgcggg aaaatatcca tgtaagggaa
 421 atgatgaacg aagtggcccc cctgctccgg gaggacggca gctgtcgctc cctaaactac
 481 catctgcaac ccgtaattgg ggtcatttac ggtcccactg ggtgcggcaa gtctcagctg
 541 cttaggaatt tgctctcatc ccagttaatc accccggctc cagaaacagt attttttata
 601 gccccgcagg tggatatgat ccccccctct gaactgaaag cctgggaaat gcaaatatgt
 661 gagggaaact atgctcccgg gccagaggga actttcatcc cccaatctgg cacccttcgc
 721 ccaaagttta ttaaaatggc ttatgatgac ctgactcagg agcataacta tgatgtttca
 781 gacccccgga acgtgttcgc ccgtgccgct gcccacggcc ccatcgctat cattatggat
 841 gagtgcatgg agaatctggg gggtcacaaa ggcgtctcca aattttttca tgcttttccc
 901 tctaagctgc atgataaatt tcccaagtgc accggataca ctgtcttggt ggttctgcac
 961 aatatgaacc ccagacggga tctaggcggc aacattgcca acctcaagat ccagtccaaa
 1021 atgcatataa tttcaccccg gatgcacccg tcccagctca acagatttgt aaacacctac
 1081 actaagggcc tccccgttgc aattagtctg ctcctaaaag atattgtgca acaccatgca
 1141 ctccgacctt gctatgactg ggtgatttat aacactaccc cggagcaaga ggctcttcaa
 1201 tggagctatc tccacccccg ggacggacta atgcccatgt atctaaacat tcaatcccac
 1261 ctttacaggg tactggaaaa gatccaccga gttctcaatg atcgagaccg atggtccagg
 1321 gcataccgcg cgcgaaaaat caaataa
//