LOCUS AJ854486 3276 bp DNA linear VRL 14-NOV-2006
DEFINITION Human adenovirus type 9 complete genome.
ACCESSION AJ854486 REGION: 5002..8277
VERSION AJ854486.1 GI:56237058
KEYWORDS 39.3 kDa fiber protein; 71.1 kDa preterminal protein; core protein
L2 pX; DNA binding protein; E1A 14.9 kDa protein; E1A 21.1 kDa
protein; E1A 28.2 kDa protein; E1A gene; E1B 19k protein; E1B 55k
gene; E1B 55k protein; E1B gene; E2A DBP gene; E3 10.4 K gene; E3
12.2 K gene; E3 12.2 kDa protein; E3 14.5 K gene; E3 14.5 kDa
protein; E3 14.8 K gene; E3 14.8 kDa protein; E3 18.4 K gene; E3
18.4 kDa protein; E3 21.8 K gene; E3 21.8 kDa protein; E3 33.1 K
gene; E3 45.8 K gene; E3 45.8 kDa protein; E3 9.0 K gene; E3 9.6 K
gene; E3 orf 4 10.4 kDa protein; E3 orf1 9.0 kDa protein; E3 orf2
9.6kDa protein; E3 orf3 33.1 kDa protein; E4 13.6 K gene; E4 14.0 K
gene; E4 14.2 K gene; E4 14.5 K gene; E4 17 K gene; E4 17.0 kDa; E4
34.1 K gene; E4 orf 3 13.6 kDa protein; E4 orf1 14.0 kDa protein;
E4 orf2 14.5 kDa protein; E4 orf4 14.2 kDa protein; E4 orf6 34.1
kDa protein; hexon protein; L1 52/55k 42.2 kDa protein; L1 52/55k
gene; L1 pIIIa 62.1 kDa protein; L1 pIIIa gene; L2 pV gene; L2 pVII
gene; L2 pX gene; L2-pIII gene; L3 23.6 kDa protease; L3 gene; L3
pII gene; L3 pVI gene; L3 pVI protein; L4 100k gene; L4 100kDa
protein; L4 22k gene; L4 22kDa protein; L4 pVIII gene; L4 pVIII
protein; L5 pIV gene; major core protein L2 pVII; minor core
protein L2 pV; penton; pIVa2 gene; pIVa2 protein; pIX gene; pIX
protein; polymerase; pTP gene; VAI RNA; VAII RNA.
SOURCE Human adenovirus 9
ORGANISM Human adenovirus 9
Viruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus;
Human adenovirus D.
REFERENCE 1
AUTHORS Buettner,W.H. and Veres-Molnar,S.K.
TITLE Adenovirus type 9, complete sequence
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3276)
AUTHORS Buettner,W.H.
TITLE Direct Submission
JOURNAL Submitted (07-NOV-2004) Buettner W.H., Special Medical
Microbiology, Georg-August-University Goettingen, Humboldtallee 34,
37073 Goettingen, GERMANY
FEATURES Location/Qualifiers
source 1..3276
/organism="Human adenovirus 9"
/virion
/mol_type="genomic DNA"
/strain="type strain: ATCC VR-1086 = Hicks = NIAID
V-209-003-014"
/serotype="9"
/db_xref="taxon:10527"
gene complement(<1..>522)
/gene="pIVa2"
mRNA complement(join(<1..231,510..>522))
/gene="pIVa2"
CDS complement(join(<1..231,510..522))
/gene="pIVa2"
/codon_start=1
/product="pIVa2 protein"
/protein_id="CAI05959.1"
/db_xref="GI:56237065"
/db_xref="GOA:Q5TJ14"
/db_xref="InterPro:IPR003389"
/db_xref="InterPro:IPR003593"
/db_xref="UniProtKB/TrEMBL:Q5TJ14"
/translation="METRGRRPCPFQHQQDESQAHPCKRPARGPPLHRDGDHPHSDPE
TLEGHDAGRAGRPSSRALQSQSSQPPKRGSLLDRDAVEHVTELWDRLELLSQTLAKMP
MADGLKPLKNFASLQELLSLGGDRLLGELVRENLQVRDMLNEVAPLLRDDGSCMSLNY
HLQPVIGVIYGPTGCGKSQLLRNLLSSQLITPAPETVFFIAPQVDMIPPSEMKAWEMQ
ICEGNFAPGPEGTIVPQSGTLRPKFIKMSYDDLTQEHNYDVSDPRNVFAKAAAHGPIA
IIMDECMENLGGHKGVSKFFHAFPSKLHDKFPKCTGYTVLVVLHNMNPRRDLGGNIAN
LKIQAKLHIISPRMHPSQLNRFANTYTKGLPVAISLLLKDIIQHHAQRPCYDWIIYNT
TPEHEAMQWCYLHPRDGLMPMYLNIQSHLYRVLEKIHRTLNDRERWTRAYRARKNK"
exon complement(<1..231)
/gene="pIVa2"
/number=2
CDS complement(1..3276)
/codon_start=1
/product="polymerase"
/protein_id="CAI05960.1"
/db_xref="GI:56237066"
/db_xref="GOA:Q5TJ13"
/db_xref="InterPro:IPR004868"
/db_xref="InterPro:IPR006172"
/db_xref="InterPro:IPR012337"
/db_xref="UniProtKB/TrEMBL:Q5TJ13"
/translation="MQCVDTTTNSPVEIKYHLHLKHALTRLYEVNLRTLPPDLDLRDT
MDSSQLRALVFALRPRRAEIWTWLPRGLVSLSVLEEPQGESHAGEHESHQPGPPLLKF
LLKGRAVYLVDEVQPVQRCEYCGRFYKHQHECSVRRRDFYFHHINSHSSNWWQEIQFF
PIGSHPRTERLFVTYDVETYTWMGSFGKQLVPFMLVMKFSGEPELVALARDLAVRLRW
DRWERDPLTFYCVTPEKMAVGQQFRLFRDELQTLMARELWASFMQANPHLQEWALEQH
GLQCPEDLTYEELKKLPHIKGRPRFMELYIVGHNINGFDEIVLAAQVINNRASVPGPF
RITRNFMPRAGKILFNDVTFALPNPLSKKRTDFELWEHGGCDDSDFKYQFLKVMVRDT
FALTHTSLRKAAQAYALPVEKGCCPYKAVNHFYMLGSYRADDRGFPLREYWKDDEEYA
LNRELWEKKGEAGYDIIRETLDYCAMDVLVTAELVAKLQDSYAHFIRDSVRLPHAHFN
IFQRPTISSNSHAIFRQIVFRAEQPQRTNLGPAFLAPSHELYDYVRASIRGGRCYPTY
IGILSEPIYVYDICGMYASALTHPMPWGPPLNPYERALAAREWQMALDDASSKIDYFD
KELCPGIFTIDADPPDEHLLDVLPPFCSRKGGRLCWTNEPLRGEVATSVDLVTLHNRG
WRVRIVPDERTTVFPEWKCVAREYVQLNIAAKERADRDKNQTMRSIAKLLSNALYGSF
ATKLDNKKIVFSDQMDESLLKSIAAGQANIKSSSFLETDNLSAEVMPALEREYLPQQL
ALVDSDAEESEDEHRPAPFYTPPSGTPGHVAYTYKPITFLDAEEGDMCLHTVEKVDPL
VDNDRYPSHVASFVLAWTRAFVSEWSEFLYEEDRGTPLQDRPIKSVYGDTDSLFVTER
GHRLMETRGKKRIKKNGGKLVFDPEQPELTWLVECETVCAHCGADAFAPESVFLAPKL
YALQSLLCPACGRSSKGKLRAKGHAAEALNYELMVNCYLADSQGEDRARFSTSRMSLK
RTLASAQPGAHPFTVTETTLTRTLRPWKDMTLAALDAHRLVPYSRSRPNPRNEEVCWI
EMP"
intron complement(232..509)
/gene="pIVa2"
/number=1
exon complement(510..>522)
/gene="pIVa2"
/number=1
TATA_signal 822..825
/note="major late promoter"
misc_feature 853..893
/note="tripartite leader sequence; 1st leader"
misc_feature 1915..1986
/note="tripartite leader sequence; 2nd leader"
ORIGIN
1 ctacggcatc tcgatccagc agacttcctc gtttcggggg ttgggacgac tgcgactgta
61 gggcacgaga cgatgggcgt ccagcgcggc cagcgtcatg tccttccagg gtctcagggt
121 ccgagtgagg gtggtctccg tcacggtgaa ggggtgggcc cctggctggg cgcttgcaag
181 ggtgcgcttg agactcatcc tgctggtgct gaaacgggca cggtcttcgc cctgcgagtc
241 ggcgagatag cagttgacca tgagctcgta gttgagggcc tcggcggcgt ggcccttggc
301 gcggagcttg cccttggaag agcgcccgca ggcgggacag aggagggatt gcagggcgta
361 gagcttgggg gcgagaaaga cggactcggg agcgaaagcg tccgctccgc agtgggcgca
421 gacggtctcg cactcgacga gccaggtgag ctctggctgc tcggggtcaa aaaccagttt
481 tcccccgttc tttttgatgc gcttcttacc tcgcgtctcc atgagtctgt gtccgcgctc
541 ggtgacaaac aggctgtcgg tgtccccgta gacggacttg attggcctgt cctgcagggg
601 cgtcccgcgg tcctcctcgt agagaaactc ggaccactct gagacaaagg cgcgcgtcca
661 cgccaagaca aaggaggcca cgtgcgaggg gtagcggtcg ttgtccacta gggggtccac
721 cttttccacc gtgtgcagac acatgtcccc ctcctccgca tccaagaagg tgattggctt
781 gtaggtgtag gccacgtgac cgggggtccc cgacgggggg gtataaaagg gggcgggtct
841 gtgctcgtcc tcactctctt ccgcgtcgct gtccacgagc gccagctgtt ggggtaggta
901 ttccctctcg agagcgggca tgacctcggc actcaggttg tcagtttcta gaaacgagga
961 ggatttgatg ttggcttgcc ctgccgcgat gctttttagg agactttcat ccatctggtc
1021 agaaaagact atttttttat tgtcaagctt ggtggcgaag gagccataga gggcgttgga
1081 tagaagcttg gcgatggatc tcatggtctg atttttgtca cggtcggcgc gctccttggc
1141 cgcgatgttt agctggacat actcgcgcgc gacgcacttc cattcgggga agacggtggt
1201 gcgctcgtcg ggcacgatcc tgacgcgcca gccgcggtta tgcagggtga ccaggtccac
1261 gctggtggcc acctcgccgc gcaggggctc gttggtccag cagagtctgc cgcccttgcg
1321 cgagcagaac gggggcagca catcaagcag atgctcgtca ggggggtccg catcgatggt
1381 gaagatgccc ggacagagtt ccttgtcaaa ataatcgatt tttgaggatg catcatccaa
1441 ggccatctgc cactcgcggg cggccagcgc tcgctcgtag gggttgaggg gcggacccca
1501 gggcatggga tgagtgaggg cggaggcgta catgccgcag atgtcgtaga catagatggg
1561 ctccgagagg atgccgatgt aggtgggata acagcgcccc ccgcggatgc tggcgcgcac
1621 gtagtcatac aactcgtgcg agggggccaa gaaggcgggg ccgagattgg tgcgctgggg
1681 ctgctcggcg cggaagacga tctggcgaaa gatggcgtgc gagttggagg agatggtggg
1741 ccgttggaag atgttaaagt gggcgtgggg caagcggacc gagtcgcgga tgaagtgcgc
1801 gtaggagtct tgcagcttgg cgacgagctc ggcggtgacg aggacgtcca tggcgcagta
1861 gtccagcgtt tcgcggatga tgtcataacc cgcctctcct ttcttctccc acagctcgcg
1921 gttgagggcg tactcctcgt catccttcca gtactcccgg agcgggaatc ctcgatcgtc
1981 cgcacggtaa gagcccagca tgtagaaatg gttcacggcc ttgtagggac agcagccctt
2041 ctccacgggg agggcgtaag cttgagcggc cttgcggagc gaggtgtgcg tcagggcgaa
2101 ggtgtccctg accatgactt tcaagaactg gtacttgaaa tccgagtcgt cgcagccgcc
2161 gtgctcccag agctcgaaat cggtgcgctt cttcgagagg gggttaggca gagcgaaagt
2221 gacgtcattg aagagaatct tgcctgctcg cggcatgaaa ttgcgggtga tgcggaaagg
2281 gcccgggacg gaggctcggt tgttgatcac ctgggcggca aggacgatct cgtcgaagcc
2341 gttgatgttg tgcccgacga tgtagagttc catgaatcgc gggcggcctt tgatgtgcgg
2401 cagctttttg agctcctcgt aggtgaggtc ctcggggcat tgcaggccgt gctgctctag
2461 cgcccactcc tggagatgtg ggttggcttg catgaaggaa gcccagagct cgcgggccat
2521 gagggtctgg agctcgtcgc gaaagaggcg gaactgctgg cccacggcca tcttttctgg
2581 ggtgacgcag tagaaggtga gggggtcccg ctcccagcga tcccagcgta agcgcacggc
2641 gagatcgcga gcgagggcga ccagctcggg ttcccccgag aatttcatga ccagcatgaa
2701 ggggacgagc tgcttgccga aggaccccat ccaggtgtag gtttctacat cgtaggtgac
2761 aaagagccgc tccgtgcgag gatgagagcc gattgggaag aactggattt cctgccacca
2821 gttggacgag tggctgttga tgtgatgaaa gtagaaatcc cgccggcgaa ccgagcactc
2881 gtgctgatgc ttgtaaaagc gtccgcagta ctcgcagcgc tgcacgggct gtacctcatc
2941 cacgagatac acagcgcgtc ccttgaggag gaacttcagg agtggcggcc ctggctggtg
3001 gctttcatgt tcgcctgcgt gggactcacc ctggggctcc tcgaggacgg agaggctgac
3061 gagcccgcgc gggagccagg tccagatctc ggcgcggcgg gggcggagag cgaagacgag
3121 ggcgcgcagt tgggagctgt ccatggtgtc gcggagatcc aggtccgggg gcagggttct
3181 gaggttgacc tcgtagaggc gggtgagggc gtgcttgaga tgcagatggt acttgatctc
3241 cacgggtgag ttggtggtcg tgtccacgca ttgcat
//