LOCUS L19443 1941 bp DNA linear VRL 14-AUG-2003
DEFINITION Human adenovirus F, complete genome.
ACCESSION L19443 REGION: complement(join(8106..10037,13180..13188))
VERSION L19443.1 GI:303969
KEYWORDS .
SOURCE Human adenovirus F
ORGANISM Human adenovirus F
Viruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus.
REFERENCE 1 (bases 1 to 1941)
AUTHORS van Loon,A.E., Ligtenberg,M., Reemst,A.M., Sussenbach,J.S. and
Rozijn,T.H.
TITLE Structure and organization of the left-terminal DNA regions of
fastidious adenovirus types 40 and 41
JOURNAL Gene 58 (1), 109-126 (1987)
PUBMED 2961652
REFERENCE 2 (bases 1 to 1941)
AUTHORS Ishino,M., Sawada,Y., Yaegashi,T., Demura,M. and Fujinaga,K.
TITLE Nucleotide sequence of the adenovirus type 40 inverted terminal
repeat: close relation to that of adenovirus type 5
JOURNAL Virology 156 (2), 414-416 (1987)
PUBMED 3811242
REFERENCE 3 (bases 1 to 1941)
AUTHORS Ishino,M.
TITLE Analysis of structure and function of human adenovirus type 40
leftmost 1.85 kb region including transforming E1A gene
JOURNAL Sapporo Igaku Zasshi 57, 59-66 (1988)
REFERENCE 4 (bases 1 to 1941)
AUTHORS Vos,H.L., van der Lee,F.M., Reemst,A.M., van Loon,A.E. and
Sussenbach,J.S.
TITLE The genes encoding the DNA binding protein and the 23K protease of
adenovirus types 40 and 41
JOURNAL Virology 163 (1), 1-10 (1988)
PUBMED 3279700
REFERENCE 5 (bases 1 to 1941)
AUTHORS Ishino,M., Ohashi,Y., Emoto,T., Sawada,Y. and Fujinaga,K.
TITLE Characterization of adenovirus type 40 E1 region
JOURNAL Virology 165 (1), 95-102 (1988)
PUBMED 2968714
REFERENCE 6 (bases 1 to 1941)
AUTHORS Kidd,A.H. and Erasmus,M.J.
TITLE Sequence characterization of the adenovirus 40 fiber gene
JOURNAL Virology 172 (1), 134-144 (1989)
PUBMED 2773314
REFERENCE 7 (bases 1 to 1941)
AUTHORS Toogood,C.I., Murali,R., Burnett,R.M. and Hay,R.T.
TITLE The adenovirus type 40 hexon: sequence, predicted structure and
relationship to other adenovirus hexons
JOURNAL J. Gen. Virol. 70 (Pt 12), 3203-3214 (1989)
PUBMED 2481711
REFERENCE 8 (bases 1 to 1941)
AUTHORS Davison,A.J., Telford,E.A., Watson,M.S., McBride,K. and Mautner,V.
TITLE The DNA sequence of adenovirus type 40
JOURNAL J. Mol. Biol. 234 (4), 1308-1316 (1993)
PUBMED 8263936
REFERENCE 9 (bases 1 to 1941)
AUTHORS Davison,A.J., Benko,M. and Harrach,B.
TITLE Genetic content and evolution of adenoviruses
JOURNAL Unpublished
REFERENCE 10 (bases 1 to 1941)
AUTHORS Davison,A.J.
TITLE Direct Submission
JOURNAL Submitted (26-JUL-1993) MRC Virology Unit, Church Street, Glasgow
G11 5JR, UK
FEATURES Location/Qualifiers
source 1..1941
/organism="Human adenovirus F"
/mol_type="genomic DNA"
/isolate="Dugan"
/db_xref="taxon:130309"
/tissue_lib="ATCC VR-931"
mRNA complement(791..880)
/product="fiber-2"
mRNA complement(791..880)
/product="fiber-1"
mRNA complement(791..880)
/product="100K"
mRNA complement(791..880)
/product="22K"
mRNA complement(791..880)
/product="33K"
mRNA complement(791..880)
/product="pVIII"
mRNA join(<1..9,1740..1941)
/product="pol"
mRNA <1..1941
/product="pTP"
mRNA complement(791..880)
/product="pVI"
mRNA complement(791..880)
/product="hexon"
mRNA complement(791..880)
/product="protease"
mRNA complement(791..880)
/product="III"
mRNA complement(791..880)
/product="pVII"
mRNA complement(791..880)
/product="V"
mRNA complement(791..880)
/product="pX"
CDS join(1..9,1740..1941)
/codon_start=1
/product="pol"
/protein_id="AAC13953.1"
/db_xref="GI:303975"
/translation="MALVPSPRAGGFLPAETHSGPQPPRRRVRQSTAGAAPTATRAPR
RRAATASPGEPPSTTASGRPPAANNVSLTPNSRLRGTIVAPRGQGLLYAIDTATNSPM
EIKFHRRLASALTRLLQVNLRSVPADLNEAFLDSLDSSQIRTLALKLKVPRVEVWTCG
SRGVVVPSIIHPQQERAGAEEGDEGERQDTEDFLNFPLRFLVRGRQVHLIQEMQSVQR
CEYCARFYKYQHECTVRRRDFYFHHINAHSSGWWQKINFFPIGSHPRVERLFVTYDVE
TYTWMGAFGKQLVPFMLVMHLSGEEALVKEACRLACELQWDTWGNDERTFYVVTPEKL
AVGKKFREYRNRLQAHFALQLWRGFLAANPQLAEWACLEMGLFSPDYLTYEELQKAPK
LQGRPRFLELYIVGHNINGFDEIVLAAQVINNRSDVPGPFKITRNFMPRAGKILFNDI
TFALPNPSSKKRTDYRLWEQGACDDSDFKYQFLKVMVRDTFALTHTSLRKAAQAYTLP
VEKGCCPYKAVNEFYMLGSYRADERGFPAEDYWKDREEYLLNRELWEKKQCPHYDLVR
ETLDYCALDVLVTAALVQKLRESYAQFIRDAVGLPEASFNVFQRPTISSNSHAIFRQI
LYRTVKPQRSDLGGSLLAPSHEMYDYVRASIRGGRCYPTYIGVLREPLYVYDICGMYA
SALTHPMPWGFPLNPYERALAVRDWEHALLQVGTPIDYFNRTLLPGIFTIDADPPPEN
LLDVLPPLCSRKGGRLCWTNEPLRGEVVTSVDLITLHNRGWHVRLLPDERATVFPEWR
CVAKEYVHLNITAKERADREKNQTLRSIAKLLSNALYGSFATKLDNKKIVFSDQMDSA
TIKSIAAGQINIKSTSFVETDTLSAEVMPTFQRAYSPEQLAVVHSDAEESDEEPGHAP
FYTPTHKPNDHVTYTYKPITFMDAEEDDLCLHTLEKVDPLVENNRYPSQIASFVLAWT
RAFVSEWSEILYAEDRGTPLEQRTLKSVYGDTDSLFVTEAGYRLMETRGKKRIKKHGG
NLVFDPKHPELAWLVECETVCAQCGADAYSPESVFLAPKLYALKCLRCPSCQQISKGK
LRAKGHAAETLNYDLMLKCYLADFQGEDARFHTSRMSLKRTLASAQPGARPFTVTETN
LTRTLRPWKDITLAPLDAHRLVPYSQSRPNPRNQEVCWIEMP"
CDS 1..1941
/codon_start=1
/product="pTP"
/protein_id="AAC13954.1"
/db_xref="GI:303976"
/translation="MALSVQDCARLTGQSVPAMERFSPLRNIWNRVREYARAATTAAG
ITWLSRYVYHYHRLMLEDLAPGTPATLRWPLYREPPPHFLVGYQYLVRTCNDYVFESR
AYSRLRYTEITQPGMQVVNWSVMANCTYTINTGSYHRFVDLDDFQNTLTQIQQAVLAE
RVVADLALLQPLRGFGSTRMADRGELEIPVESLMQDYYKDLRRCQNEAWGMADRLRIQ
QAGPKDVTLLATIRRLKTAYFNFLISSITSSAASLRIPHATVLSLPCDCDWLEAFLEK
FSDPVQLDSLNEAWQSLPMQQMIRCTVSALSLPQGPHLLPPLSGSGMQGGVFELRPRE
NGRAVTETMRRRRGEMIQRFIDRLPVRRRRRRQPVPAPVSPEGPAVEEEEFMEIEETP
AAFEQEVRETVAEAIRLLQEELTFAARNSQFFNFAVDFYEAMDRLEALGDINEMTLRR
WVMYFFVCEHIATTLNYLFQRLRNYAVFARHVELNIAQVVMRARNTVGDVVYSRVWNE
NGLNAFSQLMRRISNDLAATVERAGHGELQDEEIDQFMSEIAYQDNSGDVQEILRQAA
VNDADIDSVELSFRFRVRGPVVFSQRRHIQDLNRRVVAYASQLRAQHQPLPELHADVP
LPPLQANPHPPLPPDARPQRTM"
mRNA complement(791..880)
/product="52K"
mRNA complement(791..880)
/product="pIIIa"
ORIGIN
1 atggctctga gcgtacaaga ttgcgcccgt ctgactggtc aaagcgtgcc cgccatggaa
61 cgcttctccc cgttgcgtaa catctggaac cgcgttcgcg aatacgcccg cgccgccact
121 accgccgccg gcatcacctg gctctctcga tatgtttacc actaccatcg ccttatgctg
181 gaggacctgg cccccggtac gcccgccaca cttcgctggc ccctttaccg cgagccgccg
241 ccccacttcc ttgttggcta ccagtacttg gttcgcacct gcaacgacta cgtttttgaa
301 tccagagcct actcgcgcct taggtatacc gagattacac agcccgggat gcaagtagtc
361 aactggtccg tcatggccaa ctgcacgtac accatcaaca ccggttccta ccaccgcttt
421 gtggacttgg atgatttcca aaacacttta actcagatac agcaggctgt gctcgccgaa
481 cgcgtagttg ccgacttggc cctgctgcag cccctgcgcg ggtttggttc cacacgcatg
541 gccgaccgag gggaattgga aatacccgta gaaagtctca tgcaagatta ttacaaggac
601 ctgcgccgat gtcagaacga agcttggggc atggcagacc gcctgcgaat tcaacaggcc
661 ggaccaaaag acgtcactct ccttgccacc atccgccgtt tgaagaccgc ctacttcaat
721 ttcctcatca gcagcatcac ctcctctgct gcctccctta gaatccctca tgccaccgtc
781 cttagcttac cttgcgactg cgattggctg gaagctttcc tcgaaaaatt ctctgatccc
841 gtccaactgg actcgctcaa tgaggcttgg cagtctctac ctatgcaaca gatgataaga
901 tgcacagtta gcgccctgtc gctgcctcag gggccccacc tacttcctcc cctctccggc
961 tcgggcatgc aaggcggcgt ctttgaactt cgcccccgag aaaacgggcg cgccgtcacc
1021 gaaaccatgc gtcgccgtcg cggagaaatg attcaacgtt tcattgaccg gctgcccgtc
1081 cggcgccgtc gtcgacgaca acccgtccca gcgccggtca gccccgaggg tcccgctgtg
1141 gaggaagagg agtttatgga aatcgaggaa acgccggcag ccttcgaaca agaggtgcgc
1201 gaaactgtag ccgaggcaat tcggctcctg caagaggagt tgacgtttgc ggcgcgcaac
1261 tcccagttct tcaacttcgc ggttgacttc tacgaggcaa tggaccgctt ggaagccctc
1321 ggagatatta acgaaatgac gcttcggcgc tgggtcatgt acttctttgt ttgcgagcac
1381 attgccacca cgctcaacta cctcttccag cgtctacgca actacgccgt ctttgcaaga
1441 cacgtagaac tgaacattgc acaagtggtg atgcgcgccc gaaacactgt tggcgacgtg
1501 gtctacagcc gcgtgtggaa cgaaaacggt cttaacgctt tctcccagct catgaggcgc
1561 atctctaatg accttgcagc cacggtggag cgcgcaggac acggagaact ccaggacgaa
1621 gagattgacc agtttatgtc ggagattgcc taccaagaca actctggcga cgtgcaggag
1681 attctgcgac aagccgcggt caacgatgcc gatattgatt ctgttgaact ctctttcagg
1741 ttccgagtcc gagggccggt ggttttctcc cagcggagac acattcagga cctcaaccgc
1801 cgcgtcgtcg cgtacgccag tcaactgcgg gcgcagcacc aaccgctacc cgagctccac
1861 gccgacgtgc cgctaccgcc tctccaggcg aacccccatc caccactgcc tccggacgcc
1921 cgcccgcagc gaacaatgta a
//