LOCUS       AC_000006               3531 bp    DNA     linear   VRL 15-MAY-2008
DEFINITION  Human adenovirus D, complete genome.
ACCESSION   AC_000006 REGION: complement(join(4991..8512,13482..13490))
VERSION     AC_000006.1  GI:56160472
KEYWORDS    .
SOURCE      Human adenovirus D
  ORGANISM  Human adenovirus D
            Viruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus.
REFERENCE   1  (bases 1 to 3531)
  AUTHORS   Davison,A.J., Benko,M. and Harrach,B.
  TITLE     Genetic content and evolution of adenoviruses
  JOURNAL   J. Gen. Virol. 84 (Pt 11), 2895-2908 (2003)
   PUBMED   14573794
REFERENCE   2  (bases 1 to 3531)
  AUTHORS   Chillon,M., Bosch,A., Zabner,J., Law,L., Armentano,D., Welsh,M.J.
            and Davidson,B.L.
  TITLE     Group D adenoviruses infect primary central nervous system cells
            more efficiently than those from group C
  JOURNAL   J. Virol. 73 (3), 2537-2540 (1999)
   PUBMED   9971839
REFERENCE   3  (bases 1 to 3531)
  AUTHORS   Davison,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2002) MRC Virology Unit, Church Street, Glasgow
            G11 5JR, U.K.
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from BK000406.
            On Oct 3, 2005 this sequence version replaced gi:33694580.
            This record represents an alternative annotation for AF108105 /
            NC_002067.
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-35100             AF108105.1         1-35100
FEATURES             Location/Qualifiers
     source          1..3531
                     /organism="Human adenovirus D"
                     /mol_type="genomic DNA"
                     /serotype="Human adenovirus type 17"
                     /db_xref="taxon:130310"
                     /note="Human adenovirus D"
     CDS             1..3531
                     /codon_start=1
                     /product="pol"
                     /protein_id="AP_000143.1"
                     /db_xref="GI:56160474"
                     /translation="MALVQSHGASGLHAEAADPGCQPPRRRARQRSQGATPGPARAPR
                     RRASAAPARGAGTAAAAGSASATPLLKAHRGTVVAPRSYGLMQCVDTATNSPVEIKYH
                     LHLKHALTRLYEVNLRTLPPDLDLRDTMDSSQLRALVFALRPRRAEIWTWLPRGLVSL
                     SVLEEPQGESHAGEHENHQPGPPLLKFLLKGRAVYLVDEVQPVQRCEYCGRFYKHQHE
                     CSVRRRDFYFHHINSHSSNWWQEIQFFPIGSHPRTERLFVTYDVETYTWMGSFGKQLV
                     PFMLVMKFSGDPELVALARDLAARLRWDRWERDPLTFYCVTPEKMAVGQQFRLFRDEL
                     QTLMARELWASFMQANPHLQEWALEQHGLQCPEDLTYEELKKLPHIKGRPRFMELYIV
                     GHNINGFDEIVLAAQVINNRASVPGPFRITRNFMPRAGKILFNDVTFALPNPLSKKRT
                     DFELWEHGGCDDSDFKYQFLKVMVRDTFALTHTSLRKAAQAYALPVEKGCCPYKAVNH
                     FYMLGSYRADDRGFPLREYWKDDEEYALNRELWEKKGEAGYDIIRETLDYCAMDVLVT
                     AEFVAKLQDSYAHFIRDSVRLPHAHFNIFQRPTISSNSHAIFRQIVFRAEQPQRTNFG
                     PGLLGPSHELYEYVRASIRGGRCYPTNIGIFSEPIYVYDICGMYASALTHPMPWGPPL
                     NPYERAMAAREWQMALDDASSKIDYFDKKLCPGIFTIDADPPDEHLLDVLPPFCSRKG
                     GRLCWTNEPLRGEVATSVDLVTLHNRGWRVRIVPDERTTVFPEWKCVAREYVQLNIAA
                     KERADRDKNQTMRSIAKLLSNALYGSFATKLDNKKIVFSDQMDESLLKSIAAGQANIK
                     SSSFLETDNLSAEVMPALEREYLPQQLALVDSDAEESEDEHRPAPFYTPPSGTPGHVA
                     YTYKPITFLDAEEGDMCLHTVEKVDPLVDNDRYPSHVASFVLAWTRAFVSEWSEFLYE
                     EDRGTPLQDRPIKSVYGDTDSLFVTERGHRLMETRGKKRIKKNGGKLVFDPEQPELTW
                     LVECETVCAHCGADAFAPESVFLAPKLYALQSLLCPACGRSSKGKLRAKGHAAEALNY
                     ELMVNCYLADAQGEDRARFSTSRMSLKRTLASAQPGAHPFTVTETTLTRTLRPWKDMT
                     LAALDAHRLVPYSRSRPNPRNEEVCWIEMP"
     CDS             1..>211
                     /codon_start=1
                     /product="pTP"
                     /protein_id="AP_000144.1"
                     /db_xref="GI:56160475"
                     /translation="MALSVNDCARLTGQTVPTMDYFLPLRNIWNRVREFPRASTTAAG
                     ITWMSRYLYGYHRLMLEDLAPGAPATQRWPLYRQPPPHFLVGYQYLVRTCNDYVFDSR
                     AFSRLRYSEVVQPGLQTVNWSLMANCTYTINTGAYHRFVDMDDFQDTLTRVQQAILAE
                     RVVADLALVQPLRGVGVTRMEDSASASDDIERLMHDYYKNLSRCQGQAWGMAERLRIQ
                     QAGPKDLVLLATIRRLKNAYFNYIISNRNSNSVHRAATCLSLPCDCDWLDAFLERFSD
                     PVDLDALTSPTPQLIRCIVSALSLPNGDPPHYREMTGGVFTLRPRERGRAVTETMRRR
                     RGEMIERFVDRLPVRRRRRRAPPPPPPPEEEIEEVVMEEEEEDEAPGDFEREVRATIA
                     ELIRLLEDELTVSARNAQFFNFAVDFYEAMERLEAIGDISEMPLRRWIMYFFVTEHIA
                     TTLNYLFQRLRNYAVFARHVELNLAQVVMRARDADGDVVYSRVWNESGLGAFSQLMGR
                     ISNDLAATVERAGRGDLQEEEIEQFMSEIAYQDNSGDVQEILRQPAVNDAEIDSVELS
                     FRFKVTGPVVFTQRRQIQDVNRRVVAHASALRAQHRDLPERHADVPLPPLPAGPEPPL
                     PPGARPRHRF"
     misc_feature    complement(<3010..3531)
                     /note="nonfunctional IVa2 due to frameshift"
ORIGIN      
        1 atggccttgg ttcaaagtca cggggccagt ggtcttcacg cagaggcggc agatccagga
       61 tgtcaaccgc cgcgtcgtcg cgcacgccag cgctctcagg gcgcaacacc gggacctgcc
      121 cgagcgccac gccgacgtgc ctctgccgcc cctgcccgcg gggccggaac cgccgctgcc
      181 gccgggagcg cgtccgcgac accgcttcta aaagcgcacc gcggcacggt cgtggccccg
      241 cgcagctacg ggctcatgca atgcgtggac acggccacca actcacccgt agaaatcaag
      301 taccatctgc atctcaagca cgccctcacc cgcctctacg aggtcaacct cagaaccctg
      361 cccccggacc tggatctccg cgacaccatg gacagctccc aactgcgcgc cctcgtcttc
      421 gctctccgcc cccgccgcgc cgagatctgg acctggctcc cgcgcgggct cgtcagcctc
      481 tccgtcctcg aggagcccca gggtgagtcc cacgcaggcg aacatgaaaa ccaccagcca
      541 gggccgccac tcctgaagtt cctcctcaag ggacgcgctg tgtatctcgt ggatgaggta
      601 cagcccgtgc agcgctgcga gtactgcgga cgcttttaca agcatcagca cgagtgctcg
      661 gttcgccggc gggatttcta ctttcatcac atcaacagcc actcgtccaa ctggtggcag
      721 gaaatccagt tcttcccaat cggctctcat cctcgcacgg agcggctctt tgtcacctac
      781 gatgtagaaa cctacacctg gatggggtcc ttcggcaagc agctcgtccc cttcatgctg
      841 gtcatgaaat tctcggggga cccagagctg gtcgcccttg ctcgcgatct agccgcgcgc
      901 ttacgctggg atcgctggga gcgggacccc ctcaccttct actgcgtcac acccgaaaag
      961 atggccgtgg gccagcagtt ccgcctcttt cgcgacgagc tccagaccct catggcccgc
     1021 gagctctggg cttccttcat gcaagccaac ccacatctcc aggaatgggc gctcgagcag
     1081 cacggcctgc aatgccccga ggacctcacc tacgaggagc tcaaaaagct gccgcacatc
     1141 aaaggccgcc cgcgattcat ggaactctac atcgtcgggc acaacatcaa cggcttcgac
     1201 gagatcgtcc tcgccgccca ggtcatcaac aaccgagcct ccgtcccggg ccctttccgc
     1261 atcacccgca atttcatgcc gcgagcaggc aagattctct tcaatgacgt cactttcgct
     1321 ctgcctaacc ccctctcgaa gaagcgcacc gatttcgagc tatgggagca cggcggctgc
     1381 gacgactcgg atttcaagta ccagttcttg aaagtcatgg tcagggacac cttcgccctg
     1441 acgcacacct cgctccgcaa ggccgcacaa gcttacgccc tccccgtgga gaagggctgc
     1501 tgtccctaca aggccgtgaa ccatttctac atgctgggct cttaccgtgc ggacgatcga
     1561 ggattcccgc tccgggagta ctggaaggat gacgaggaat acgccctcaa ccgcgagctg
     1621 tgggagaaga aaggagaggc gggttatgac atcatccgcg aaacgctgga ctactgcgcc
     1681 atggacgttc tcgtcaccgc cgagttcgtc gccaagctgc aagactccta cgcgcacttc
     1741 atccgcgact cggtccgctt gccccacgcc cactttaaca tcttccaacg gcccaccatc
     1801 tcctccaact cgcacgccat ctttcgccag attgttttcc gcgccgagca gccccagcgc
     1861 accaatttcg gccccggcct tcttggcccc tcgcacgagt tgtatgaata cgtgcgcgcc
     1921 agcatccgcg gggggcgctg ttatcccacc aacatcggca tcttctcgga gcccatctat
     1981 gtttacgaca tttgcggcat gtacgcctcc gccctcacgc atcccatgcc gtggggtccg
     2041 cccctcaacc cctacgagcg agcaatggcc gcccgcgagt ggcagatggc cttggatgat
     2101 gcatcctcaa aaatagacta ttttgacaag aaactctgtc ccggcatctt caccatcgat
     2161 gcggaccccc ctgacgagca tctgcttgat gtgctgcccc cgttctgctc gcgcaagggc
     2221 ggcagactct gctggactaa cgagcccctg cgcggcgagg tggccaccag cgtggacctg
     2281 gtcaccctgc ataaccgcgg ctggcgcgtc aggatcgtgc ccgacgagcg caccaccgtc
     2341 tttcccgaat ggaagtgtgt cgcgcgcgaa tatgtccagc tcaacatcgc ggccaaggag
     2401 cgcgccgacc gtgacaaaaa tcagaccatg agatccatcg ccaagcttct ctccaacgcc
     2461 ctctatggct cctttgccac caagcttgac aataaaaaaa tagtcttttc tgaccagatg
     2521 gatgaaagtc tcctaaaaag cattgcggca gggcaagcca acatcaaatc ctcctcgttt
     2581 ctagaaactg acaacctgag tgccgaggtc atgcccgctc tcgagaggga atacctaccc
     2641 caacagctgg cgctcgtgga cagcgacgcg gaagagagtg aggacgagca cagacccgcc
     2701 cccttttata cccccccgtc ggggacccct ggtcacgtgg cctacaccta caagccaatc
     2761 accttcttgg atgcggagga aggggacatg tgtctgcaca cggtggaaaa ggtggacccc
     2821 ctggtggaca acgaccgcta cccctcgcac gtggcctcct ttgtcttggc gtggacgcgc
     2881 gcctttgtct cagagtggtc cgagtttctc tacgaggagg accgcgggac gcccctgcag
     2941 gacaggccaa tcaagtccgt ctacggggac accgacagcc tgtttgtcac cgagcgcgga
     3001 cacagactca tggagacgcg aggtaagaag cgcatcaaaa agaacggggg aaaactggtt
     3061 tttgaccccg agcagcccga gctcacctgg ctcgtcgagt gcgagaccgt ctgcgcccac
     3121 tgcggagcgg acgcttttgc tcccgagtcg gtctttcttg cgcccaagct ctacgccctg
     3181 caatccctcc tctgtcccgc ctgcggacgc tcttccaagg gcaagctccg cgccaagggc
     3241 cacgccgccg aggccctcaa ctacgagctc atggtcaact gctatctcgc cgacgcgcag
     3301 ggcgaagacc gtgcccgttt cagcaccagc aggatgagtc tcaagcgcac ccttgcaagc
     3361 gcccagccag gggcccaccc cttcaccgtg acggagacca ccctcacgcg gaccctgaga
     3421 ccctggaagg acatgacgct ggccgcgctg gacgcccatc gtctcgtgcc ctacagtcgc
     3481 agtcgtccca acccccgaaa cgaggaagtc tgctggatcg agatgccgta g
//