LOCUS AY601636 1977 bp DNA linear VRL 12-APR-2006
DEFINITION Human adenovirus type 16 strain ch. 79, complete genome.
ACCESSION AY601636 REGION: complement(join(8419..10386,13843..13851))
VERSION AY601636.1 GI:57116031
KEYWORDS .
SOURCE Human adenovirus 16
 ORGANISM Human adenovirus 16
 Viruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus.
REFERENCE 1 (bases 1 to 1977)
 AUTHORS Lin,B., Wang,Z., Vora,G.J., Thornton,J.A., Schnur,J.M., Thach,D.C.,
 Blaney,K.M., Ligler,A.G., Malanoski,A.P., Santiago,J., Walter,E.A.,
 Agan,B.K., Metzgar,D., Seto,D., Daum,L.T., Kruzelock,R.,
 Rowley,R.K., Hanson,E.H., Tibbetts,C. and Stenger,D.A.
 TITLE Broad-spectrum respiratory tract pathogen identification using
 resequencing DNA microarrays
 JOURNAL Genome Res. 16 (4), 527-535 (2006)
 PUBMED 16481660
REFERENCE 2 (bases 1 to 1977)
 AUTHORS Tibbetts,C., Purkayastha,A., Su,J., Carlisle,S., Ospina,R.,
 Reynolds,T., Rowley,R., Hanson,E. and Seto,D.
 CONSRTM Epidemic Outbreak Surveillance (EOS)
 TITLE The complete nucleotide sequence and genome organization of Human
 Adenovirus Serotype 16
 JOURNAL Unpublished
REFERENCE 3 (bases 1 to 1977)
 AUTHORS Tibbetts,C., Purkayastha,A., Su,J., Carlisle,S., Ospina,R.,
 Reynolds,T., Rowley,R., Hanson,E. and Seto,D.
 CONSRTM Epidemic Outbreak Surveillance (EOS)
 TITLE Direct Submission
 JOURNAL Submitted (16-APR-2004) Modernization Directorate (SGR), USAF
 Surgeon General Office HQ, 5201 Leesburg Pike, Suite 1401, Falls
 Church, VA 22041, USA
FEATURES Location/Qualifiers
 source 1..1977
 /organism="Human adenovirus 16"
 /mol_type="genomic DNA"
 /strain="ch. 79"
 /serotype="16"
 /db_xref="taxon:31544"
 gene <9..>10
 /gene="E2B"
 CDS join(1..9,1776..1977)
 /gene="E2B"
 /codon_start=1
 /product="DNA polymerase"
 /protein_id="AAW33432.1"
 /db_xref="GI:57116039"
 /translation="MALVQAHGAGSVHPEASDPGCQPPRRRACKSSQGAVPEPTRARR
 RRTTAGHAAGSRAAPAARCAPSTPLLNMQEATEPPPPKRKNKGTVVAPKGHGTLQAID
 ISTNGPVEIKYHLNLPHALEKIMQVNLLTLPTNLTPQRLRTLDSSDLRALVLELRPCR
 AEVWTCLPRGLVSMTTIETEDGHADADNIVEREVQAPGLNFPLKFLVKGSQVQLIHEV
 HPVNRCEYCGRLYKHKHECSARRREFYFHHINSHSSNWWQEIQFFPIGSHPRTERLFL
 TYDVETYTWMGSFGKQLIPFMLVMKLSGDQRLVNIAYDLAIKLKWDRWQQDPQTFYCV
 TPEKMAVGQHFRQYRDQLQTALAVDLWSSFLKANPHLHEWALEHYALTDPTDLTFEEL
 KKLPHVRGTPRFLELYIVGHNINGFDEIVLAAQVINNRAEVPQPFRITRNFMPRAGKI
 LFNDVTFALPNPAYKKRVDFQLWEQGACDDIDFKYQFLKVMVRDTFALTHTSLRNAAQ
 AYSLPVEKGCCPYKAVNQFYMLGSYRAEKDGFPLEEYWKDREEYLLNRELWEKKNQPR
 YDIIQETLDYCALDVLVTAELVAKLQESYAHFIRDSVGLPHAHFNIFQRPTISSNSHA
 IFRQIVYRAEKPNRTNLGPGLLAPSHELYDYVRASIRGGRCYPTYIGILEEPLYVYDI
 CGMYASALTHPMPWGTPLNPYERALAVREWQMTLDDPATISYFDKDLLPGIFTIDADP
  PDEFMLDPLPPFCSRKGGRLCWTNEPLRGEVATSVDLITLHNRGWRVRIVPDELTTIF
 PEWKCVAREYVQLNIAAKERADKEKNQTMRSIAKLLSNALYGSFATKLDNKKIVFSDQ
 MDESLMKGISAGTVNIKSSSFLETDNLSAEVMPAFEREYLPQQLALLDSDPEDSEDEQ
 RPAPFYTPPAGTPGHVAYTYKPITFLDVEEGDMCLHTVEKVDPLVDNDRYPSHVASFV
 LAWTRAFVSEWAGFLYEEDRGTPLEDRPIKSVYGDTDSLFVTQRGHELMETKGKKRIK
 KHGGKLVFDPDEPDLTWLVECETVCASCGADAYSPESIFLAPKLYALKCIYCPACHKT
 SKGKLRAKGHAAEALNYELMVNCYLADMQGADRQRFSTSRMSLKRTLASAQPGAHPFT
 VTETTLTRTLRPWKDRTLAALDAHRLIPYSRSRPNPRNEEVCWIEMP"
 CDS 1..1977
 /gene="E2B"
 /codon_start=1
 /product="terminal protein precursor"
 /protein_id="AAW33436.1"
 /db_xref="GI:57116043"
 /translation="MALSINDCARLTGQTVPTMNYFMPLRNIWNRVREFPRASTTASG
 ITWMSRYIYGYHRLMLEDLAPGAPATERWPLYRQPPPHFLIGYQYLVRTCNDYIFDTR
 AYSRLKYTEIVRPGHQTVNWSVMANCSYTINTGAYHRFVDFDDFQATLTQVQQAILAE
 RVVADLALVQPMRGFGITRMHGRAGEEEVPVERLMQDYYKDLARCQDNAWGMAHRLRI
 QQAGPKDLVLLATIRRLKTAYFNFITSSIVSPSKEEEGEERENPDRASSRPRPQETVL
 SLPCDCDWLDAFVERFSDPVDLETIRSLRGVPTGQLIKCIISAVSLPNGEPPSHHFRE
 MRGGVFTLRPRENGRAVTETMRRRRGEVIERFIDRLPVRRRRRRVPPPPAAPPEEEEM
 LVEEEEIEEEIPGAFEREVRTTIAELIRLLEEELTVSARNSQFFNFAVDFYEAMERLE
 ALGDVSEMPLRRWIMYFFVTEHIATTLNYLFQRLCNYAVFTRHVELNLAQVVMRARDP
 EGAVVYSRVWNEAGMNAFSQLIGRISNDLAATVERAGRGDLQEEEIEQFMAEIAYQDN
 SGDVQEILRQAAVNDTEIDSVELSFRFKLTGPVAFTQRRQIQDVNRRVVAHASLLRAQ
 YQNLPARGADVPLPAMPPGPEPPLPPGARPRHRF"
 CDS <1826..1977
 /inference="non-experimental evidence, no additional
  details recorded"
 /codon_start=1
 /product="hypothetical 12.6 kDa early protein"
 /protein_id="AAW33435.1"
 /db_xref="GI:57116042"
 /translation="MSTAASSRMQVFSGRSTRTYPRAAPTYHCRPCRRVPSRPCRPVR
 ALDTASKHARSNRATAAQTEKQGHGGSAQGARNPASHRHLHQRTRGDQVPSEPPSRPR
 KDHASQSPDTAY"
  CDS complement(<1974..1977)
 /codon_start=1
 /product="DNA binding agnoprotein"
 /protein_id="AAW33434.1"
 /db_xref="GI:57116041"
 /translation="MRANREELDLLPPVGGMAVDVMEVELPATRRAFMLVLVQTAAVL
 ASIHGMHLMNELYLTSFDEKFQWKIEAWRLYLALYYVVCIGMTIFCLDGGHADEPSRE
 ASPDLGAAGAELEDESAQVGAVQGPETLRSQVSRQCQEIDLHDLFEGVREVQMVLDLH
 GSVGGDVDGLQGSVPLGRYHRALVFPFGRRWLCCFLHV"
ORIGIN 
 1 atggccttga gcatcaacga ctgtgcgcgt ctcacgggcc aaaccgtgcc taccatgaac
 61 tacttcatgc cgctgcgcaa catctggaac cgcgtacgcg agttcccgcg ggcatccacc
 121 accgcctccg gtatcacctg gatgtccagg tacatctacg gttatcaccg cctcatgctg
 181 gaagacctcg cccctggcgc cccggctaca gagcgatggc ccctataccg ccagccgccg
 241 cctcactttc tcatcggcta ccagtacctg gtgcgcacct gtaacgatta catctttgac
 301 acccgcgcct actcgcgcct caagtacacc gagattgtgc gtccggggca ccagacagtc
 361 aactggtcag tcatggccaa ctgctcctac acaatcaaca ccggggctta ccaccgcttc
 421 gtggactttg acgacttcca agccaccctc acccaggtgc agcaagccat cctcgcagaa
 481 agggttgtag cggacctggc acttgtccag cccatgcgcg ggttcgggat cactcgcatg
 541 catggcagag cgggcgaaga agaagtgccc gtggaacgac tcatgcaaga ctactataaa
 601 gatctggcca gatgtcagga taatgcttgg ggaatggccc atcgcctgcg catccaacaa
 661 gccggaccca aagacctggt gctcctcgcc accatccgcc gtctcaaaac tgcctatttt
 721 aatttcatca ccagcagcat cgtctcaccc tccaaagagg aggaaggaga agaaagagag
 781 aaccccgacc gagcgtctag ccgcccccgc ccgcaagaaa cagtgctcag cctaccttgc
 841 gattgcgact ggttagacgc tttcgtcgaa aggttttcag atcccgtgga tcttgagacg
 901 atcaggtcct tgcgcggagt acctacgggg caattgataa aatgcataat cagcgcggtg
 961 tccctgccca acggagagcc tcccagtcac cacttcaggg agatgcgcgg aggcgtcttc
 1021 actctgagac ccagggagaa cggtcgtgcc gtcaccgaga ccatgcgccg ccgccgcgga
 1081 gaggtcattg aaagattcat cgaccgtctg cctgtgcgcc gccggcgtcg ccgcgttccc
 1141 cctcctcctg cagccccacc tgaagaggaa gagatgttag tggaagaaga agaaattgag
 1201 gaagaaatcc cgggggcttt cgagcgcgag gtgcgcacca ccatcgccga actcatccgt
 1261 cttctggaag aggagttgac cgtgtccgcg cgtaactccc agtttttcaa ctttgccgtg
 1321 gacttctacg aggccatgga gcgcttggaa gcgctgggcg atgttagcga gatgccgctg
 1381 agacgatgga tcatgtattt cttcgtcacc gagcacatcg ccaccacact caactacctt
 1441 ttccagcgcc tatgcaacta tgcggtcttc acccgccacg tggagctcaa cctcgcccag
 1501 gtggtcatgc gcgcgagaga tcccgagggg gctgtggtct acagccgcgt ctggaacgag
 1561 gcgggcatga atgcattctc tcaactcatt ggacgcatct ccaacgacct tgcggccacc
 1621 gtcgagagag cgggccgcgg agatcttcaa gaggaagaga tcgagcagtt catggccgag
 1681 atcgcctacc aggacaactc tggcgacgtg caagaaatcc ttaggcaagc cgccgtcaac
 1741 gataccgaga ttgattctgt tgaactctct ttcaggttca agctcacggg gccggtagcg
 1801 ttcacccaga ggcgtcagat ccaggatgtc aaccgccgcg tcgtcgcgca tgcaagtctt
 1861 ctcagggcgc agtaccagaa cctacccgcg cgcggcgccg acgtaccact gccggccatg
 1921 ccgccgggtc ccgagccgcc cctgccgccc ggtgcgcgcc ctcgacaccg cttctaa
//