LOCUS AY601636 3582 bp DNA linear VRL 12-APR-2006
DEFINITION Human adenovirus type 16 strain ch. 79, complete genome.
ACCESSION AY601636 REGION: complement(join(5048..8620,13843..13851))
VERSION AY601636.1 GI:57116031
KEYWORDS .
SOURCE Human adenovirus 16
 ORGANISM Human adenovirus 16
 Viruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus.
REFERENCE 1 (bases 1 to 3582)
 AUTHORS Lin,B., Wang,Z., Vora,G.J., Thornton,J.A., Schnur,J.M., Thach,D.C.,
 Blaney,K.M., Ligler,A.G., Malanoski,A.P., Santiago,J., Walter,E.A.,
 Agan,B.K., Metzgar,D., Seto,D., Daum,L.T., Kruzelock,R.,
 Rowley,R.K., Hanson,E.H., Tibbetts,C. and Stenger,D.A.
 TITLE Broad-spectrum respiratory tract pathogen identification using
 resequencing DNA microarrays
 JOURNAL Genome Res. 16 (4), 527-535 (2006)
 PUBMED 16481660
REFERENCE 2 (bases 1 to 3582)
 AUTHORS Tibbetts,C., Purkayastha,A., Su,J., Carlisle,S., Ospina,R.,
 Reynolds,T., Rowley,R., Hanson,E. and Seto,D.
 CONSRTM Epidemic Outbreak Surveillance (EOS)
 TITLE The complete nucleotide sequence and genome organization of Human
 Adenovirus Serotype 16
 JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3582)
 AUTHORS Tibbetts,C., Purkayastha,A., Su,J., Carlisle,S., Ospina,R.,
 Reynolds,T., Rowley,R., Hanson,E. and Seto,D.
 CONSRTM Epidemic Outbreak Surveillance (EOS)
 TITLE Direct Submission
 JOURNAL Submitted (16-APR-2004) Modernization Directorate (SGR), USAF
 Surgeon General Office HQ, 5201 Leesburg Pike, Suite 1401, Falls
 Church, VA 22041, USA
FEATURES  Location/Qualifiers
 source 1..3582
 /organism="Human adenovirus 16"
 /mol_type="genomic DNA"
 /strain="ch. 79"
 /serotype="16"
 /db_xref="taxon:31544"
 gene <9..>10
 /gene="E2B"
 CDS 1..3582
 /gene="E2B"
 /codon_start=1
 /product="DNA polymerase"
 /protein_id="AAW33432.1"
 /db_xref="GI:57116039"
 /translation="MALVQAHGAGSVHPEASDPGCQPPRRRACKSSQGAVPEPTRARR
 RRTTAGHAAGSRAAPAARCAPSTPLLNMQEATEPPPPKRKNKGTVVAPKGHGTLQAID
 ISTNGPVEIKYHLNLPHALEKIMQVNLLTLPTNLTPQRLRTLDSSDLRALVLELRPCR
 AEVWTCLPRGLVSMTTIETEDGHADADNIVEREVQAPGLNFPLKFLVKGSQVQLIHEV
 HPVNRCEYCGRLYKHKHECSARRREFYFHHINSHSSNWWQEIQFFPIGSHPRTERLFL
 TYDVETYTWMGSFGKQLIPFMLVMKLSGDQRLVNIAYDLAIKLKWDRWQQDPQTFYCV
 TPEKMAVGQHFRQYRDQLQTALAVDLWSSFLKANPHLHEWALEHYALTDPTDLTFEEL
 KKLPHVRGTPRFLELYIVGHNINGFDEIVLAAQVINNRAEVPQPFRITRNFMPRAGKI
 LFNDVTFALPNPAYKKRVDFQLWEQGACDDIDFKYQFLKVMVRDTFALTHTSLRNAAQ
 AYSLPVEKGCCPYKAVNQFYMLGSYRAEKDGFPLEEYWKDREEYLLNRELWEKKNQPR
 YDIIQETLDYCALDVLVTAELVAKLQESYAHFIRDSVGLPHAHFNIFQRPTISSNSHA
 IFRQIVYRAEKPNRTNLGPGLLAPSHELYDYVRASIRGGRCYPTYIGILEEPLYVYDI
 CGMYASALTHPMPWGTPLNPYERALAVREWQMTLDDPATISYFDKDLLPGIFTIDADP
  PDEFMLDPLPPFCSRKGGRLCWTNEPLRGEVATSVDLITLHNRGWRVRIVPDELTTIF
 PEWKCVAREYVQLNIAAKERADKEKNQTMRSIAKLLSNALYGSFATKLDNKKIVFSDQ
 MDESLMKGISAGTVNIKSSSFLETDNLSAEVMPAFEREYLPQQLALLDSDPEDSEDEQ
 RPAPFYTPPAGTPGHVAYTYKPITFLDVEEGDMCLHTVEKVDPLVDNDRYPSHVASFV
 LAWTRAFVSEWAGFLYEEDRGTPLEDRPIKSVYGDTDSLFVTQRGHELMETKGKKRIK
 KHGGKLVFDPDEPDLTWLVECETVCASCGADAYSPESIFLAPKLYALKCIYCPACHKT
 SKGKLRAKGHAAEALNYELMVNCYLADMQGADRQRFSTSRMSLKRTLASAQPGAHPFT
 VTETTLTRTLRPWKDRTLAALDAHRLIPYSRSRPNPRNEEVCWIEMP"
 CDS 1..>211
 /gene="E2B"
 /codon_start=1
 /product="terminal protein precursor"
 /protein_id="AAW33436.1"
 /db_xref="GI:57116043"
 /translation="MALSINDCARLTGQTVPTMNYFMPLRNIWNRVREFPRASTTASG
 ITWMSRYIYGYHRLMLEDLAPGAPATERWPLYRQPPPHFLIGYQYLVRTCNDYIFDTR
 AYSRLKYTEIVRPGHQTVNWSVMANCSYTINTGAYHRFVDFDDFQATLTQVQQAILAE
 RVVADLALVQPMRGFGITRMHGRAGEEEVPVERLMQDYYKDLARCQDNAWGMAHRLRI
 QQAGPKDLVLLATIRRLKTAYFNFITSSIVSPSKEEEGEERENPDRASSRPRPQETVL
 SLPCDCDWLDAFVERFSDPVDLETIRSLRGVPTGQLIKCIISAVSLPNGEPPSHHFRE
 MRGGVFTLRPRENGRAVTETMRRRRGEVIERFIDRLPVRRRRRRVPPPPAAPPEEEEM
 LVEEEEIEEEIPGAFEREVRTTIAELIRLLEEELTVSARNSQFFNFAVDFYEAMERLE
 ALGDVSEMPLRRWIMYFFVTEHIATTLNYLFQRLCNYAVFTRHVELNLAQVVMRARDP
 EGAVVYSRVWNEAGMNAFSQLIGRISNDLAATVERAGRGDLQEEEIEQFMAEIAYQDN
  SGDVQEILRQAAVNDTEIDSVELSFRFKLTGPVAFTQRRQIQDVNRRVVAHASLLRAQ
 YQNLPARGADVPLPAMPPGPEPPLPPGARPRHRF"
 CDS 60..404
 /inference="non-experimental evidence, no additional
 details recorded"
 /codon_start=1
 /product="hypothetical 12.6 kDa early protein"
 /protein_id="AAW33435.1"
  /db_xref="GI:57116042"
 /translation="MSTAASSRMQVFSGRSTRTYPRAAPTYHCRPCRRVPSRPCRPVR
 ALDTASKHARSNRATAAQTEKQGHGGSAQGARNPASHRHLHQRTRGDQVPSEPPSRPR
 KDHASQSPDTAY"
 CDS complement(208..804)
 /codon_start=1
 /product="DNA binding agnoprotein"
 /protein_id="AAW33434.1"
  /db_xref="GI:57116041"
 /translation="MRANREELDLLPPVGGMAVDVMEVELPATRRAFMLVLVQTAAVL
 ASIHGMHLMNELYLTSFDEKFQWKIEAWRLYLALYYVVCIGMTIFCLDGGHADEPSRE
 ASPDLGAAGAELEDESAQVGAVQGPETLRSQVSRQCQEIDLHDLFEGVREVQMVLDLH
 GSVGGDVDGLQGSVPLGRYHRALVFPFGRRWLCCFLHV"
 CDS complement(1213..1500)
 /inference="non-experimental evidence, no additional
 details recorded"
 /codon_start=1
 /product="hypothetical 10.4 kDa early protein"
 /protein_id="AAW33433.1"
 /db_xref="GI:57116040"
  /translation="MSEGKSVPDHDFEELILEVDVITGPLFPELEVHPLLVGGVGQSE
 SNIIEEDLAGPGHKISGDSERLRDLCSVIDNLSGQDDLIKAIDVVPHYVQF"
 TATA_signal complement(2756..2761)
 /note="major late promoter"
 gene  <3061..3582
 /gene="IVa2"
 CDS join(3061..3073,3352..3582)
 /gene="IVa2"
 /codon_start=1
 /product="maturation protein IVa2"
 /protein_id="AAW33431.1"
 /db_xref="GI:57116038"
 /translation="METKGRRSAAVLDQQDESEAHPRKRPTRRAPLHRDGNNPDSDAA
 TMEGSDPGSAGRPSSDSLLQEPSQPAKRGGLLDRDAIEHITELWDRLELLQQTLSKMP
 MADGLKPLKNFSSLQELLSLGGERLLTDLVRENIHVREMMNEVAPLLREDGSCRSLNY
 HLQPVIGVIYGPTGCGKSQLLRNLLSSQLITPAPETVFFIAPQVDMIPPSELKAWEMQ
 ICEGNYAPGPEGTFIPQSGTLRPKFIKMAYDDLTQEHNYDVSDPRNVFARAAAHGPIA
 IIMDECMENLGGHKGVSKFFHAFPSKLHDKFPKCTGYTVLVVLHNMNPRRDLGGNIAN
 LKIQSKMHIISPRMHPSQLNRFVNTYTKGLPVAISLLLKDIVQHHALRPCYDWVIYNT
 TPEQEALQWSYLHPRDGLMPMYLNIQSHLYRVLEKIHRVLNDRDRWSRAYRARKIK"
ORIGIN 
 1 atggccttgg ttcaagctca cggggccggt agcgttcacc cagaggcgtc agatccagga
 61 tgtcaaccgc cgcgtcgtcg cgcatgcaag tcttctcagg gcgcagtacc agaacctacc
 121 cgcgcgcggc gccgacgtac cactgccggc catgccgccg ggtcccgagc cgcccctgcc
 181 gcccggtgcg cgccctcgac accgcttcta aacatgcaag aagcaacaga gccaccgccg
 241 cccaaacgga aaaacaaggg cacggtggta gcgcccaagg ggcacggaac cctgcaagcc
 301 atcgacatct ccaccaacgg acccgtggag atcaagtacc atctgaacct ccctcacgcc
 361 ctcgaaaaga tcatgcaagt caatctcctg acactgccta ctaacctgac tccgcagcgt
 421 ctcaggaccc tggacagctc cgacctgcgc gctctcgtcc tcgagctccg cccctgccgc
 481 gccgaggtct ggacttgcct cccgcgaggg ctcgtcagca tgaccaccat cgagacagaa
 541 gatggtcatg ccgatgcaga caacatagta gagcgcgagg tacaagcgcc aggcctcaat
 601 tttccactga aatttctcgt caaaggaagt caggtacaac tcattcatga ggtgcatccc
 661 gtgaatcgat gcgagtactg cggccgtctg tacaagcaca agcatgaatg ctcggcgcgt
 721 cgcagggagt tctacttcca tcacatcaac agccattcct ccaactggtg gcaggagatc
 781 cagttcttcc cgattggctc tcatcctcgc acagaaaggc tcttcctcac ctacgatgtg
 841 gaaacctaca cctggatggg gtcctttggc aagcagctaa tccccttcat gctggtcatg
 901 aaactctctg gagaccagcg gctcgtcaac atcgcctatg acctggctat aaaactcaag
 961 tgggatcgct ggcagcagga cccccaaacc ttctattgcg tcaccccaga aaagatggca
 1021 gtcgggcagc attttcgtca gtaccgggac cagttacaaa cagcactggc agtggacctc
 1081 tggtcctcct tcctcaaagc gaaccctcac ctgcacgaat gggccctcga acactatgct
 1141 ctcactgacc ctacagacct cacttttgaa gaactcaaga agctgcctca tgtcaggggc
 1201 acacctcgat tcttagaact gtacatagtg gggcacaaca tcaatggctt tgatgagatc
 1261 gtcttggccg ctcaggttat caataaccga gcagaggtcc ctcagccttt cagaatcacc
 1321 cgaaatttta tgcccagggc cggcaagatc ctcttcaatg atgttacttt cgctttgccc
 1381 aaccccgcct acaagaagcg ggtggacttc caactctggg aacagggggc ctgtgatgac
 1441 atcgacttca agtatcaatt cctcaaagtc atggtcaggg acacttttgc cctcactcat
 1501 acctcgctgc gcaatgcagc ccaagcatac tctctcccag tggagaaggg atgctgtccc
 1561 tacaaggcag tcaatcaatt ctacatgttg ggctcttacc gtgcagaaaa agacgggttt
 1621 cccctcgaag agtactggaa ggatcgcgaa gaataccttc tcaaccgcga gctgtgggaa
 1681 aagaaaaacc aaccgcgtta tgacatcatc caggaaactc tcgactactg tgccctagac
 1741 gtacttgtca ccgccgagct ggtagccaag ctgcaagagt catatgccca cttcataagg
 1801 gactctgtag gcctccctca tgcccatttt aacatattcc agagacctac tatctcttcc
 1861 aattcccatg ccatctttcg ccagatcgtt tacagggcgg aaaaacccaa ccgcaccaat
 1921 ctgggcccgg gtcttctcgc cccctcacat gaactctatg actatgtgcg agcaagcatc
 1981 agaggggggc gctgttatcc cacttacatc ggcatcctcg aagagcccct ctatgtctac
 2041 gatatctgtg gcatgtatgc ctccgcgctc acccacccca tgccctgggg cacccctctt
 2101 aacccctatg agcgcgcgct ggcagttcga gaatggcaga tgactttgga tgatcccgcc
 2161 accatcagct attttgacaa ggatttgcta ccgggaatat ttaccataga tgcggacccc
 2221 cctgatgagt tcatgctaga ccccctcccc cctttctgtt caagaaaagg aggtcgactc
 2281 tgctggacca atgagcccct ccgaggcgag gtagccacca gtgtggatct gataaccctg
 2341 cacaataggg gatggcgagt cagaatagtt ccggatgaac tgacaaccat cttccctgaa
 2401 tggaaatgtg tggcgcgcga gtacgtccag cttaacatcg ccgccaagga gcgcgcggac
 2461 aaggaaaaga accaaaccat gcgctctatc gccaagcttc tatccaatgc cctctatgga
 2521 tcatttgcca ccaagctgga caacaagaag attgtgtttt ctgaccagat ggacgagagt
 2581 cttatgaaag gcatctctgc tggtactgtc aatatcaaat cctcctcgtt cctagaaact
 2641 gacaacctga gtgcagaggt catgcccgcc ttcgagaggg aatacctacc ccaacagctg
 2701 gcgctcctgg acagcgatcc ggaagacagt gaagacgaac agaggcccgc ccccttttat
 2761 acccccccgg cggggacccc tggtcacgtg gcctacactt acaagccaat cacattcttg
 2821 gatgtggagg agggggacat gtgtttacat accgtagaga aggtggaccc cctggttgac
 2881 aacgaccgct acccctccca cgtggcctcc tttgtgctgg cctggacacg cgcttttgta
 2941 tcagagtggg ctgggttcct ctacgaagag gaccgcggca ctccgctcga ggacaggccc
  3001 ataaagtcag tctacgggga cacggacagc ctctttgtta cccagcgggg acacgaactc
 3061 atggaaacca aaggtaagaa acgcatcaaa aaacatggcg gaaaacttgt ttttgacccc
 3121 gatgagccgg atctgacatg gctcgtggag tgcgaaaccg tctgcgcctc ctgcggtgcg
 3181 gatgcatact cccccgaatc cattttcctc gcgcccaagc tgtatgccct caaatgtatc
 3241 tactgccccg cctgccataa aacttccaaa ggtaagctcc gtgccaaagg ccacgcggcc
 3301 gaggcgctca actacgaact catggtaaac tgctacctgg ccgacatgca gggcgccgat
 3361 cggcagcggt tctcgaccag caggatgagt ctgaagcgca ccctcgcaag cgcccaacca
 3421 ggcgcgcacc ccttcaccgt gacggaaaca accctgactc ggacgctgcg accatggaag
 3481 gatcggaccc tggcagcgct ggacgcccat cgtctgattc cctactccag gagccgtccc
 3541 aacccgcgaa acgaggaggt ctgctggatc gagatgccat ag
//