LOCUS L19443 3567 bp DNA linear VRL 14-AUG-2003
DEFINITION Human adenovirus F, complete genome.
ACCESSION L19443 REGION: complement(join(4750..8307,13180..13188))
VERSION L19443.1 GI:303969
KEYWORDS .
SOURCE Human adenovirus F
 ORGANISM Human adenovirus F
 Viruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus.
REFERENCE 1 (bases 1 to 3567)
 AUTHORS van Loon,A.E., Ligtenberg,M., Reemst,A.M., Sussenbach,J.S. and
 Rozijn,T.H.
 TITLE Structure and organization of the left-terminal DNA regions of
 fastidious adenovirus types 40 and 41
 JOURNAL Gene 58 (1), 109-126 (1987)
 PUBMED 2961652
REFERENCE  2 (bases 1 to 3567)
 AUTHORS Ishino,M., Sawada,Y., Yaegashi,T., Demura,M. and Fujinaga,K.
 TITLE Nucleotide sequence of the adenovirus type 40 inverted terminal
 repeat: close relation to that of adenovirus type 5
 JOURNAL Virology 156 (2), 414-416 (1987)
 PUBMED 3811242
REFERENCE 3 (bases 1 to 3567)
 AUTHORS Ishino,M.
 TITLE Analysis of structure and function of human adenovirus type 40
 leftmost 1.85 kb region including transforming E1A gene
 JOURNAL Sapporo Igaku Zasshi 57, 59-66 (1988)
REFERENCE 4 (bases 1 to 3567)
 AUTHORS Vos,H.L., van der Lee,F.M., Reemst,A.M., van Loon,A.E. and
 Sussenbach,J.S.
 TITLE The genes encoding the DNA binding protein and the 23K protease of
 adenovirus types 40 and 41
 JOURNAL Virology 163 (1), 1-10 (1988)
 PUBMED 3279700
REFERENCE 5 (bases 1 to 3567)
 AUTHORS Ishino,M., Ohashi,Y., Emoto,T., Sawada,Y. and Fujinaga,K.
 TITLE Characterization of adenovirus type 40 E1 region
 JOURNAL Virology 165 (1), 95-102 (1988)
 PUBMED 2968714
REFERENCE 6 (bases 1 to 3567)
 AUTHORS Kidd,A.H. and Erasmus,M.J.
 TITLE Sequence characterization of the adenovirus 40 fiber gene
 JOURNAL  Virology 172 (1), 134-144 (1989)
 PUBMED 2773314
REFERENCE 7 (bases 1 to 3567)
 AUTHORS Toogood,C.I., Murali,R., Burnett,R.M. and Hay,R.T.
 TITLE  The adenovirus type 40 hexon: sequence, predicted structure and
 relationship to other adenovirus hexons
 JOURNAL J. Gen. Virol. 70 (Pt 12), 3203-3214 (1989)
 PUBMED 2481711
REFERENCE 8 (bases 1 to 3567)
 AUTHORS Davison,A.J., Telford,E.A., Watson,M.S., McBride,K. and Mautner,V.
 TITLE The DNA sequence of adenovirus type 40
 JOURNAL J. Mol. Biol. 234 (4), 1308-1316 (1993)
 PUBMED 8263936
REFERENCE 9 (bases 1 to 3567)
 AUTHORS Davison,A.J., Benko,M. and Harrach,B.
 TITLE Genetic content and evolution of adenoviruses
 JOURNAL Unpublished
REFERENCE 10 (bases 1 to 3567)
 AUTHORS Davison,A.J.
 TITLE Direct Submission
 JOURNAL Submitted (26-JUL-1993) MRC Virology Unit, Church Street, Glasgow
 G11 5JR, UK
FEATURES Location/Qualifiers
  source 1..3567
 /organism="Human adenovirus F"
 /mol_type="genomic DNA"
 /isolate="Dugan"
 /db_xref="taxon:130309"
 /tissue_lib="ATCC VR-931"
 mRNA complement(join(1585..1656,2678..2718))
 /product="fiber-2"
 mRNA complement(join(1585..1656,2678..2718))
  /product="fiber-1"
 mRNA complement(join(1585..1656,2678..2718))
 /product="100K"
 mRNA complement(join(1585..1656,2678..2718))
 /product="22K"
 mRNA complement(join(1585..1656,2678..2718))
 /product="33K"
 mRNA complement(join(1585..1656,2678..2718))
 /product="pVIII"
 mRNA <1..3567
 /product="pol"
 mRNA <1..>3567
 /product="pTP"
 mRNA complement(join(1585..1656,2678..2718))
 /product="pVI"
 mRNA complement(join(1585..1656,2678..2718))
 /product="hexon"
 mRNA complement(join(1585..1656,2678..2718))
 /product="protease"
 mRNA complement(join(1585..1656,2678..2718))
 /product="III"
 mRNA complement(join(1585..1656,2678..2718))
  /product="pVII"
 mRNA complement(join(1585..1656,2678..2718))
 /product="V"
 mRNA complement(join(1585..1656,2678..2718))
 /product="pX"
 CDS 1..3567
  /codon_start=1
 /product="pol"
 /protein_id="AAC13953.1"
 /db_xref="GI:303975"
 /translation="MALVPSPRAGGFLPAETHSGPQPPRRRVRQSTAGAAPTATRAPR
 RRAATASPGEPPSTTASGRPPAANNVSLTPNSRLRGTIVAPRGQGLLYAIDTATNSPM
 EIKFHRRLASALTRLLQVNLRSVPADLNEAFLDSLDSSQIRTLALKLKVPRVEVWTCG
 SRGVVVPSIIHPQQERAGAEEGDEGERQDTEDFLNFPLRFLVRGRQVHLIQEMQSVQR
 CEYCARFYKYQHECTVRRRDFYFHHINAHSSGWWQKINFFPIGSHPRVERLFVTYDVE
 TYTWMGAFGKQLVPFMLVMHLSGEEALVKEACRLACELQWDTWGNDERTFYVVTPEKL
 AVGKKFREYRNRLQAHFALQLWRGFLAANPQLAEWACLEMGLFSPDYLTYEELQKAPK
 LQGRPRFLELYIVGHNINGFDEIVLAAQVINNRSDVPGPFKITRNFMPRAGKILFNDI
 TFALPNPSSKKRTDYRLWEQGACDDSDFKYQFLKVMVRDTFALTHTSLRKAAQAYTLP
 VEKGCCPYKAVNEFYMLGSYRADERGFPAEDYWKDREEYLLNRELWEKKQCPHYDLVR
 ETLDYCALDVLVTAALVQKLRESYAQFIRDAVGLPEASFNVFQRPTISSNSHAIFRQI
 LYRTVKPQRSDLGGSLLAPSHEMYDYVRASIRGGRCYPTYIGVLREPLYVYDICGMYA
 SALTHPMPWGFPLNPYERALAVRDWEHALLQVGTPIDYFNRTLLPGIFTIDADPPPEN
  LLDVLPPLCSRKGGRLCWTNEPLRGEVVTSVDLITLHNRGWHVRLLPDERATVFPEWR
 CVAKEYVHLNITAKERADREKNQTLRSIAKLLSNALYGSFATKLDNKKIVFSDQMDSA
 TIKSIAAGQINIKSTSFVETDTLSAEVMPTFQRAYSPEQLAVVHSDAEESDEEPGHAP
 FYTPTHKPNDHVTYTYKPITFMDAEEDDLCLHTLEKVDPLVENNRYPSQIASFVLAWT
 RAFVSEWSEILYAEDRGTPLEQRTLKSVYGDTDSLFVTEAGYRLMETRGKKRIKKHGG
 NLVFDPKHPELAWLVECETVCAQCGADAYSPESVFLAPKLYALKCLRCPSCQQISKGK
 LRAKGHAAETLNYDLMLKCYLADFQGEDARFHTSRMSLKRTLASAQPGARPFTVTETN
 LTRTLRPWKDITLAPLDAHRLVPYSQSRPNPRNQEVCWIEMP"
 CDS 1..>211
 /codon_start=1
 /product="pTP"
 /protein_id="AAC13954.1"
 /db_xref="GI:303976"
 /translation="MALSVQDCARLTGQSVPAMERFSPLRNIWNRVREYARAATTAAG
 ITWLSRYVYHYHRLMLEDLAPGTPATLRWPLYREPPPHFLVGYQYLVRTCNDYVFESR
 AYSRLRYTEITQPGMQVVNWSVMANCTYTINTGSYHRFVDLDDFQNTLTQIQQAVLAE
 RVVADLALLQPLRGFGSTRMADRGELEIPVESLMQDYYKDLRRCQNEAWGMADRLRIQ
 QAGPKDVTLLATIRRLKTAYFNFLISSITSSAASLRIPHATVLSLPCDCDWLEAFLEK
 FSDPVQLDSLNEAWQSLPMQQMIRCTVSALSLPQGPHLLPPLSGSGMQGGVFELRPRE
 NGRAVTETMRRRRGEMIQRFIDRLPVRRRRRRQPVPAPVSPEGPAVEEEEFMEIEETP
 AAFEQEVRETVAEAIRLLQEELTFAARNSQFFNFAVDFYEAMDRLEALGDINEMTLRR
 WVMYFFVCEHIATTLNYLFQRLRNYAVFARHVELNIAQVVMRARNTVGDVVYSRVWNE
 NGLNAFSQLMRRISNDLAATVERAGHGELQDEEIDQFMSEIAYQDNSGDVQEILRQAA
 VNDADIDSVELSFRFRVRGPVVFSQRRHIQDLNRRVVAYASQLRAQHQPLPELHADVP
 LPPLQANPHPPLPPDARPQRTM"
 mRNA complement(join(1585..1656,2678..2718))
 /product="52K"
 mRNA complement(join(1585..1656,2678..2718))
 /product="pIIIa"
 TATA_signal complement(2744..2749)
 /note="for L"
 mRNA join(2931..3061,3340..3567)
 /product="IVa2"
 CDS join(3049..3061,3340..3567)
 /codon_start=1
  /product="IVa2"
 /protein_id="AAC13952.1"
 /db_xref="GI:303974"
 /translation="METRGRRRAFSHQQDEPEENPGKRPTRSAPLYRHRNQPNANPAT
 LERHYPCSTGRPPTGTVQPKPSQPPQPRSLLDRDAIDHITELWDRLYLLRQSLEKMTM
 ADGLKPLKHFRSLEELLSLGGERLLQDLVKENQHVRSMMNEVTPLLREDGSCISLNYQ
 LQPVIGVIYGPTGCGKSQLLRNLLSTQLINPPPETVFFIAPQVDMIPPSEIKAWEMQI
  CEGNYAPGPEGTIIPQSGTLLPRFIKMAYDELTLEQNYDVSHPDNIFAKAASQGPIAI
 IMDECMENLGGHKGVSKFFHAFPSKLHDKFPKCTGYTVLVVLHNMNPRRDLGGNIANL
 KIQAKMHLISPRMHPSQLNRFVNTFTKGLPLAISLLLKDIFQFHAQKPCYDWIIYNTT
 PEHDALQWSYLHPRDGLMPMYLNIQAHLYRVLENIHKVLNDRDRWSRAYRKRNK"
ORIGIN 
 1 atggctctgg ttccgagtcc gagggccggt ggttttctcc cagcggagac acattcagga
 61 cctcaaccgc cgcgtcgtcg cgtacgccag tcaactgcgg gcgcagcacc aaccgctacc
 121 cgagctccac gccgacgtgc cgctaccgcc tctccaggcg aacccccatc caccactgcc
 181 tccggacgcc cgcccgcagc gaacaatgta agccttaccc ccaactctcg cctgcgtggt
 241 accattgtag ctccccgcgg acaaggtctt ctgtatgcta ttgacactgc taccaactca
 301 ccaatggaaa tcaagtttca tcgccgcctg gcatcggccc ttacccgtct cctgcaagtc
 361 aaccttcgat ctgtgcccgc tgatctgaac gaggccttcc tggactccct ggacagttcc
 421 caaatccgca ctcttgctct caagctgaag gtgccccgcg ttgaggtctg gacctgtggc
 481 tcgcggggcg ttgtcgttcc ctccatcatc cacccacagc aagagcgtgc aggtgcagaa
 541 gagggcgacg agggtgaaag gcaagacact gaggattttc tcaacttccc tctccgattt
 601 ctcgtacgtg ggcgacaggt acacctcatt caagagatgc agagcgtgca acgctgcgag
 661 tattgcgccc gcttttacaa atatcagcac gaatgcacgg tccgccggag agacttctac
 721 tttcatcata tcaacgccca ctcctccggc tggtggcaga aaatcaattt ctttccgatc
 781 ggctctcatc ctcgcgtcga acgcctcttt gtcacctacg acgtcgaaac ctacacgtgg
 841 atgggagcct ttggtaaaca gctggtcccc tttatgctag ttatgcatct ctcgggggag
 901 gaagcccttg ttaaggaagc ctgccgactg gcctgcgagt tgcagtggga cacttgggga
 961 aacgacgaac gtacctttta cgtggtgacc cccgaaaaat tggcggtggg caaaaagttt
 1021 cgagagtacc gcaaccgctt gcaagcccat tttgccctcc agctatggcg cggttttcta
 1081 gccgccaatc cccaactggc agaatgggct tgcttggaaa tgggtctttt ttctcctgat
 1141 taccttacct atgaagagtt acaaaaggcc cccaaactcc agggacgccc ccgcttttta
 1201 gaactttaca ttgtggggca taacatcaac ggcttcgatg aaatcgtact tgcagctcag
 1261 gttattaaca accgttctga tgtgcccggg cctttcaaaa tcacccgcaa ctttatgcct
 1321 agagccggca aaatcctttt taatgatatc acctttgccc ttcctaatcc aagctcaaaa
 1381 aaacgcaccg actatcgcct atgggagcag ggcgcctgcg acgactctga ttttaagtat
 1441 caattcctca aggttatggt gcgcgacact tttgccctca cacacacgtc tctgcgaaaa
 1501 gccgcacaag cctataccct tccggtagaa aaaggatgct gcccatacaa ggccgtaaac
  1561 gagttttaca tgctgggttc ttaccgcgca gacgagcgtg gctttcctgc cgaagattac
 1621 tggaaggatc gcgaggagta cctcctgaac cgcgaactct gggaaaaaaa gcaatgtcct
 1681 cattacgacc tggtgcgtga aacccttgat tactgtgccc tggatgtgct tgttaccgcc
 1741 gccctggtgc aaaagttgcg cgaatcctac gctcagttta tccgcgacgc ggtaggtcta
 1801 cccgaagcca gctttaacgt ctttcagcgg cccaccatct cctccaactc ccacgccatc
 1861 tttcgtcaaa tcttgtaccg gacagtaaaa ccccagcggt cggacctagg cggcagcttg
 1921 ctggcccctt cccacgaaat gtatgactat gttcgggcta gcattcgcgg aggacgctgt
 1981 tatccaactt acattggggt gctacgcgaa ccactttacg tttatgacat ctgtggcatg
 2041 tacgcctctg cacttaccca tcccatgccg tggggcttcc cactcaatcc ctacgagcgc
 2101 gccctagcgg tccgagattg ggaacacgct cttttgcaag ttggtacccc cattgattat
 2161 ttcaatcgca ccctgctgcc tggcattttt accatcgacg ccgacccccc acctgaaaac
 2221 ctactagatg ttttgccccc actctgttcg cgcaaaggag ggcgcctttg ctggaccaat
 2281 gagcccctgc gcggcgaggt agttaccagt gtggacctta taacactgca caaccggggc
 2341 tggcatgtgc ggttgcttcc cgacgagcgc gccactgtct ttcccgagtg gcgctgcgtg
 2401 gcaaaagagt acgttcatct taatatcacc gccaaggagc gtgccgaccg cgaaaaaaac
 2461 caaacactgc gttccattgc caaactgctc tccaacgccc tctatggatc ctttgctacc
 2521 aaacttgata acaaaaaaat tgtattttct gaccaaatgg attcagccac catcaaaagc
 2581 attgccgcag ggcagataaa tatcaaatcc acctcgtttg tggaaactga cactctaagt
 2641 gctgaagtta tgcccacctt tcaacgcgca tactcacccg aacagctggc tgtcgtccac
 2701 agcgatgcgg aagaaagtga tgaagagccc ggacacgccc ccttttatac acccacgcac
 2761 aagcccaatg accacgtgac ctacacttac aaaccaatta cctttatgga tgcagaagaa
 2821 gatgaccttt gccttcacac cctagaaaag gtcgaccccc tggtggaaaa caaccgttat
 2881 ccctcccaaa tcgcctcctt tgttttagcc tggacccggg cttttgtctc agaatggtcc
 2941 gagatcttgt acgcagagga cagaggcaca ccgttggaac agcgtaccct caaatcagtt
 3001 tacggagaca cagacagctt gtttgtcacc gaagccggat accgcctcat ggaaacacga
 3061 ggtaagaaac gcatcaaaaa acacggaggc aatctggttt ttgacccaaa acaccctgag
 3121 ctcgcctggt tagtggagtg cgaaaccgtg tgtgcacagt gtggcgccga cgcttattca
 3181 ccagagtccg tcttcctggc tcccaaactc tacgccctaa aatgcctccg ctgtcccagc
 3241 tgtcagcaaa tttccaaggg caagcttcgc gccaaaggac acgctgccga aaccctcaac
 3301 tatgatctca tgttaaaatg ctacttggcc gactttcagg gcgaagacgc gcgttttcac
 3361 accagcagga tgagcctgaa gagaaccctg gcaagcgccc aacccggagc gcgccccttt
 3421 accgtcaccg aaaccaacct aacgcgaacc ctgcgaccct ggaaagacat tacccttgct
 3481 ccactggacg cccaccgact ggtaccgtac agccaaagcc gtcccaaccc ccgcaaccaa
 3541 gaagtttgtt ggatcgagat gccatag
//