Department of Bioinformatics and Computational Biology

George Mason University

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Job Opportunities




Posted 11/04/09

Bioinformatics Scientist
Monsanto

Monsanto is seeking a highly motivated individual who is excited about applying computational tools to large scale biological data for finding gene leads. This position involves intensive data mining and genetic network modeling for gene function prediction. The individual will apply and develop modern bioinformatics and data mining tools for integration of diverse types of genomic and other biological data to obtain insights about the function of genes, gene products, and other genetic elements. Some projects will involve collaboration with laboratory research scientists, and the results will be applied to projects in research and development.

The Bioinformatics Scientist will have the opportunity to apply his or her knowledge to strategic and tactical issues in the general area of sequence analysis and bioinformatics. Specific projects include sequence analysis and assembly through hands on programming, as well as evaluating external software packages and integrating them into an in-house environment. He or she will contribute to and drive strategies for annotation using a variety of information sources:

An excellent candidate will have expertise in bioinformatics algorithms, tools, and databases, such as BLAST, CLUSTALW, Ensembl, Gene Ontology, and KEGG. Strong programming skills in Perl/ Python and C/C++/Java, experiences in developing web interfaces using CGI-PERL, JavaScript, HTML, and XML, and practical knowledge of ORACLE and MySQL databases is also very useful. Experience with gene discovery, transcriptome analysis, microbial genomics, high-throughput sequencing and very large data sets is highly desirable.

Please note that only applications submitted through the Monsanto career web site will be considered for this position.

To view a more complete and detailed job description of this exciting position, please visit our website at www.monsanto.com/careers/ and to apply online select req. # 000SQ. We offer very competitive salaries and an extensive benefits package.




Posted 11/02/09

Revised Assistant Professor Position: Mathematics
University of Miami

University of Miami
Department of Mathematics
Assistant Professor

The Department of Mathematics at the University of Miami is seeking outstanding candidates to fill a tenure track position at the rank of Assistant Professor beginning in the Fall 2010. While we invite applications from all areas of mathematics, special consideration will be given to candidates in the areas of geometric analysis and mathematical biology.

Candidates should demonstrate outstanding research potential and have a strong commitment to teaching excellence. Candidates with postdoctoral experience are especially encouraged to apply, although applications from new Ph.D.'s are also welcome. A Ph.D. is required by the time the appointment begins.

Formal review of applications will begin December 1, 2009 and will continue until the positions are filled. Applications should be submitted electronically through the AMS website www.mathjobs.org. Letters of recommendation, three of which should address research and one of which should address teaching, may be submitted online at www.mathjobs.org or mailed to: Search Committee, Department of Mathematics, University of Miami, P.O. Box 249085, Coral Gables, FL 33124-4250.

The University of Miami is an Affirmative Action/Equal Opportunity Employer, and is committed to increasing the diversity of its faculty. We especially encourage applications from women, minorities and other underrepresented groups.




Posted 11/02/09

Research Scientist: Remote Sensing and Public Health
University of Maryland

Subject to funding approval, the Goddard Earth Sciences and Technology Center (GEST) will make Research Faculty appointments at the Research Associate, Assistant Research Scientist, Associate Research Scientist, and Senior Research Scientist levels as commensurate with experience. GEST is a Cooperative Agreement between the University of Maryland, Baltimore County (UMBC) and the NASA Goddard Space Flight Center (GSFC) to collaborate in research programs in the Earth, Information, and Instrumentation sciences. GEST is a Consortium whose members include UMBC, Hampton University, Howard University, and Caelum Research Corporation. Positions will generally be located either at GSFC or at the offices of one of the consortium members. More than one candidate may be chosen for some positions. All candidates must have degrees in an appropriate physical discipline and a demonstrated research record in accordance with the specific qualifications listed for each of the following positions:

GEST 610-110-387 Research Activity - Remote Sensing and Public Health

Research scientist required to utilize remote sensing technology to monitor, predict, and facilitate the control of infectious disease transmission. As environmental and climatic factors have a profound role in initiating, promoting and sustaining the transmission of infectious diseases globally, the objective of the research is to develop empirical and theoretical models and techniques that can be used by public health organizations for disease surveillance and control. Applicants must be interested in understanding the details of infectious diseases transmission, and willing to interact with epidemiologists and experts in related disciplines. This research may include aspects of ecological modeling and biodiversity.

Requires - The position requires a Ph.D. in Earth sciences, physics, mathematics, computer sciences, theoretical ecology or engineering with similar emphases. Past experience with methods for extracting or deriving geophysical parameters from satellite measurement would be helpful. Familiarity with common geospatial and GIS techniques; statistical methods (biostatistics desirable); numerical methods; and dynamic system modeling techniques and in particular, with C, IDL, R, SAS, ArcGIS and Matlab are definite assets. Selection is contingent upon obtaining Goddard security clearance and possessing appropriate visa status to meet requirements for employment. For full position description, visit our website at: www.umbc.edu/GEST.

Applications are requested prior to November 15, 2009, although positions remain open until filled. Submit a complete curriculum vitae, including the names, addresses, and telephone numbers of three references, to Ms. Danita Eichenlaub, Acting Director, GEST, University of Maryland, Baltimore County, Suite 320 5523 Research Park Drive, Baltimore, MD 21228. GEST partners are equal opportunity/affirmative action employers.




Posted 11/02/09

Faculty Positions
NIMBioS, University of Tennessee

Faculty Positions: National Institute for Mathematical and Biological Synthesis (NIMBioS) at the University of Tennessee, Knoxville

As part of a major initiative associated with the National Institute for Mathematical and Biological Synthesis (NIMBioS), the University of Tennessee, Knoxville, seeks two outstanding researchers to expand our highly active research groups at the interface of mathematics and biology. We seek individuals who will reach across traditional boundaries to develop transformative science, making use of exciting new developments in the life sciences, mathematics and computational science. These are tenure-track positions at levels appropriate to experience.

Animal Infectious Disease Modeling: We seek an outstanding scientist with a strong record of research in the mathematics and modeling of animal infectious diseases, to start August 1, 2010. A Ph.D. is required and a DVM/VMD or equivalent degree would be beneficial. Postdoctoral experience is preferred. A commitment to excellence in teaching is expected. Teaching responsibilities will include graduate-level courses appropriate for a diverse group of biology, mathematics, wildlife and veterinary students. We seek a creative colleague who will develop an innovative research program using mathematical approaches to address fundamental and applied questions in animal infectious disease. This position may be based in the College of Veterinary Medicine (Department of Comparative Medicine or Pathobiology) or the Department of Forestry, Wildlife and Fisheries, or the Department of Mathematics, with possible joint appointments between these or other units.

Mathematics for Biology at Below-Organism Level: We seek an outstanding researcher with a strong record in the mathematics and modeling of biological systems below-organism level. A Ph.D. is required and post-doctoral experience is preferred. A commitment to excellence in teaching at both undergraduate and graduate levels is expected. Teaching responsibilities will include graduate-level courses in the area of the applicant that would be appropriate for a diverse group of biology and mathematics students. Candidates are expected to have sufficiently strong mathematics experience appropriate for appointment to the faculty of Mathematics or the faculty of Electrical Engineering and Computer Science, although base and joint appointments are also possible in other units including the Department of Biochemistry, Cellular and Molecular Biology and the Department of Microbiology.

UT has active interdisciplinary research groups across many areas of biology and mathematics including epidemiology and offers an exciting environment for collaborative research with colleagues from many units at UT and from Oak Ridge National Laboratory. For information about NIMBioS, visit http://nimbios.org.

Candidates for positions should apply to:
Dr. Louis J. Gross
National Institute for Mathematical and Biological Synthesis
University of Tennessee, Knoxville, TN 37996-1527
faculty-searches@nimbios.org

Applicants should send electronic copies of their CV, statements of research and teaching goals, and up to 5 reprints, and should arrange for three reference letters to be submitted. Applications will be reviewed beginning November 13, 2009.

The University of Tennessee is an EEO/AA/Title VI/Title IX/Section 504/ADA/ADEA institution in the provision of its education and employment programs and services. All qualified applicants will receive equal consideration for employment without regard to race, color, national origin, religion, sex, pregnancy, marital status, sexual orientation, gender identity, age, physical or mental disability, or covered veteran status.




Posted 11/02/09

Postdoc Position: Modeling Infectious Disease Epidemiology
Rutgers

Applications are currently being solicited for a post-doctoral research associate in the area of mathematical modeling of infectious disease epidemiology at Rutgers University in New Brunswick, NJ. The lab's epidemiological research focuses on the modeling of population robustness to disease threats, biosecurity and biosurveillance, economic epidemiology, and the impact of individual behavior and decision making on population-level disease outcomes. Additional related research interests in the lab include the evolution of sociality and social complexity, self-organizational strategies, efficiency of bio-inspired distributed decision making, and population persistence. Questions explored are both theoretical and applied, and an ideal candidate would be interested in both.

Requirements:

An ideal candidate could come from theoretical biology, epidemiology, or public health, but could also come from a program in applied mathematics, computer science, operations research, bio-engineering, or nearly any other technical field. The lab runs jointly between The Center for Discrete Mathematics and Theoretical Computer Science and the department for Ecology, Evolution and Natural Resources, so there exists the possibility to play with the job title for those wishing to work in biology for a while, but then possibly return to math or computer science.

This position could be appropriate not only to new Ph.Ds, but also to more advanced researchers looking to switch fields, or re-enter academia from government or industry.

This is a full-time, one year position with benefits, renewable for an additional year if things work out well. (International applications are welcome, but please be advised that the position is unable to offer H1b visas and can only provide a J1.) Ideal start date: February 2010, however this is negotiable. For further questions, or to apply by sending CV and statement of interest, send email to Nina H. Fefferman at . Please ONLY apply for this position if you have had some experience in the mathematical modeling of infectious diseases. Applications will be reviewed as they arrive. Please understand if it takes a long while to hear back - previous job postings from this lab have resulted in hundreds of applications and it just takes a long time to sort through all of them, especially after the position has been filled.




Posted 10/27/09

Faculty Position
Indiana University-Purdue University

The Department of Natural, Information, and Mathematical Sciences at Indiana University-Purdue University invites applications for a fuil time, tenure-track, 10-month, informatics position at the assistant professor level beginning August 2010.

For more information click here




Posted 10/26/09

Faculty Positions
Indiana University-Purdue University

The Department of Mathematical Sciences at IUPUI invites applications for two or more faculty positions, with rank open, to begin August 1, 2010. These appointments will be made in support of Indiana University's Life Sciences Initiative and the newly established Center for Mathematical Biosciences, in the department. IUPUI is Indiana's urban research and academic health sciences campus, and the focal point of the Indiana Life Sciences Initiative. The Department, with a faculty of 45, offers programs of study leading to Purdue University B.S, M.S., and Ph.D. degrees in pure and applied mathematics, including an M.S. in Applied Statistics and a B.S. in Mathematics with Actuarial Science concentration. The Department also offers a Ph.D. degree in biostatistics in collaboration with the IU School of Medicine. Current areas of research strength in the Department include mathematical physics and integrable systems, dynamical systems, operator algebras and non-commutative geometry, differential geometry, mathematical neuroscience and biomathematics, scientific computing, and applied statistics.

Qualifications: Applicants must have an earned doctorate in the mathematical sciences or related areas, a strong research program and be able to teach effectively at the undergraduate and graduate levels. Applicants at the Associate or Full Professor level must have a record of significant research accomplishments and external funding. Tenure may be offered to a successful senior candidate, depending on the candidate?s qualifications and accomplishments.

How to Apply: A complete application must include: a letter of interest, curriculum vitae, statements on research plans and teaching philosophy, and three letters of recommendation. Applications should be submitted electronically to: Applied Mathematics Search Committee, www.mathjobs.org. Screening of completed applications will begin on November 1, 2009, and will continue until all approved positions are filled.




Posted 10/26/09

Assistant Professor: Mathematics
University of Miami

The Department of Mathematics at the University of Miami is seeking outstanding candidates to fill a tenure track position at the rank of Assistant Professor beginning in the Fall 2010. While we invite applications from all areas of mathematics, special consideration will be given to candidates in the areas of geometric analysis and mathematical biology.

Candidates should demonstrate outstanding research potential and have a strong commitment to teaching excellence. Candidates with postdoctoral experience are especially encouraged to apply, although applications from new Ph.D.'s are also welcome. A Ph.D. is required by the time the appointment begins.

Formal review of applications will begin December 1, 2009 and will continue until the positions are filled. Applications should be submitted electronically through the AMS website www.mathjobs.org. Letters of recommendation may be submitted online at www.mathjobs.org or mailed to: Search Committee, Department of Mathematics, University of Miami, P.O. Box 249085, Coral Gables, FL 33124-4250.

The University of Miami is an Affirmative Action/Equal Opportunity Employer, and is committed to increasing the diversity of its faculty. We especially encourage applications from women, minorities and other underrepresented groups.




Posted 10/26/09

Research Assistant Position: Computational Biology
UNSW, Sydney

Research assistant position: Computational Biology, University of New South Wales, Sydney, Australia

Position description:
The Complex Systems in Biology group is seeking a Research Assistant to work on an innovative bioinformatics/ computational biology approach to studying immune responses to infectious diseases. The successful applicant will have a strong background in bioinformatics or computing science/ statistics/ engineering/ biological science. Excellent computer programming skills are essential and a knowledge of bioinformatics is desirable.

Application:
A full description of the position and the application process are available at http://www.hr.unsw.edu.au/services/recruitment/newjobres.html Position reference number: 6781NET Applications must be submitted to Human Resources at UNSW.

Further information about the position can be obtained from either Dr Vanessa Venturi: v.venturi@unsw.edu.au or Associate Professor Miles Davenport: m.davenport@unsw.edu.au.




Posted 10/26/09

Full Time Positions & Graduate Internships
Merck Research Labs

The Applied Computer Science and Math Department at Merck Research Labs has posted full time and graduate internship positions of possible interest to graduate students and graduate alumni in Mathematics, Computer Science, Engineering, Computational Biology, Operations Research, and related fields.

Computational science and mathematics research positions in Merck Research Laboratories include work in the areas of simulation, mathematical modeling, optimization, pattern recognition, parameter estimation, discrete algorithms, software engineering, computational biology, knowledge representation, and related areas. Project areas include data mining, modeling of disease/physiology and biochemical kinetics, operations research, EEG signal analysis, bionetwork reverse engineering and modeling, computational immunology modeling in vaccine and biologics design, RNAi sequence analysis, high-content and high-throughput screening data analysis, PET/MRI/Ultrasound image analysis, and algorithm implementation & testing.

Full Time and Intern positions require participation in a PhD degree program in Mathematics, Computer Science, Chemical/Biological Engineering, Operations Research, or related areas, and knowledge of C/C++, Java, matlab, R, and/or Mathematica. Experience in one or more of the following areas is required: discrete and numerical algorithms, optimization, machine learning and automated pattern recognition, computational biology, mathematical analysis and modeling, differential equations, mathematical programming, stochastic processes, scientific software engineering, parallel algorithms, complexity theory, bioinformatics, signal and/or image processing, and knowledge representation. Desired (but not required) is knowledge and/or experience encompassing chemistry, biology, genetics, biochemistry, or pharmacology.

Interested students should apply online by taking these 3 steps:

For any questions or issues with this process current students can contact Susan Serrao, susan_serrao@merck.com, and those who have graduated at least 6 months ago can contact Fran Murphy at francis_murphy@merck.com




Posted 10/26/09

Assistant/Associate Professor: Theoretical/Quantitative Ecology
University of Florida

The Department of Biology, University of Florida, seeks applicants who develop quantitative and theoretical tools to advance ecological understanding, link theory with data, integrate processes and patterns across levels of organization and/or spatial scales, and have diverse interests (e.g., the interface of ecology and evolution, global change, physiological ecology). Instruction at both undergraduate and graduate levels is expected (e.g., courses in statistical or mathematical modeling). We offer a collegial environment that fosters collaborative, interdisciplinary research emphasizing integration of mechanistic and ecological studies with evolutionary principles. Our faculty enjoy strong ties with the Florida Museum of Natural History, UF Genetics Institute, UF Emerging Pathogens Institute, and multiple University centers in biomedical, veterinary, environmental and agricultural sciences.

For more information and to submit an electronic application consisting of a cover letter, curriculum vitae, statements of research and teaching interests, three reprints, and names of three referees, please go to http://www.biology.ufl.edu/Administration/Jobs.aspx. A Ph.D. in a relevant discipline is required; postdoctoral research experience is preferred. The anticipated starting date is August 16, 2010.

The appointment is at the rank of tenure-track Assistant Professor; however, appointments at the Associate Professor rank are possible for exceptional candidates. Review of applications will begin 15 November 2009 and will continue until the position is filled. The selection process will be conducted under Florida's "Government in the Sunshine" and Public Records Laws. Our department is committed to diversity as a component of excellence, and women, minorities and members of other under-represented groups are encouraged to apply. The University of Florida is an equal opportunity institution.




Posted 10/26/09

Postdoc Position
Bernstein Center Freiburg

Postdoc-Position - "Investigation of activity-dependent signal integration in neocortical neurons"

Our lab uses combined intra- and extracellular recordings in rat V1 in vivo, as well as dynamic photo stimulation of acute brain slices to study network dynamics in V1 and the influence of dynamical states on the integration of synaptic input in pyramidal cells. The offered position is funded by the EU FACETS program (http://facets.kip.uni-heidelberg.de), and should, therein, contribute to the aspect of experimental characterization of cortical cells and networks in vivo and in vitro.

The goal of our work is to link the obtained electrophysiological data, in close collaboration with other groups at the BCCN and within FACETS, to new models of neocortical networks, aimed to better understand the mechanisms underlying network dynamics in the cortex.

The post-doc position is available immediately for 1 year with an optional one year extension.

We are looking for experimentalists with a solid background in electrophysiological recording techniques and interest in computational neuroscience.

Please apply via the online application form:
http://www.bccn2.uni-freiburg.de/postdoc_applications/index.php
(Project-ID: FACETS)




Posted 10/26/09

Postdoctoral Position & Studentships: Computational Microbiology
University of Glasgow

Vacancies for a Postdoctoral Research Associate and Studentships in Computational Microbiology at the University of Glasgow - Department of Civil Engineering

A three year EPSRC funded postdoctoral research associate position in computational microbiology is available. The researcher will form part of a group headed by Dr. Christopher Quince integrating data from new genomics methods into mathematical models of microbial communities. The long term goal of the research will be improved wastewater treatment and microbial fuel cell (MFC) technologies. We are looking for someone with a doctorate and excellent computational and mathematical skills. Knowledge of the following areas would be an advantage: Bayesian statistics, bioinformatics, machine learning, microbial ecology, neutral theory, software programming, and stochastic models. This is open to international applicants. The closing date is 1st December 2009. The preferred start date is January 5th 2010 but up until 1st January 2011 is possible. Salary will be from £31,513 - £35,469 per annum. Full details are available from http://www.jobs.ac.uk/job/AAE309/postdoctoral-research-associate/ and please contact Dr Christopher Quince (quince@civil.gla.ac.uk) with any questions.

As part of the same project a three and a half year EPSRC funded PhD studentship is also available supervised by Dr Christopher Quince and Prof. William Sloan. The objective of this studentship is to develop individual level stochastic models of microbial communities. These will be analysed computationally and mathematically using the theory of stochastic processes in conjunction with Dr Todd Parsons and Prof. Joshua Plotkin at the University of Pennsylvania. There is funding for the student to visit Prof. Plotkin's group for three months. This represents a unique opportunity for a mathematically gifted candidate to develop skills in computer modelling and stochastic theory and forge international research relationships. The successful candidate will have a good or expected good (2:1 or above or equivalent) MSc or undergraduate degree in Engineering, Mathematics, Physics, Theoretical Ecology, or other mathematical subject. The studentship is open to all UK and EU eligible candidates with a stipend of £13,290 per annum. The preferred start date is January 5th 2010, but start dates up to 1st October 2011 are possible. We will begin considering applications on December 1st 2009, and applications will be accepted until the position is filled. Full details are available from http://www.jobs.ac.uk/job/AAE778/phd-studentship-in-computational-microbiology/ and please contact Dr Christopher Quince (quince@civil.gla.ac.uk) with any questions.

A bioinformatics PhD studentship is available under the BBSRC industrial CASE scheme. The objective of this studentship is to use ideas from machine learning to develop improved tools for the analysis of metagenomics data from human associated microbial communities. It will be supervised by Dr Christopher Quince, Prof. William Sloan and Dr David Taylor (Unilever). The studentship is open to all UK and EU eligible candidates with a stipend of £16,290 per annum. The preferred start date is 1st December 2009, but start dates up to 31st March 2010 are possible. We will begin considering applications on November 14th 2009. Full details are available at http://www.jobs.ac.uk/job/AAD767/phd-studentship/ and please contact Dr Christopher Quince (quince@civil.gla.ac.uk) with any questions.




Posted 10/26/09

Post Doctoral Research Fellowship
University College London

CENTRE FOR COMPUTATIONAL SCIENCE
University College London

Post Doctoral Research Fellow

CEREBROVASCULAR HEMODYNAMICS

Applications are invited for a Post Doctoral Research Fellowship at the Centre for Computational Science at UCL. The successful candidate will join a very active inter-disciplinary group at the Centre for Computational Science, working between two interlinked projects funded by EU FP7, the Virtual Physiological Human Network of Excellence and Contra Cancrum (http://www.vph-noe.eu/ and http://www.contracancrum.eu).

The project will involve development, deployment and application of advanced computational methods to support clinical decision-making in interventional neurosurgery. It will involve collaboration with a clinical team at UCL Hospital.

The ideal candidate will have substantial experience of the use of lattice-Boltzmann methods for 3D fluid dynamics within a high performance computing environment. Experience of high performance visualisation and medical imaging methodologies would be advantageous. Applicants should have (or be about to obtain) a PhD in physics, applied mathematics, chemistry, computational biology or computer science and a proven ability to work as a member of a team.

The position is available to start on or after 1 January 2010, for a period of up to two years. Salary will be on the UCL pay scale at Grade 7 (£28,839- 35,469 plus London Allowance), depending on qualifications and experience.

See further particulars including job description and person specification at http://www.ucl.ac.uk/hr/jobs/, where you can apply online. Informal inquiries may be addressed to Professor Peter Coveney, Director of the Centre for Computational Science, University College London, 20 Gordon Street London WC1H 0AJ U.K. (email: P.V.Coveney@ucl.ac.uk).

For further information see http://www.chem.ucl.ac.uk/ccs/ and www.realitygrid.org.

Closing date: 9 November 2009




Posted 10/22/09

Assistant Professor Informatics
Indiana University Kokomo

The Department of Natural, Information and Mathematical Sciences at Indiana University Kokomo invites applications for a full time, tenure-track, 10-month, informatics position at the assistant professor level beginning August 2010 (please see the attached document). More information can be found at:
http://www.iuk.edu/~kohr/jobs.shtml




Posted 10/22/09

Biologist/Toxicologist/Phy Scientist
US Environmental Protection Agency

Quantitative Risk Methods Group
National Center for Environmental Assessment (ORD)
US Environmental Protection Agency, Washington, DC

The Quantitative Risk Methods Group is looking for a biologist with a strong background in mathematical modeling, ideally with some experience in studying molecular pathways associated with genetic and environmental contributions to human disease.

The incumbent will work in the fields of health and quantitative assessment and is responsible for serving EPA as an expert in the integration of data in these areas. A specific area of focus in this position is detailed biological evaluation and analysis of quantitative data on the response of organisms to environmental stressors (especially toxic substances). As such this work requires both development of expert evaluations of the quantitative biological data (including measurement methods and interpretation of test systems) as well as ability to apply mathematical modeling and statistical techniques to represent these data.

A more detailed description of the position and instructions to apply can be found on http://www.usajobs.gov. Enter the job announcement number RTP-DE-2009-0263 in the job title/keyword search area.

The position is that of Biologist/Toxicologist/Phy Scientist, GS-401/415/1301-12/13




Posted 10/22/09

Assistant Professor, Tenure Track Faculty
University of South Carolina Beaufort (USCB)

The Department of Science and Mathematics at the University of South Carolina Beaufort (USCB) invites applications for a tenure-track faculty position in Computational Biology beginning August 2010. Candidates must have an earned doctorate in Computer/Computational Science with advanced training in Bioinformatics and/or Biofabrication, and preferred candidate should have the ability to establish and maintain an externally-funded research program in his/her discipline, a strong commitment to undergraduate teaching, and excellent communication skills. Start up funds are available, along with a shared supercomputing research core facility. The normal teaching load at USCB is 12 credit hours per semester (an external research award will result a 25% course release), but the new hire will receive partial course release for the first three years, and will be expected to teach a 25% load for the first year, 50% and 75% for the second and third year. Responsibilities also include research and professional and university service. Salary is competitive and commensurate with qualifications and experience. Summer school teaching is possible on an as needed basis.

Applicants should send a cover letter, curriculum vitae, research statement, teaching philosophy, three letters of recommendation (with at least one letter addressing teaching), and copies of undergraduate and graduate transcripts.

Application procedures: Applicants must complete the Academic Personal Information form on-line at https://uscjobs.sc.edu. Please see the Special Instructions to Applicants in the on-line system job posting. Items required which cannot be submitted electronically should be mailed to Chair, Computational Biology Search Committee, c/o Human Resources, University of SC Beaufort, One University Boulevard, Bluffton, SC 29909. Official undergraduate and graduate transcripts must be mailed directly from the institutions to USCB. If you have any problems or questions using the on-line system please contact the USCB Human Resources Office at 843 208-8144 for assistance.

Review of applications will begin November 2009. Application deadline is December 15, 2009.

The University of South Carolina Beaufort is an affirmative action/equal opportunity institution. Women and minorities are encouraged to apply.




Posted 10/12/09

Postdoc & Senior Research Positions: Computational Cell Biology
UCD, Dublin

Postdoctoral and senior research positions in COMPUTATIONAL CELL BIOLOGY - Systems Biology Ireland, UCD, Dublin.

We seek outstanding candidates on junior and senior levels to work on computational modeling of signaling and gene networks in mammalian cells at Systems Biology Ireland, University College Dublin. Ongoing projects include the temporal and spatial dynamics of receptor tyrosine kinase signaling and transcriptional networks that govern cell proliferation, differentiation and motility (supported by a multi-PI grant to Profs. Boris Kholodenko, Walter Kolch and Zoltan Neufeld). The successful applicant will work closely with experimentalists at the interface between mathematics, engineering and biology in a multi disciplinary research community at Systems Biology Ireland. This presents a unique opportunity for creative individuals who want to work at the cutting-edge of systems biology.

You will be a part of an interdisciplinary team with national and international collaborations in the field of systems biology. The following skills and qualifications are required: 1) PhD in Biophysics, Chemical Engineering, Mathematics, or Biochemistry and evidence of practical work experience in the systems biology of signal transduction; 2) knowledge and experience of advanced mathematical modelling, including non-linear systems and non-linear dynamics, and 3) basic knowledge of cell/molecular biology. Understanding of probability theory and statistics is a plus. The complexity of the relevant problems requires at least a two years initial commitment.

Benefits and salary commensurate with experience. Individuals with an interest in Systems Biology are encouraged to apply.

Salary Scale: 40,000 - 50,000 Euro; for experienced researcher up to 76,000.

Informal enquiries are welcome, please send them including CV to systemsbiology@ucd.ie. For formal applications use http://www.ucd.ie/hr/jobvacancies/

Closing date: 23.30hrs on Friday, 23rd October 2009

NOTE: Applications must be submitted by the closing date and time specified. UCD are unable to accept late applications. Please note at this time UCD do not require assistance from Recruitment Agencies - Any CV's submitted by Recruitment Agencies will be returned. All current recruitment which is taking place within UCD is dependent on non-Exchequer, external and self-funding sources of finance.

UCD is an equal opportunities employer




Posted 10/12/09

Two Postdoc Positions
Mathematical Institute, University of Oxford

TWO POSTDOCTORAL RESEARCH POSITIONS
Oxford Centre for Collaborative Applied Mathematics
Mathematical Institute, University of Oxford

We invite applications for two three-year postdoctoral research positions, funded by the European Research Council Starting Grant awarded to Dr Radek Erban. The successful candidates will work with Dr Erban at the Oxford Centre for Collaborative Applied Mathematics (OCCAM) which is part of the Mathematical Institute, University of Oxford. Both positions are available from 1st January 2010 or as soon as possible thereafter.

Project: Stochastic modelling of reaction-diffusion processes:

Project: Chemical Fokker-Planck equation and multiscale:

Closing Date: 27 November 2009




Posted 10/12/09

PhD and Postdoc Positions
KU Leuven

The research division SISTA (Signals, Identification, System Theory and Automation) (http://www.esat.kuleuven.be/scd/) is one of the largest research groups of the Department of Electrical Engineering and of the University of Leuven, Belgium (www.kuleuven.be).

Our research activities drive on numerical linear algebra, system identification and control, algorithms for numerical optimization and machine learning (support vector machines) and signal processing.

We also have numerous applications in industrial process control, biomedical signal processing, bio-informatics, health decision support systems and telecommunications. We are looking for well motivated researchers to start a 4 year PhD or for experienced postdocs to pursue research activities in these fields and application areas.

On our website (http://www.esat.kuleuven.be/scd/), one can find a description of more than 20 different specific research topics, in which we have openings for PhDs and postdocs. We can offer a competitive salary, a stimulating research environment, settled in the nice historic city of Leuven and its surroundings (http://www.leuven.be/showpage.asp?iPageID=1688), within a university the origins of which go back to 1425.

Electronic applications, including a CV, a list of publications, names of two possible references, and a brief description of your research interests and motivation, should be submitted to bart.demoor@esat.kuleuven.be




Posted 10/12/09

Postdoctoral Research Fellowship
University of Texas at Austin

Post-Doctoral Research Fellowship, Computational Bioelectromagnetics, UT-Austin

The Institute for Computational Engineering and Sciences (ICES) at the University of Texas at Austin has a post-doctoral research fellowship position immediately available in the area of high performance scientific computation as applied to bioelectromagnetics (BIOEM). The project goal is to develop efficient BIOEM algorithms and solvers on petascale computers for high-resolution simulations of wireless devices near the human body.

The applicant must have research experience in computational electromagnetics, high performance computing, and numerical techniques in general. The successful applicant is expected to have significant programming experience with Fortran, C, MPI, and/or OpenMP, working knowledge of Linux/Unix, and familiarity with iterative and direct solvers, high-order methods, boundary- and finite-element methods, and fast and parallel algorithms.

Appointments are for up to 3 years. Competitive salary and compensation package is offered. To apply, please send a CV to Dr. Ali Yilmaz (ayilmaz@mail.utexas.edu).




Posted 10/12/09

Two Faculty Positions
Lehigh University

Department of Industrial and Systems Engineering Lehigh University

The department invites applications for two faculty positions, one tenure-track at the Assistant Professor level and one at the level of Full or Associate Professor. We welcome applications from individuals with strong backgrounds in any ISE-relevant discipline, including industrial engineering, operations research, systems engineering, and computer science. Candidates for the junior position with strength in large-scale optimization that utilizes high-performance computing and/or expertise in energy, healthcare, bioinformatics, or similar application areas are especially encouraged to apply. Candidates for the senior position with strengths in healthcare, bioinformatics, bioengineering or similar application areas are especially encouraged to apply. The candidate must demonstrate a strong commitment to undergraduate and graduate education, conduct an active research program with strong external support, and be willing to explore interdisciplinary research opportunities within the college and university.

The department is undergoing significant growth in various areas of operations research and computing. Current research thrusts include (1) optimization, (2) high-performance computing, (3) supply chain management, (3) manufacturing, production, and logistics, (4) financial engineering, and (5) stochastic processes. Recent hires at the junior level have joined the Department in these and related areas with specializations in computational optimization, parallel and grid computing, robust optimization, financial engineering, and supply chain analysis.

Established in 1926, the ISE Department currently has 17 full-time faculty members, 150 undergraduate and 130 graduate students, 40 of whom are Ph.D. students. We offer comprehensive research and education programs at the B.S., M.S., and Ph.D. levels. The ISE faculty maintains an outstanding international reputation in a variety of research areas. Active research topics include discrete optimization, nonlinear optimization, interior point methods, conic linear optimization, high performance computing, financial engineering, and a variety of topics in logistics and supply chain analysis.

The Department maintains excellent computational and laboratory facilities, including a 96-processor parallel computing cluster and other associated computing facilities housed at the Laboratory for Computational Optimization Research. The department is also linked to powerful central facilities dedicated to high performance computing through a campus-wide computational grid. Annual research expenditures exceed $3 million. The Department has extensive interdisciplinary ties with the business school through the Center for Value Chain Research, and with the finance and mathematics departments through the Analytical Finance program.

Review of applications will begin December 1, 2009 and will continue until the position is filled. Please visit our department web site www.lehigh.edu/ise and follow the application submission link. The application should include a cover letter, a statement of research and teaching interests, a curriculum vita, names and addresses of at least three references, and representative research paper(s). Inquiries may be addressed to Professor Ted Ralphs, Search Committee Chair, Ted@Lehigh.edu.

Lehigh University is an affirmative action/equal opportunity employer and provides equal opportunity on the basis of merit without discrimination because of race, color, religious creed, ancestry, national origin, age, handicap, gender, sexual orientation, or union membership.




Posted 10/09/09

Faculty Positions
The Hong Kong University of Science and Technology

The Department of Computer Science and Engineering is one of the largest departments in the School of Engineering. The Department currently has 40 faculty members recruited from major universities and research institutions around the world, with about 1000 students (including 600 undergraduate and 170 postgraduate students). The medium of instruction is English. More information on the Department can be found at http://www.cse.ust.hk/.

The Department will have at least two tenure-track faculty openings at Assistant Professor/Associate Professor/Professor levels for the 2010-2011 academic year. We are looking for faculty candidates with interests in multidisciplinary research areas related to computational science and engineering such as bioinformatics and financial engineering. Strong candidates in core computer science and engineering research areas (including software engineering, embedded systems, cloud and distributed computing) will also be considered. Applicants at Assistant Professor level should have an earned PhD degree and demonstrated potential in teaching and research.

Salary is highly competitive and will be commensurate with qualifications and experience. Fringe benefits include medical/dental benefits and annual leave. Housing will also be provided where applicable. For appointment at Assistant Professor/Associate Professor level, initial appointment will normally be on a three-year contract, renewable subject to mutual agreement. A gratuity will be payable upon satisfactory completion of contract.

Applications should be sent through e-mail including a cover letter, curriculum vitae (including the names and contact information of at least three referees), a research statement and a teaching statement (all in PDF format) to csrecruit@cse.ust.hk. Priority will be given to applications received by 28 February 2010. Applicants will be promptly acknowledged through e-mail upon receiving the electronic application material.




Posted 10/05/09

NIH Research Jobs
NIH

Tenured or Tenure-Track
Systems Biology, Trans-NIH Initiative (multi-institute)
(deadline: November 1*)

The NIH Intramural Research Program (IRP) is recruiting outstanding systems biologists at the tenure-track or tenured levels. These individuals will direct independent research programs on the NIH campus in Bethesda, MD and participate in a Trans-NIH Initiative in Systems Biology promoting interaction between experimentalists, theoreticians and computational investigators. Candidates will have demonstrated an ability to conduct outstanding independent biomedical research on key topics in systems biology such as computational modeling of biological processes at various scales, analysis of global datasets, construction and analysis of biological networks, and 'omic' scale interrogation of biological systems. The internationally recognized NIH faculty covers a wide range of basic and clinical research topics with a growing strength, support and emphasis on systems biology and informatic approaches to biomedicine.

The NIH IRP promotes creative and innovative science unconstrained by the conventional support mechanisms demanded at academic or private research institutes. Investigators have ready access to and support from state-of-the art experimental and computational cores and facilities, and a variety of programs to recruit graduate students and post-doctoral fellows.

Candidates must have an M.D. and/or Ph.D., or equivalent doctoral degree, and an outstanding record of research accomplishment and peer-reviewed publications. Recruits will be provided a competitive salary commensurate with experience and qualifications, and will be assigned ample research space, supported positions, operating budget, and start-up funds. Appointees may be US citizens, resident aliens, or eligible foreign nationals. Review of applications will commence on November 1, 2009, and continue until the positions are filled. Please submit a curriculum vitae, brief (not to exceed 3 pages) statement of research interests that includes how you see your research group helping to create a world-class, integrated systems biology effort at NIH, and three letters of reference in .pdf or MS word format only (no paper applications will be accepted) to: http://tenuretrack.nih.gov/apply/. The NIH is dedicated to building a diverse community in its training and employment programs.


Staff Scientist
Neuro-Oncology Branch, NCI
(deadline: open-ended)

The Neuro-Oncology Branch, a trans-institute program of the National Cancer Institute and the National Institute of Neurological Disorders and Stroke of the National Institutes of Health, is recruiting a Staff Scientist to work in the area of cancer genomics and bioinformatics. The successful candidate should have a M.D. or Ph.D. degree and at least 3 years of post-doctoral training in molecular genetics and informatics. The position includes the scientific leadership and management of a team of molecular biologists and bioinformaticians involved in the generation and scientific exploration of a large primary brain tumor and cancer tumor stem cell genomics and gene expression data repository and the translation of those discoveries to patients through the highly integrated clinical brain tumor research program of the Neuro-Oncology Branch. Experience in advanced cDNA microarray, Affymetrix-based expression array and SNP array analysis would be highly desirable.

Please send curriculum vitae, statement of research interests and two letters of reference to: Karen B. Abraham, Administrator; Neuro-Oncology Branch, National Cancer Institute; MSC 8200, Room 225; 9030 Old Georgetown Road; Bethesda, MD 20892-8200 or to abrahamka@mail.nih.gov. Candidates may be U.S. citizens, resident aliens, or nonresident aliens. DHHS, NIH, the National Cancer Institute and the National Institute of Neurological Disorders and Stroke are Equal Employment Opportunity and Affirmative Action employers that value and foster diversity throughout the entire organization.


Link to Fellowships, Staff Scientist and Tenured/Tenure-Track Research Positions:
http://www.training.nih.gov/

Link to NIH Jobs:
http://www.jobs.nih.gov/

Searchable database of all NIH intramural research projects:
http://intramural.nih.gov/search/index.tml




Posted 10/05/09

Tenure-stream Position
Colgate University

The Departments of Biology and Mathematics of Colgate University seek a tenure-stream Assistant Professor for a joint position in Biology and Mathematics to start August 2010. PhD or expectation of completion this academic year required; teaching and postdoctoral research experience desirable.

The successful candidate will develop a Systems Biology course for biology and mathematics students and contribute to existing or new courses in biology or mathematics, depending upon expertise. The successful candidate will also be expected to participate in university-wide programs, including the Liberal Arts Core Curriculum.

We are deeply committed to excellence in teaching and research, including involving undergraduates in research. The appointee will add to this effort by mentoring undergraduate research students in their area of interest. Colgate offers excellent teaching and research facilities. Opportunities also exist to lead semester-long programs at the NIH or abroad.

Please submit an application with cover letter, curriculum vitae, transcripts, and separate statements of teaching philosophy and research interests to either www.academicjobsonline.org or www.mathjobs.org. Also arrange to have three letters of recommendation submitted. Review of applications will begin December 1 and continue until the position is filled. We intend to begin interviewing candidates by the end of January.

Colgate University is an equal opportunity/affirmative action employer. Developing a diverse faculty and staff furthers the University?s academic mission for our increasingly diverse student body. Applicants with dual-career considerations can find postings of other employment opportunities at Colgate and at other institutions of higher education in upstate New York at www.upstatenyherc.org.




Posted 10/05/09

Postdoctoral Fellow: Computational Biology
Washington State University

Postdoctoral Positions are available in the laboratory of Dr. Ping Ye in the School of Molecular Biosciences at the Washington State University. Our laboratory utilizes computational and experimental approaches to investigate systematic behaviors of cellular responses. Particularly we are interested in engineering temperature sensitive mutations as a conditional control gene expression system and investigating meiosis dynamics. We apply a two-pronged computational approach, bioinformatics data mining and mechanistic mathematical modeling. Our main experimental systems include unicellular eukaryote yeast and mammalian cell culture.

Previous experience in bioinformatics research (probabilistic graphical models and machine learning methods) or mathematical modeling (ordinary differential equations, stochastic models, and agent-based models) is required. Proficiency in programming languages, such as Perl, C, C++, R, MATLAB, is preferred.

Interested applicants please send a CV and contact information for three references to Dr. Ye by email pye@wsu.edu.




Posted 10/05/09

Postdoctoral Positions: Theoretical & Computational Projects
College of William and Mary and at the University of Virginia

Theoretical Modeling of the Dynamics of the Pacing Systems of Heart and Respiration of Infants in Neonatal Intensive Care Units

One or two postdoctoral positions are available for a theoretical and computational project at the College of William and Mary and at the University of Virginia in collaboration with UVA Medical Center. The project focuses on the development of predictive models of the cardiorespiratory system from continuous EKG, respiratory, and SpO2 signals for infants at high risk of apnea of prematurity (AOP). AOP is one of the most common serious disorders of premature infants, and there exists a substantial clinical need for automated detection and prediction of future episodes from physiological waveforms.

Specific projects tasks: (1) collection of a 10 TB waveform database from infants admitted to UVA Medical Center NICU; (2) creation of pattern recognition algorithms; (3) statistical analysis of collected physiological data; and (4) modeling the coupling between respiration, heart rate and blood pressure by methods of modern nonlinear dynamics. Excellent programming skills (C/C++/Matlab/Matlab GUIDE/SQL) required. Expertise in nonlinear dynamics and signal processing is strongly desired.

Send applications to jbdelo@wm.edu or to hudson@virginia.edu

http://web.wm.edu/physics/DelosWeb/index.php
http://faculty.virginia.edu/hudson/

John B Delos
Physics Department
College of William and Mary
Williamsburg, VA, 23187-8795

John L Hudson
Chemical Engineering Department
University of Virginia
Charlottesville, VA 22904-4741

The College of William and Mary and the University of Virginia are state supported universities and EEO/AA employers.




Posted 10/05/09

Postdoctoral Instructorships
CAAM, Rice University

Postdoctoral Instructorships
Department of Computational and Applied Mathematics,
Rice University

The Department of Computational and Applied Mathematics, www.caam.rice.edu, invites applications for postdoctoral instructorships including Pfeiffer-VIGRE Instructorships. All instructors in the Department are appointed for two academic years, with possible extension for a third year. The term of appointment may begin at any time after January 1, 2010. Candidates should have received a PhD within 18 months preceding the time of appointment and have demonstrated potential for excellence in both research and teaching. Candidates must be US citizens or permanent residents.

Instructors teach one lecture course each semester, and conduct research in collaboration with a faculty mentor. The Pfeiffer-VIGRE Instructorships honor Professor Emeritus Paul Pfeiffer, a founding member of the department, and are a component of the Rice VIGRE program. Pfeiffer-VIGRE instructors work with a team of faculty and graduate and undergraduate students in one of the VIGRE research areas. Research areas currently targeted for these appointments, including Pfeiffer-VIGRE instructorships, include mathematical biology, inverse problems, and numerical solution of partial differential equations.

Rice University is a private research university with a long tradition of excellence in undergraduate and graduate science and engineering education. The Department of Computational and Applied Mathematics hosts research programs in optimization, numerical linear algebra, control and inverse problems, mathematical biology, and partial differential equations. Interdisciplinary work is a fundamental aspect of the Department's program.

Applicants should send a letter of application, current vita, and descriptions of research plans and teaching experience to:

Staffing Committee - Postdoctoral Instructorships
Department of Computational and Applied Mathematics
MS 134
Rice University
6100 Main Street
Houston Texas 77005-1892

At least three letters of reference are required; the candidate should have these sent directly to the above address.

Rice University is an Affirmative Action, Equal Opportunity institution.




Posted 10/05/09

Postdoc Positions: Mathematical Epidemiology
University of Miami

University of Miami
Department of Mathematics
Post Doctoral Associate Positions

The Department of Mathematics at the University of Miami is seeking applicants for two Postdoctoral Associate positions in Mathematical Epidemiology, starting date flexible Fall 2009/Spring 2010. The goal of this interdisciplinary project, funded by the National Institute of General Medical Sciences/NIH, is to integrate individual-patient data with mathematical modeling to provide population-level analysis of the spread of antimicrobial-resistant bacteria (ARB) in hospital settings.

The first position will focus on development of mathematical models applied to characterize the superspreaders of antimicrobial-resistant bacteria, the subgroup of patients responsible for the majority of ARB spread. It will also involve developing theory relating to the transmission dynamics and persistence of antimicrobial-resistant bacteria (ARB) in hospital settings. The second position will involve analyzing individual-level patient data obtained from an extensive integrated online medical record system of over one million hospitalized patients using statistical and computational methods. Work will be carried out under the supervision of Dr. Shigui Ruan (http://www.math.miami.edu/~ruan).

Applicants should hold a PhD in Applied Mathematics or a related field with strong modeling, analytic, computational, or statistical skills. Previous experience in the modeling and analysis of ecological/epidemiological systems, or previous collaborations with experimentalists (biologists, ecologists or epidemiologists) will be preferred. Salary is in the range of $36,996-40,000 per year (depending on experience) plus fringe benefits. For further information about these projects, please contact Dr. Shigui Ruan (ruan@math.miami.edu). Applicants must apply online. In addition, send a detailed CV, together with a cover letter stating your research interests and three reference letters to Dr. Shigui Ruan, Department of Mathematics, University of Miami, Coral Gables, FL 33124-4250, USA. Electronic applications are encouraged. Review of applications will start immediately and will continue until the positions have been filled.

The University of Miami is an Affirmative Action/Equal Opportunity Employer.




Posted 10/05/09

Postdoctoral Position in Systems Biology
University of Iceland

The Center of Systems Biology, University of Iceland (www.systemsbiology.is, CSB UoI), is looking to recruit a highly motivated postdoctoral fellow to join a growing effort focusing on systems biology of human metabolism. The research at the CSB UoI focuses on 1) human metabolism and 2) industrial biotechnology. The Center is an interdisciplinary center with the Schools of Medicine, Engineering and Natural Sciences participating. The CSB UoI aims to characterize human disease using a systems biology approach. This research effort focuses on 1) expanding the currently available human metabolic reconstruction, 2) discovery of new functions and pathways in human metabolism using computational and experimental techniques, 3) phenotyping of human cell lines using metabolomic techniques, 4) computational and experimental analysis of metabolic changes associated with disease, and 5) high-throughput drug screening. We use the state-of-the-art computational methods to guide and design human cell culturing experiments as well as metabolomic measurements. These technologies are embedded in a biologically driven research program that aims at systematic understanding of human metabolism, disease manifestation and drug target identification.

The successful candidate will be expected to work on expanding the human metabolic reconstruction and lead the computational gap filling effort. The postholder will also mine databases and genomic information, participate in protein annotation of this human metabolism project and will be expected to provide curation and quality control for the protein functional annotation framework. In addition, the postholder will be part of a team to develop quantitative tools required to expand mass spectrometry capabilities and integrative bioinformatics at the CSB UoI.

The ideal candidate will hold a PhD in Bioinformatics or related field and have a strong background in biology as well as computational modelling. All projects at the CSB UoI are interdisciplinary; therefore, a strong motivation to collaborate with experimental groups is required. Programming skills and knowledge of computational methods used in systems biology are required. Knowledge of human metabolism and drug metabolism will be advantage. Individuals with backgrounds in metabolic network reconstruction or metabolic engineering are especially encouraged to apply. Furthermore, the candidate must be fluent in English. Additionally, the candidate must have excellent communication and interpersonal skills and be capable of working within a team of biologists and programmers.

The position is available immediately. Please send a cover letter, a brief description of research experience and interests, a curriculum vitae and contact information for three references in pdf file form to Professor Ines Thiele ( systemsbiology@hi.is ). All applications will be answered and applicants will be informed about the appointment when a decision has been made. Salary for the positions will be according to collective wage and salary agreement.

Appointments to the University of Iceland do take into account the Equal Rights Project of the University of Iceland.




Posted 09/29/09

Senior Research Position: Systems Biology
UCD

Senior Research Position in Systems Biology analysis of the Hypoxic Response in Stem Cells.

We are seeking a Senior Researcher with four or more years postdoctoral experience in biochemistry/pharmacology/physiology/cell biology or related disciplines. The successful candidate will have an excellent track record of publications in top quality international journals and demonstrable leadership skills. In addition to lab based studies, the candidate will be expected to take a lead role in the mentorship and support of postgraduate students.

The post will involve close collaboration with Prof. Cormac Taylor in a study aimed at using a systems biology approach to understanding how hypoxia impacts upon key decision making processes in stem cells. An in depth understanding of the biology of hypoxia and/or stem cell differentiation will be an advantage. The project is a component of Systems Biology Ireland, a multidisciplinary initiative which presents a unique opportunity for creative individuals who want to work at the cutting-edge of systems biology.

Benefits and salary commensurate with experience. Individuals with an interest in the utilisation of Systems Biology to understand basic physiologic processes are encouraged to apply.

Informal enquiries are welcome, please send them including CV to systemsbiology@ucd.ie. For formal applications use: http://www.ucd.ie/hr/jobvacancies/ Closing Date: 23.30 on Friday, 30 October 2009

NOTE: Applications must be submitted by the closing date and time specified. UCD are unable to accept late applications Please note at this time UCD do not require assistance from Recruitment Agencies - Any CV's submitted by Recruitment Agencies will be returned. All current recruitment which is taking place within UCD is dependent on non-Exchequer, external and self-funding sources of finance.




Posted 09/29/09

NIH-Wide Principal Investigator Recruitment
NIH

The National Institutes of Health, the nation's premier agency for biomedical and behavioral research, is pleased to announce the launch of its search for top-tier tenure-track candidates to become "NIH Earl Stadtman Investigators." Earl Stadtman was an outstanding NIH scientist who mentored many current leaders in the biomedical community. In his honor, the NIH is recruiting basic, clinical and population-based investigators who seek the flexibility of scientific exploration in an intellectual and supportive environment. NIH investigators have the ability to focus on research that is high risk; they can quickly redeploy resources to explore new directions, collaborate freely on multidisciplinary teams, and contribute to the NIH mission of improving human health. The receipt of prestigious awards and honors-Nobel prizes, Lasker awards, elections to the NAS and IOM, among others-demonstrates the scientific rigor of our NIH intramural investigators. We offer competitive startup packages and a collaborative, academic environment with more than 1,100 principal investigators engaged in cutting-edge basic, translational, clinical and population-based research. Our scientists focus entirely on their research with ample opportunities to mentor and train outstanding fellows at all levels. One special feature of our research program is the NIH Clinical Center, the world's largest hospital entirely devoted to biomedical research.

Qualifications/Eligibility: Candidates must have an M.D., Ph.D., D.D.S./D.M.D., D.V.M, D.O. or equivalent doctoral degree and have an outstanding record of research accomplishments as evidenced by publications in major peer-reviewed journals. Preference will be given to applicants who are in the early stages of their research careers. Candidates in any area of biomedical, clinical and behavioral research are invited to apply. Appointees may be U.S. citizens, resident aliens or non-resident aliens with, or eligible to obtain, a valid employment-authorized visa.

Salary: Successful candidates are offered competitive salaries commensurate with experience and qualifications, and they are assigned ample research space, supported positions and an operating budget.

To Apply: Complete applications should be received by November 1, 2009; however, applications will be accepted until available positions are filled. Interested applicants should submit a curriculum vitae, a three-page description of proposed research, and three letters of recommendation through our online application system, at http://tenuretrack.nih.gov. No paper applications will be accepted.For information on the NIH Intramural Research Program, refer to http://intramural.nih.gov/search and http://www1.od.nih.gov/oir/sourcebook/sci-prgms/sci-prgms-toc.htm. Specific questions regarding this recruitment effort may be directed to Dr. Roland Owens, Assistant Director, NIH Office of Intramural Research at owensrol@mail.nih.gov.We seek original and interactive thinkers to be part of the next generation of research leaders. Become part of a team that continues to make history. DHHS and NIH are Equal Opportunity Employers.




Posted 09/29/09

Postdoc: Computational Analysis of Influenza Structural Evolution
University of Pennsylvania

Post-doc Opportunity for Computational Structural Biologist:
Analysis of Influenza structural evolution

A postdoctoral fellowship (2-3 years) is available in the research group of Dr. Joshua B. Plotkin at the University of Pennsylvania (http://mathbio.sas.upenn.edu/), for an NIH-funded project on the structural evolution of Influenza viral proteins.

The research project aims to provide a rational basis for choosing annual vaccine strains by combining phylogenetic sequence analysis with computational structural biology. The post-doctoral fellow will employ homology modeling to estimate three-dimensional protein structures for thousands of sequenced influenza A hemagglutinin variants.

Requirements for the position include: familiarity with computational methods for estimating three-dimensional protein structures, by homology modeling or other techniques; a PhD in structural biology, mathematics, physics or related areas; excellent communication skills. The ideal candidate should also be familiar with scientific programming. Candidates interested in computational analysis of protein structures, but lacking detailed experience in this field, will also be considered.

The postdoctoral fellowship provides a competitive annual stipend plus benefits and health insurance. Start date is immediate. Applications are welcome from candidates of any nationality, and they will be reviewed immediately.

The Penn Genome Frontiers Institute offers an outstanding intellectual environmental. Research at the Institute addresses basic questions in biology through genomic, computational, and modeling approaches. Collaborations among research groups and across the broader Penn community are common. The Institute is housed in the newly constructed Lynch research building.

Applicants are encouraged to email a statement of research interests, CV, and contact details for three references to jplotkin (at) sas.upenn.edu.




Posted 09/29/09

EPSRC funded Postdoc: Mathematics Applied to Biology
Sussex

You can find full details of the PostDoc position by following either of the two links below:

http://www.sussex.ac.uk/Units/staffing/personnl/vacs/vac668.shtml
or
http://www.jobs.ac.uk/jobs/RQ848/Research_Fellow/




Posted 09/29/09

Postdoc: Biomathematical Modeling
University of Rochester School of Medicine & Dentistry

Department of Biostatistics and Computational Biology at University of Rochester School of Medicine& Dentistry has an immediate opening for one postdoctoral fellow position in biomathematical modeling.

The potential candidates are expected to have a background in biomathematics, applied mathematics, biocomputing or engineering (Ph.D. required). Preference will be given to the candidate with strong background and experience in immunology, virology or other biomedical sciences. The candidate is expected to collaborate with immunologists and virologists to develop mathematical models for the investigation of immune response to viral infections. Good communication skills are required. The scientific environment is conducive to professional development. For an experienced candidate, it is possible to be appointed as a research faculty.

Please send CV, three references and other supporting materials to:




Posted 09/29/09

Postdoc: Mathematical Ecology
University of Helsinki

The Biomathematics Group of the Department of Mathematics, University of Helsinki, Finland, is looking for a highly motivated candidate with background in mathematical modelling and prior work in mathematical ecology/evolution to join our group as a postdoc. PhD in mathematics or PhD in a related field with strong and demonstrated mathematical background is required. Applicants with their own research programme proposal are at an advantage.

The position is available within the Finnish Centre of Excellence in Analysis and Dynamics Research for 1 year with the possibility of a 2-year extension, supervised by Prof. Mats Gyllenberg and one of the senior group members Stefan Geritz, Eva Kisdi, Yi Wang and Ping Yan. Salary and social benefits according to the standard Finnish University Salary System, starting salary 2838 - 3148 euros. The starting date is negotiable.

Our research areas include structured population dynamics, adaptive dynamics, dynamical systems, and applications thereof. We offer an international research environment and wide-ranging possibilities to cooperate with experts in mathematical physics, geometric measure theory, operator theory, stochastic differential equations etc. in the Centre of Excellence in Analysis and Dynamics. For more information, see http://mathstat.helsinki.fi/research/biomath/ (Biomathematics Group), http://wiki.helsinki.fi/display/huippu/ (Centre of Excellence), and http://mathstat.helsinki.fi/english/ (Department of Mathematics); with specific queries, contact Eva Kisdi at eva.kisdi@helsinki.fi.

Applications including a CV, list of publications, a letter of motivation or research proposal, and two reference addresses are to be sent to eva.kisdi@helsinki.fi with a cc to mats.gyllenberg@helsinki.fi. Please write "Application for postdoc position in biomathematics" in the subject line. Evaluation will start immediately and continue until the position is filled.




Posted 09/29/09

ostdoc: Center for Infectious Disease Dynamics
Penn State

The Center for Infectious Disease Dynamics (CIDD) at The Pennsylvania State University is seeking to hire a qualified researcher to collaborate on the computational modeling of policy systems and infectious disease management at international borders. Applicants should have significant research experience with computational or mathematical modeling. We particularly seek candidates who have agent-based modeling knowledge, communication skills, and interests in interdisciplinary collaborations among social, biological, and computational sciences. CIDD brings together theoreticians and empirical scientists and researchers in a wide variety of disciplines to collaborate and innovate in the area of infectious disease research around the world. Sixteen faculty, eighteen postdocs, fifteen graduate students are playing leading roles in integrating genetic, immunological, ecological and other studies to understand how disease processes work and how they inter-relate across scales. Qualified applicants from a broad selection of disciplines will be considered. A Ph.D. is required.

Qualified candidates should send their curriculum vitae, a brief description of their research and interests and arrange for three letters of reference to be sent to: Timothy Reluga (email: treluga@math.psu.edu) Department of Mathematics, The Pennsylvania State University, University Park, PA 16802. Review of applications will begin October 15, 2009 and will continue until the position is filled.

Penn State is committed to affirmative action, equal opportunity and the diversity of its workforce.




Posted 09/29/09

Postdoc Position in Numerical Simulation
Heidelberg University

Herewith, I would like to draw your attention to the following open post-doctoral position in the research project "Numerical Methods for the accurate and efficient simulation of multiphase multicomponent flow in the capillary fringe".

Capillary fringes are highly dynamic zones at the interface between the water-saturated aquifer and vadose zone, where steep biogeochemical gradients and thus highly variable bioactivities are expected. Since the accessibility of capillary fringes in the field is very limited, precise in-situ data on gradients or activities are not yet available.

The task of the post-doctoral researcher is to develop a mathematical model of the complex processes in the capillary fringe including flow of two immiscible phases, transport of components, phase exchange, (bio-)chemical reactions, air entrapment, hysteresis and to implement this model in a parallel high-performance computing environment (www.dune-project.org).

The project is part of the Research Unit DFG 831 (FOR 831) "Dynamic capillary fringes - A multi-disciplinary Approach" funded by Deutsche Forschungsgemeinschaft. Besides the Parallel Computing group at the Interdisciplinary Center for Scientific Computing of the University of Heidelberg, Germany, this research unit involves experimental groups at the Universities in Karlsruhe, Tübingen and Heidelberg

We seek an individual with a strong background in modeling of flow and transport in porous media and computational science who is interested to work in an interdisciplinary group. Programming skills in C++ are mandatory. The post-doctoral researcher will work in Heidelberg and interact regularly with the groups in Karlsruhe and Tübingen. The position is available for two years on salary level TV-L 13. Starting date could be as early as October 1st, 2009.

For more information, please mail Prof. Dr. Peter Bastian, peter.bastian@iwr.uni-heidelberg.de or Dr. Olaf Ippisch, olaf.ippisch@iwr.uni-heidelberg.de

Applications, with CV, can be sent toingrid.hellwig@iwr.uni-heidelberg.de




Posted 09/29/09

Term-Limited Faculty Position
Tufts University

Applications are invited for a term-limited Assistant Professorship to begin September 1, 2010. The initial contract will be for one year, renewable for an additional two years. A Ph. D. in Mathematics or a closely related field, evidence of strong teaching, and promise of strong research are required, with a research focus in computational methods for nonlinear inverse problems. The teaching load will be two courses per semester.

The successful candidate will be expected to join current interdisciplinary research efforts focused on developing efficient and accurate mathematical and computational tools for solving large-scale nonlinear inverse problems, such as those that arise in biomedical and geophysical applications. Candidates with a background in computational PDEs are especially encouraged to apply, but candidates with experience in other areas related to nonlinear inverse problems will also be considered.

Applications should include a cover letter, curriculum vitae, research statement and teaching statement, which should all be submitted throughwww.mathjobs.org. In addition, applicants should arrange for three letters of recommendation to be submitted through www.mathjobs.org. If a recommender cannot submit online, we will accept signed PDF attachments sent to Scott.MacLachlan@tufts.edu, or paper letters mailed to CIP Search Committee Chair, Department of Mathematics, Bromfield-Pearson Hall, Tufts University, Medford, MA 02155. Review of applications will begin on Dec. 15, 2009 and will continue until the position is filled. Tufts University is an Affirmative Action/Equal Opportunity employer. We are committed to increasing the diversity of our faculty. Members of underrepresented groups are strongly encouraged to apply.




Posted 09/29/09

Faculty Position in the Math/CS Dept.
Santa Clara University

The Department of Mathematics and Computer Science at Santa Clara University (math.scu.edu) invites applications from candidates with expertise in scientific computation or statistics and interest in mathematical biology, computational physics or chemistry, or environmental science. Tenure track Assistant Professor position available starting in September 2010. Ph.D. or equivalent required. This position is contingent on available funding. Undergraduate teaching only. [Teaching load is 7 courses on a quarter system (a course release is usually given for active research).] Santa Clara University, located in California's "Silicon Valley", is a Jesuit, Catholic institution, emphasizing education in the liberal arts and sciences and an AA/EEO employer. Application deadline is January 20, 2010. Search committee members will be available to meet with potential applicants at the January 2010 Joint Mathematical Meetings in San Francisco. For more information regarding application submissions, see www.scu.edu/hr/careers/faculty.cfm. Applications may be emailed to the department chair, Dennis C. Smolarski, S.J. atdsmolarski@scu.edu.




Posted 09/22/09

Professor and Head: Department of Mathematical Sciences
Rensselaer Polytechnic Institute

The School of Science at Rensselaer Polytechnic Institute invites applications or nominations for the position of Professor and Head, Department of Mathematical Sciences. An individual is sought who can provide strong, dynamic and innovative leadership for advancing excellence in research, teaching, and activities in the mathematical sciences community. The successful candidate should have an established national and international reputation in research, and have a distinguished record of academic and professional leadership.

The Department has built a strong reputation in applied mathematics, including modeling, analysis, numerical methods, and operations research. This has been achieved through the impact of research, quality of the students, and commitment of the department to education. Another component is intellectual leadership, and on-campus examples include the integral contributions the math faculty are making to the Inverse Problems Center, the Bioinformatics Center, the Center for Subsurface Sensing and Imaging Systems, and the Exploratory Center for Cheminformatics Research. The research in the Department has a significant interdisciplinary component, and many of the faculty have strong, active links with other departments, national labs and industry. Moreover, Rensselaer has undergone an unprecedented growth in faculty and research facilities, through a successful billion-dollar capital campaign. A recent significant example is the new Computational Center for Nanotechnology Innovations, which houses one of the most powerful university-based computing facilities.

The position is available beginning Fall 2010, with competitive salary and benefits. Review of applications will begin October 15, 2009. The Search Committee will review applications until the position is filled. Applications, including a cover letter and curriculum vitae, should be sent to:

Department Head Search Committee
c/o Michele Kronau
Department of Mathematical Sciences
Rensselaer Polytechnic Institute
Troy, NY 12180-3590
Email: kronam@rpi.edu

Rensselaer Polytechnic Institute, an equal opportunity-affirmative action employer, particularly encourages applications from women and minority candidates.




Posted 09/22/09

Junior Scientist (Research Associate): Neurophysiology
University of Freiburg

Junior Scientist Position (Research Associate)
The Laboratory for Biomicrotechnology,
Dept. of Microsystems Engineering,
Faculty of Engineering
University of Freiburg, Freiburg

The Laboratory for Biomicrotechnology (Prof. Ulrich Egert) offers a junior scientist position (A13, up to 4 years) for a biologist with expertise on electrophysiology, cell culture of neuronal networks, neurophysiology in acute brain slices and/or Ca-imaging.

We are interested in the mechanisms and structures underlying the activity dynamics in neuronal networks and the processing of neuronal activity within the network. In joint projects with computational neuroscientists we investigate how the biological neuronal networks process incoming stimuli, what determines intrinsic activity, how pathological dynamics arise and how to contain them. To address these questions we use acute brain slices, cell cultures and animal models with a variety of techniques. A central technology is extracellular recording the neuronal activity with microelectrode arrays to analyze the spatio-temporal structure of activity. Recordings with these arrays are combined with paired intracellular recordings, calcium imaging, microstimulation and advanced data analyses. New technical and analysis tools are developed as needed in collaborations with microsystems engineers.

This work is embedded in the Bernstein Center for Computational Neuroscience Freiburg (BCCN Freiburg) and the new Bernstein Focus Neurotechnology - Freiburg/Tuebingen. The successful candidate is expected to contribute to the teaching and training program of these initiatives.

Candidates should have outstanding academic records and an interest in translational neuroscience and neurotechnology.

The position is open immediately until filled.

For further information, please contact Prof. Ulrich Egert (Head of laboratory) or Dr. Janina Kirsch (Coordinator for the Teaching & Training Programs).




Posted 09/22/09

Tenured/Tenure-track Position: Applied Mathematics
Brown University

Division of Applied Mathematics
Brown University
Position in Applied Mathematics

The Division of Applied Mathematics seeks applicants for a tenure-track or tenured open rank position. Areas of emphasis include scientific computing and systems biology. The starting date for the position is July 1, 2010. Postdoctoral experience as well as good communication and teaching skills are required. To apply for this position, please visit http://www.mathjobs.org and submit the relevant materials (AMS cover sheet, curriculum vitae, a concise description of research interests and goals, representative preprints and reprints, and at least 3 letters of recommendation for tenure-track applications or a list of 5 potential letter writers for applications for a tenured position) online.

Alternatively, applications can be sent to:
Attn: Faculty Search
Professor Paul Dupuis, Chairman
Division of Applied Mathematics
Brown University
PO BOX F
Providence, RI 02912, USA

To receive full consideration, complete applications should be received by November 7, 2009. Applications received after this date may still be considered at the discretion of the search committee.

Brown University is an affirmative-action/equal-opportunity employer. Women and minorities are encouraged to apply.




Posted 09/22/09

Tenure-track Position: Quantitative Sciences
University of Minnesota Rochester

The University of Minnesota Rochester (www.r.umn.edu) invites applications for an open-rank, tenure-track faculty position in the quantitative sciences for its degree program, the Bachelor of Science in Health Sciences (BSHS). This program will provide education and experiential learning for students interested in health professions career programs, graduate education, or professional degrees. The successful candidate will take leading course design and delivery responsibility for lower division mathematics (precalculus and calculus) and statistics, and one of the following upper division areas at the introductory level: biostatistics, bioinformatics, or health informatics.

Faculty will join the newly established Center for Learning Innovation (CLI). CLI leads the development of an integrated curriculum. It promotes a learner-centered, competency-based learning environment in which ongoing assessment guides and monitors student learning and is the basis for data-driven research on learning. Faculty take a team-based approach to teaching and research, and are responsible for the development of the curriculum, including learning objectives, development of learning objects, assessment, and mentoring of postdoctoral fellows. They are expected to significantly contribute to advancing the field of inquiry of student learning, especially as it pertains to understanding principles and concepts in the life, physical, and quantitative sciences and the humanities.

The successful candidate has a Ph.D. or equivalent in the quantitative sciences with a deep interest in science-based learning and has experience in the design of new curricula, assessment, and technology-enhanced education at the undergraduate level. The successful candidate works well in interdisciplinary teams, is comfortable working in an uncertain and unstructured environment, and exhibits creativity, innovation and entrepreneurship.

The University of Minnesota designated the University of Minnesota Rochester (UMR) as its fifth coordinate campus in December 2006. The campus currently serves approximately 400 students taking courses through partnerships with other campuses of the University of Minnesota. UMR admitted its first freshmen class in fall 2009 and is projected to grow its enrollment to 1,400 by 2012.

Review of applications will begin December 15, 2009 and will continue until the position is filled. Applications must be submitted online at https://employment.umn.edu. Search postings for Job Requisition #162736 for application instructions and links. In addition to the Faculty/Academic Application for Employment form, applicants must attach to the online application a description of teaching experience and philosophy, summary of research interests, curriculum vitae, and names and contact information (including e-mail addresses) for three references.

For more information, contact Andrea Wilson, University of Minnesota Rochester, 300 University Square, 111 S. Broadway, Rochester, MN 55904; fax 507-281-7794, phone 507-280-4650, e-mail wils1236@umn.edu.

The University of Minnesota is an Equal Opportunity Employer and Educator.

The University of Minnesota is committed to the policy that all persons shall have equal access to its programs, facilities, and employment without regard to race, color, creed, religion, national origin, sex, age, marital status, disability, public assistance status, veteran status or sexual orientation. To request disability accommodations and/or to receive materials available in alternative formats, please contact Andrea Wilson as noted above.




Posted 09/22/09

Postdoc: Spatial Modeling of Vegetation Dynamics
University of Guelph

Postdoctoral Position in Spatial Modeling of Vegetation Dynamics
Global Ecological Change Laboratory
School of Environmental Sciences, University of Guelph

Posted: September 15, 2009

Applications are invited for a 1-year PDF position (with possibility of renewal) in spatial modeling of vegetation dynamics. The candidate should have experience in computer programming (any platform) of spatial simulation models and an interest in vegetation ecology. The candidate will work with research group of Dr. Madhur Anand, Canada Research Chair in Global Ecological Change, and with one of several vegetation ecosystems under study by the group through collaborations (e.g., in Canada, Brazil).

Possible research questions include but are not limited to: What maintains biodiversity? What is the effect of species invasions? What are the implications of climate change? What is the role of spatial structure? What is the best way to restore an ecosystem?

Applications will be considered immediately and until the position is filled. Please send a CV with statement of suitability for the position and names of 2 potential referees to: Dr. Madhur Anand (mailto:manand@uoguelph.ca).




Posted 09/15/09

Assistant Professor: Quantitative Biology
Oakland University

Oakland University is seeking an outstanding researcher in Quantitative Biology, starting January 1, 2010. Applicants from a wide variety of disciplines are welcome, including bioinformatics, mathematical modeling, biostatistics, and bioengineering.

Applicants should possess a PhD in mathematics, biology, engineering, or a closely related field to the area of Quantitative Biology, and preferably additional postdoc experience. Teaching experience at the college level, or the potential to be an outstanding teacher, and extensive research experience in the area of Quantitative Biology is required. The faculty member will be hired into a department that best fits the background of the applicant, such as mathematics and statistics, biological sciences, or electrical& computer engineering. Candidates for this position must engage in interdisciplinary research that crosses department boundaries, and must use mathematical or numerical methods to solve important biomedical problems.

The applicant will initially focus on developing a world-class, externally funded research program. In the long term, the applicant should have the potential to become a researcher/educator who can help establish and lead a planned Quantitative Biology PhD program. The ideal candidate should fit well with several of the established strengths at Oakland University, and should be able to contribute to biomedical research at the new Oakland University William Beaumont School of Medicine.

Applicants should submit a curriculum vitae, a description of research interests, and arrange for three letters of reference to be sent to: Dr. Brad Roth, Quantitative Biology Search Committee, Dept. Physics, Oakland University, Rochester, MI 48309, or by email to roth@oakland.edu. To receive full consideration, applications should be received by October 15. Oakland University is an Equal Opportunity Employer. Women and Minorities are encouraged to apply.




Posted 09/15/09

Postdoc & Senior Research Positions: Computational Cell Biology
Systems Biology Ireland, UCD, Dublin.

Postdoctoral and senior research positions in COMPUTATIONAL CELL BIOLOGY Systems Biology Ireland, UCD, Dublin.

We seek outstanding candidates on junior and senior levels to work on computational modeling of signaling and gene networks in mammalian cells at Systems Biology Ireland, University College Dublin. Ongoing projects include the temporal and spatial dynamics of receptor tyrosine kinase signaling and transcriptional networks that govern cell proliferation, differentiation and motility (supported by a multi-PI grant to Profs. Boris Kholodenko, Walter Kolch and Zoltan Neufeld). The successful applicant will work closely with experimentalists at the interface between mathematics, engineering and biology in a multi disciplinary research community at Systems Biology Ireland. This presents a unique opportunity for creative individuals who want to work at the cutting-edge of systems biology.

You will be a part of an interdisciplinary team with national and international collaborations in the field of systems biology. The following skills and qualifications are required: 1) PhD in Biophysics, Chemical Engineering, Mathematics, or Biochemistry and evidence of practical work experience in the systems biology of signal transduction; 2) knowledge and experience of advanced mathematical modelling, including non-linear systems and non-linear dynamics, and 3) basic knowledge of cell/molecular biology. Understanding of probability theory and statistics is a plus. The complexity of the relevant problems requires at least a two years initial commitment.

Benefits and salary commensurate with experience. Individuals with an interest in Systems Biology are encouraged to apply.

Salary Scale: Euro 40,000 - 50,000; for experienced researcher up to Euro 76,000.

Informal enquiries are welcome, please send them to systemsbiology@ucd.ie. For formal applications, please visit our website http://www.ucd.ie/hr/jobvacancies/

Closing date: 23.30hrs on Wednesday, 14th October 2009

NOTE: Applications must be submitted by the closing date and time specified. UCD are unable to accept late applications Please note at this time UCD do not require assistance from Recruitment Agencies - Any CV's submitted by Recruitment Agencies will be returned. All current recruitment which is taking place within UCD is dependent on non-Exchequer, external and self-funding sources of finance. UCD is an equal opportunities employer




Posted 09/15/09

Postdoctoral Position in Theoretical and Computational Biology
University of Tennessee at Knoxville

A postdoctoral position in quantitative biology is immediately available in the Department of Physics and National Institute for Mathematical and Biological Synthesis at University of Tennessee at Knoxville. The successful candidate will develop and analyze predictive stochastic models for cell signaling networks that play a role in immunity and will interact with experimental collaborators.

The applicant is expected to meet several of the following criteria: (1) Ph.D. degree in computational biology, physical/mathematical sciences, or engineering, (2) Experience with computational simulation and analysis, (3) Solid background in at least one of statistical physics, nonlinear dynamics, and stochastic processes, and (4) Excellent collaboration and communication skills. However, a strong desire of understanding biological phenomena using quantitative methods values more than a particular set of skills.

The initial appointment will be for a period of one year and renewable upon mutual agreement. Applicants should directly send a cover letter with a possible starting date, CV, publication list, and names and contact information of three references to Prof. Jaewook Joo by email (stochasticdynamics at gmail dot com).




Posted 09/09/09

Tenure-track or Tenured Position
University of Maryland

The Computer Science Department at the University of Maryland, College Park, is searching for candidates to fill the Jack and Rita G. Minker Professorship. Candidates must have at least 3 years of experience, and the appointment will most likely be made at the assistant professor level (tenure track). Preference will be given to candidates working in new or innovative areas, including computational science and computational biology. The Minker Professor will hold a joint appointment between the Computer Science Department and the Institute for Advanced Computer Studies (UMIACS).

Applications received by October 15 will be given full consideration. Interviews will begin shortly after that date.

The department has a long history of excellence in numerical computation, and we want to see it continue.

Further information on the position and the application procedure can be found at:
http://www.cs.umd.edu/department/info-for-prospective/faculty.shtml




Posted 09/09/09

Tenured, Tenure-track, Visiting Positions
National University of Singapore

The Department of Mathematics at the National University of Singapore (NUS) invites applications for tenured, tenure-track and visiting (including post-doctoral) positions at all levels, beginning in August 2010.

[For details see http://ww1.math.nus.edu.sg/career.aspx - Ed.]

Enquires may also be sent to this email address. Review process will begin on 15 October, and will continue until positions are filled.

For further information about the department, please visit http://www.math.nus.edu.sg




Posted 09/09/09

CIERA Postdoctoral Fellowships
Northwestern University

NORTHWESTERN UNIVERSITY
CIERA - Center for Interdisciplinary Exploration and Research in Astrophysics
Department of Physics and Astronomy
Dearborn Observatory
2131 Tech Drive
Evanston, IL 60208-2900, USA
Tel: 847-491-8646

Postal Submissions: Attention: William Finney at address above
E-mail Submissions (Preferred): ciera@northwestern.edu
Application Deadline: 12/31/2009

The new Center for Interdisciplinary Exploration and Research in Astrophysics (CIERA) at Northwestern University invites applications for Center Postdoctoral Fellowships. Fellows will be expected to work independently and pursue an interdisciplinary research program in any area of astrophysics that potentially intersects with other fields such as computer science, applied math, planetary science, astrobiology, chemistry, or electrical engineering. In addition to astrophysicists we encourage applications from recent Ph.D. graduates in those other fields who are interested in switching to astrophysics and/or applying their knowledge from another field to astrophysical problems. More information about CIERA and its activities can be found at http://ciera.northwestern.edu. Fellowship appointments will be for a 3-year term (with the possibility of extension) starting in September 2010. The initial annual stipend is $60,000, plus a competitive benefits package, and a research budget of $15,000 per year.

Applicants should send a complete curriculum vitae including a list of publications, a brief statement of research accomplishments and future plans for interdisciplinary research in astrophysics, and arrange for at least 3 letters of recommendation to be sent to the above address. Email submissions are preferred. Please clearly state the title of the position for which you are applying in your cover letter and in the subject of your e-mail. Applicants must receive their Ph.D. prior to appointment. Applications from women and minority candidates are especially encouraged. The application deadline is December 31, 2009.




Posted 09/09/09

Postdoc: Modeling MS-based Proteomics & Clinical Apps
IUPUI

The Department of Mathematical Sciences at IUPUI invites applications for a postdoctoral position in Quantitative Methods in the Proteomics and Genomics Research Group at the IUPUI Signature Center for Mathematical Biosciences.

The Center provides a mechanism and an environment that fosters collaborative research activities across the mathematical sciences and the life and health sciences schools at Indiana University-Purdue University Indianapolis (IUPUI) specifically with the Indiana University School of Medicine (IUSOM). The postdoctoral fellow will join a collaborative effort to develop analytical and computational models of MS-based proteomics and their clinical applications.

Qualifications: Applicants should have a Ph.D. in mathematics/statistics, computer sciences, mathematical biology/physics, or a related area. A background in statistical/computational methods for proteomics and/or genomics and/or metabolic would be beneficial. Strong quantitative and computational skills, as well as excellent communication skills are required.

How to Apply: Applicants should send a letter of interest, curriculum vitae, brief statement on research and three letters of reference to: Dr. Ben Boukai at bboukai@math.iupui.edu. All applications will be considered until position is filled; the start date is negotiable. IUPUI is Indiana's urban research and academic health sciences campus, and the focal point of the Indiana Life Sciences Initiative. The Department, with a faculty of 45, offers programs of study leading to Purdue University B.S, M.S., and Ph.D. degrees in pure and applied mathematics, including an M.S. in Applied Statistics and a B.S. in Mathematics with Actuarial Science concentration. The Department also offers a Ph.D. degree in biostatistics in collaboration with the IU School of Medicine. Current areas of research strength in the Department include mathematical physics and integrable systems, dynamical systems, operator algebras and non-commutative geometry, differential geometry, mathematical neuroscience and biomathematics, scientific computing, and applied statistics.

IUPUI is an Equal Opportunity/Affirmative Action Institution. Additional information about IUPUI and the Department is available at www.iupui.edu and www.math.iupui.edu.




Posted 09/09/09

Postdoc: Modelling the Origins & Implications of Global Gene
Oxford

Post-Doctoral Researcher - Modelling the origins& implications of global gene expression variation

OXFORD CENTRE FOR INTEGRATIVE SYSTEMS BIOLOGY and Departments of Biochemistry, Physics and Weatherall Institute For Molecular Medicine

We are seeking to appoint a Post-Doctoral Researcher to investigate extrinsic noise in gene expression in mammalian cells and examine couplings to the cell cycle. The project aims to investigate the origins of the pronounced, global, variability observed between different cells in clonal populations and how variability might impact on other processes in both cell and organism. The PDRA will work with experimental data from the lab of Dr Francisco Iborra (Weatherall Institute of Molecular Medicine) and will develop theoretical treatments with Prof Bela Novak (Biochemistry) and Dr Nick Jones (Physics). The researcher will have a desk in the Jones lab but will have a principal base in the group of Prof Novak. This topic is approached by researchers in many fields so applications from across the disciplines will be considered. The appointment is of 2 years duration and would, desirably, start soon after a candidate is selected (though some flexibility is possible). Informal enquiries to nick.jones@physics.ox.ac.uk

Applicants should possess a PhD or equivalent (or be about to receive one) and should have the following necessary and desirable experience:-

Essential: A good level of familiarity with master equations, generating functions, SDEs and ODEs; a high level of programming skills; enthusiasm to work with real biological data and to work with researchers from different backgrounds; experience modelling real systems from data, preferably in Biology and a strong, relevant, publication record and an ability to work independently if required

Desirable: Experience dealing with the parameters of large systems of equations; biological modelling especially of gene expression noise and familiarity with methods to simulate stochastic chemical processes.

The post is funded by BBSRC& EPSRC for 2 years (in the first instance) and is graded on the University's grade 7 scale, for which the salary range is £28,839 - £35,469 per annum. The actual starting salary offered will be based on qualifications and relevant skills acquired and will also be determined by the funding available.

For further general information, an application cover sheet and other application requirements please visit the Departmental website http://www.bioch.ox.ac.uk/aspsite/index.asp?sectionid=vacancies&job=BR399-info or phone (01865) 613204, quoting the reference number below.

Applications, including 3 copies of the completed application cover sheet and recruitment monitoring form, three copies of a detailed CV, the names and addresses of two referees, (one of whom must be the current or most recent employer), and three copies of a letter setting out, with examples, how you meet the selection criteria for the post, should be sent to:

The Deputy Administrator
Department of Biochemistry
University of Oxford
South Parks Road
Oxford
OX1 3QU

Please quote reference number: BR/399/W

The closing date for applications is Friday, 25th September 2009




Posted 09/09/09

Postdoc Position: Mathematical Epidemiology
Johns Hopkins

Johns Hopkins Bloomberg School of Public Health and Naval Research Laboratory Mathematical Epidemiology

The Johns Hopkins Bloomberg School of Public Health (JHU) is seeking qualified candidates for a post-doctoral position in mathematical epidemiology beginning in the Fall/Winter of 2009. The position is to be jointly held with the Department of Epidemiology and Nonlinear System Dynamics Section (NSDS) at the Naval Research Laboratory (with Dr. Ira Schwartz). The position is envisioned to be multi-disciplinary. Work will include development of algorithms and mathematical methods based on nonlinear science concepts to solve a broad range of problems in the field of infectious disease dynamics and epidemiology. In addition to mathematical modeling, computer and programming skills (e.g. C, Matlab, R statistical package) are essential.

Candidates should send a CV and three letters of recommendation to: Dr. Derek Cummings, Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205 (phone: 410 502 9319, Email: dcumming@jhsph.edu. Position will be one year with option for extension to two years. Starting salary will be in the range $50,000 to $65,000 depending upon experience, plus benefits.

Johns Hopkins Bloomberg School of Public Health is an equal opportunity employer.

Candidates must be a US citizen or have permanent legal residency status.




Posted 09/09/09

Postdoc Position: Bayesian Statistics/Computational Biology
UCLA

A postdoctoral fellow position is available (flexible start-date) in Dr. Marc Suchard's research group across the Departments of Biomathematics, Biostatistics and Human Genetics, University of California, Los Angeles. We develop novel techniques in Bayesian statistics and applied probability to address questions in phylogenetic reconstruction and evolutionary medicine. Projects include simultaneous inference of alignment and phylogeny, phylogeography of viral epidemics and many-core (GPU) algorithm development for computational statistics.

We are looking for a candidate with a recent PhD who has training in statistics, applied mathematics or computational biology. Experience in biomedical data or molecular sequence analysis is desirable.

For consideration, please email a CV, bibliography, brief description of your experience and names of two potential references to: msuchard@ucla.edu




Posted 09/09/09

Research Jobs, September Update
NIH

NIH-Wide Recruitment for PIs

Get your cvs and research plans ready! The NIH Intramural Research Program will soon launch a first of its kind NIH-wide recruitment for Principal Investigators. This represents an unprecedented cooperation between all NIH Institutes and Centers (ICs) with intramural programs to recruit the best available biomedical researchers (laboratory-, clinic- or population-based). Formal advertisement will begin later in September with a closing date in November. We hope to attract a diverse group of highly qualified applicants, many of whom might not apply to ads focused on a particular area. This is an opportunity for job seekers to give us their best shot, rather than tailoring their research proposals to match an ad. Applications will be distributed to committees of NIH experts in various research areas. The top applications will be forwarded to the IC Scientific Directors and Chairs of standing search committees. The process is expected to culminate in a seminar series early next year, featuring the finalists. We expect to hire approximately 10 PIs, most of whom would be tenure-track.

See Dr. Gottesman's commentary in the latest NIH Catalyst:
http://www.nih.gov/catalyst/.

Tenured or Tenure-Track
Basic Biomedical Research, NHLBI
(deadline: November 1)

The Division of Intramural Research (DIR) of the National Heart, Lung and Blood Institute (NHLBI) is seeking an outstanding scientist to initiate and direct an independent research program in basic science on the NIH campus in Bethesda, MD. The area of expertise of the candidate is less important than his/her demonstrated ability to conduct outstanding independent research in areas within the broad biomedical research interests of the DIR. The areas of expertise may include but are not limited to: cell biology, developmental biology, molecular biology, immunology, stem cell biology, genetics, genomics, physiology, biochemistry, bioenergetics and metabolic regulation, biophysics, biomolecular structure and dynamics, systems and synthetic biology, and biomedical engineering. Technical approaches may include: high-resolution microscopy, x-ray spectroscopy and imaging, clinical robotics, nanotechnology, chemical biology, computational, and theoretical methods. The existing faculty is an outstanding group of internationally recognized biomedical researchers covering a wide range of basic and clinical research topics (please see http://dir.nhlbi.nih.gov/) complemented by the other research institutes within the DIR (please see http://www.nih.gov/science/#campus).

The DIR environment provides the opportunity to perform creative and innovative science unconstrained by traditional support systems available at academic or private research institutions. This is enhanced by outstanding research core facilities in optical and electron microscopy, transgenic and knockout mouse production, mouse phenotyping, proteomics, genomics, and flow cytometry/cell sorting as well as world-class seminar series and symposia. DIR faculty can participate in Graduate Partnerships Programs (http://gpp.nih.gov) with many academic programs around the world as a means of recruiting graduate students, and extensive career guidance and development resources are available on campus for post-doctoral trainees.

Candidates must have an M.D., Ph.D., or both and have an outstanding record of research accomplishments as evidenced by publications in major peer-reviewed journals. The position can be filled as a tenure-track or tenured position, but preference will be given to senior post-doctoral fellows or faculty who are still in the early stages of their research careers. The successful candidate will be offered a competitive salary commensurate with experience and qualifications, and will be assigned ample research space, supported positions, and an operating budget. Appointees may be US citizens, resident aliens, or non-resident aliens with or eligible to obtain a valid employment authorized visa. Complete applications must be received by November 1, 2009. Please submit a curriculum vitae, brief (not to exceed 3 pages) statement of research interests and three letters of reference in .pdf or MS word format only (no paper applications will be accepted) to: Robert S. Balaban, Ph.D., Scientific Director, NHLBI; c/o Michelle Renehan, nhlbi_dir_search@mail.nih.gov. DHHS and NIH are Equal Opportunity Employers. Application from women, minorities and persons with disabilities are encouraged.

Link to Fellowships, Staff Scientist and Tenured/Tenure-Track
Research Positions
http://www.training.nih.gov/

Link to NIH Jobs
http://www.jobs.nih.gov/

Searchable database of all NIH intramural research projects
http://intramural.nih.gov/search/index.tml




Posted 09/09/09

Tenure-track Positions: Bioinformatics / Systems Biology
University of Arizona

The Department of Molecular and Cellular Biology (www.mcb.arizona.edu) as part of a new initiative in Systems Biology is seeking to hire 2 tenure-track Assistant Professors with expertise in Bioinformatics or Systems Biology for appointment in 2010. Successful candidates can become members of the interdisciplinary Bio5 institute (www.bio5.arizona.edu) and/or the Arizona Cancer Center and may apply for a joint appointment in Mathematics, Computer Sciences, Electrical and Computer Engineering, Physics, or other relevant departments. The appointed individuals will be expected to establish independent and collaborative research programs and contribute to undergraduate, graduate and/or medical education. Opportunities for interaction and collaboration are particularly strong in the areas of functional genomics, genetics, DNA repair, and cancer research.

To apply, submit an on-line faculty application for job number 43211 at www.uacareertrack.com. Applicants should be prepared to attach a curriculum vitae and a 1-2 page statement of research and teaching interests at the time of application. Separately, have at least three supporting letters sent via email to dslay@email.arizona.edu. To ensure consideration, complete applications should be received by September 15, 2009, although applications will be accepted until the positions are filled.

The University of Arizona is an EEO/AA Employer/M/W/D/V and is seeking individuals who are able to work with diverse students and colleagues and who have experience with a variety of teaching methods and curricular perspectives.




Posted 09/09/09

CNRS-MPG Postdoc Programme
Centre National de la Recherche Scientifique

The CNRS-MPG Post-Doctoral Programme for Systems Biology was founded by the Max-Planck-Gesellschaft and the Centre National de la Recherche Scientifique, with the common goal to increase cooperation in this new field of investigation and to encourage the mobility of young scientists engaged in the pursuit of excellence.

MPG and CNRS invite applications from outstanding young scientists who are engaged or wish to engage in research in Systems Biology. Successful applicants will have demonstrated their ability to perform excellent research. They will be expected to run their personal research project, thus laying the foundations for a successful career in science. They will be offered a high-quality post-doctoral position with an initial 2-year contract and a possible 1-year extension. In addition they will receive 20 k¤ p.a. for material resources and travel expenses

Applications should include a CV, a list of publications, copies of two publications, two letters of reference, a one-page summary of scientific achievements, a two-page research plan, and their choice of two host institutions. One of these institutions should be chosen from the MPG list, and the other from the CNRS list. One of these two institutions should be marked as "main host facility". Scientists of any nationality are welcome to apply, although German applicants are expected to designate a French main host, and vice-versa. Geographic mobility is a requirement.

A detailed description of the programme and application instructions are found on the following web site http://www.mpi-magdeburg.mpg.de/CNRS_MPG

The deadline for application is 30 September 2009. Suitable candidates are invited to apply to both, the MPG Division for International Relations, and the CNRS Office of European Affairs.<Michaela.Zimmermann@gv.mpg.de, Anne-Marie.Brass@cnrs-dir.fr>




Posted 09/09/09

Postdoc Position
University of New Mexico

Postdoctoral Position available immediately at the University of New Mexico Center for Spatiotemporal Modeling. This NIH-funded National Systems Biology center focuses on quantitative use of biochemical, fluorescence and electron microscopy approaches to build large data sets for mathematical modeling of cell signaling processes. Laboratory has state-of-the-art equipment for live cell imaging, single particle tracking, FRET/FRAP, TIRF and ratio imaging of intracellular calcium. The postdoctoral associate will focus on spatio-temporal aspects of calcium regulation in immune cells.

The ideal candidate will have familiarity with ion channel experimentation methods and/or have experience in mathematical models of ion transport. The interdisciplinary group is located on UNM Medical School campus and interacts with computational groups at nearby national laboratories. The state of New Mexico is famous for beautiful blue skies and mild weather. Outdoor enthusiasts enjoy skiing and hiking.

Send CV to bwilson@salud.unm.edu.




Posted 09/01/09

Faculty positions
Purdue University

PURDUE UNIVERSITY
Department of Computer Science
Faculty Positions in High-Performance Computing

The Department of Computer Science at Purdue University invites applications for tenure track faculty positions in the area of computational science and engineering, and high-performance computing and systems, beginning August 2010. We are looking for candidates with a demonstrable research record in these areas and a commitment to multidisciplinary research. Up to three positions at the Assistant Professor rank are available. A joint appointment with another department within the College of Science or the College of Engineering is likely for candidates with interdisciplinary research interests.

Purdue faculty have had a pioneering role in computational science and engineering research and education, and are currently involved in several large-scale computing projects: e.g., the CSCAPES Institute funded by the Department of Energy, and the PRISM project funded by the National Nuclear Safety Administration. The Computing Research Institute facilitates collaborations in high-performance computing by bringing computational scientists and domain scientists together. Interdisciplinary graduate programs in Computational Science and Engineering, and Computational Life Sciences help train graduate students across departmental boundaries.

The Department of Computer Science offers a stimulating and nurturing academic environment. Forty-four faculty members direct research programs in areas including bioinformatics, computational science and engineering, databases, machine learning, networking, programming languages, security, software engineering, systems, theory, and visualization. The department has implemented a strategic plan for future growth and has recently moved into the Lawson building. Further information about the department is available at http://www.cs.purdue.edu.

All applicants should hold a PhD in computer science or a closely related discipline, be committed to excellence in teaching, and have demonstrated potential for excellence in research. Salary and benefits are highly competitive. Applicants should apply online at https://hiring.science.purdue.edu.

Review of applications will begin on October 1, 2009, and will continue until the positions are filled. Purdue University is an Equal Opportunity/Equal Access/Affirmative Action employer fully committed to achieving a diverse workforce.




Posted 08/27/09

Tenure-track Position: Mathematical Biology
Purdue University

The Departments of Mathematics and Biological Sciences in the College of Science, Purdue University, invite applicants for a joint tenure-track faculty position in mathematical biology in the area of dynamical systems. The primary department of appointment will be the Department of Mathematics. Potential areas of research interests include:

Applicants must have a Ph.D. or equivalent in an appropriate discipline and some postdoctoral experience. The appointment will be made at the assistant or associate professor level. The successful applicant is expected to conduct research in mathematical biology to address fundamental questions in the areas listed above, teach undergraduate and/or graduate students, and participate in ongoing programs in the both departments.

Applications should be submitted online through http://www.mathjobs.org and should include:

Direct all inquiries to goeke@math.purdue.edu. Screening of applications will begin November 15, 2009 and will continue until the position is filled.

Purdue University in an Equal Opportunity/Equal Access/Affirmative Action employer.




Posted 08/27/09

Postdoc Position: Computational Biology
University of Washington

A postdoctoral fellow position in computational biology is anticipated to open in the fall of 2009 at University of Washington, Seattle, WA. The candidate will join a multi-disciplinary group working on edge-cutting research problems in computational biology.

Job Description:
We seek a highly motivated and diligent researcher at the early stage of academic career with the ability to carry out research projects independently. The position will focus on biomarker discovery for chronic myeloid leukemia (CML) by integrating gene expression data, resources from the literature and network analysis. The successful candidate will mainly work with Dr. Ka Yee Yeung, Ph.D. in computational biology, at University of Washington and Dr. Vivian Oehler, M.D. in hematology, at the Fred Hutchinson Cancer Research Center. The candidate will also be part of a multi-disciplinary team consisting of Dr. Roger Bumgarner in the Department of Microbiology and Dr. Adrian Raftery in the Department of Statistics. The candidate will be expected to participate in data analysis, algorithm and software development, to work cooperatively with collaborators, to actively publish and present results, and other duties as required. The applicant must have a Ph.D. in biostatistics, statistics, computer science, computational biology or any physical sciences with a strong background in mathematics and computing. The applicant is also expected to demonstrate excellent programming skills to solve complex research problems.

Location:
Seattle, WA in the Pacific Northwest is widely considered to be one of the top US cities for young professionals. Seattle offers residents a mild climate, a multitude of cultural activities, several professional sports teams, superb cuisine and outdoor activities including cycling, hiking, skiing, snowboarding, boating etc.

Application:
Interested candidates should send the following materials to Dr. Ka Yee Yeung (kayee@u.washington.edu):

The review of applications will begin immediately and will continue until the position is filled. Under-represented minorities are especially encouraged to apply.




Posted 08/27/09

Postdoc: Multi-scale modeling in Immunology
University of Michigan

POSTDOC: Multi-scale modeling in Immunology, University of Michigan

We are immediately seeking outstanding candidates to work on computational modeling of the immune response at multiple spatial scales. The postdoctoral fellow would be co-mentored by Denise Kirschner and Jennifer Linderman at the University of Michigan. The project is part of a grant to use multi-scale and multi-system approaches to understand tuberculosis and involves integrating animal data and in silico models.

An estimated one-third of the human population is infected with the pathogen Mycobacterium tuberculosis (Mtb). Granulomas are self-organizing collections of immune cells that form in the lungs after inhalation of Mtb; they both contain the infection and provide a niche for bacterial survival. Understanding granuloma formation and maintenance thus provides a key to identifying as well as manipulating factors that lead to different outcomes following infection. Overall, this project involves both experimental work and mathematical/computational modeling to understand how tumor necrosis factor and other factors influence granuloma formation and maintenance.

The post-doctoral fellow will concentrate on integrating the big picture biology processes and computational modeling aspects of the project. Thus the ideal applicant will have experience in modeling with a strong interest, and some experience in, immunology and the study of pathogens. Good communication skills are essential. Pay is determined by the standard NIH post-doc pay schedule.

Applicants should send a CV, names of 3 references, and a letter describing research interests and summarizing Ph.D. work to Denise Kirschner (kirschne@umich.edu) Copies of published papers are welcome.




Posted 08/24/09

ASSISTANT PROFESSOR POSITION in SCIENTIFIC COMPUTING
Uppsala University, Sweden

Uppsala University, Sweden invites applications for an ASSISTANT PROFESSOR POSITION in SCIENTIFIC COMPUTING at UPPSALA UNIVERSITY, focusing on parallel software and algorithms for computational science and engineering on computer systems with multicore processors. The position is tenure track with a majority of time allocated to research.

Uppsala University has recently been awarded several grants for long-term research efforts in multicore-related research and is expanding in several directions (see www.it.uu.se for other openings). Currently, there is an open position as Assistant Professor in Scientific Computing, focusing on parallel software and algorithms for computational science and engineering on computer systems with multicore processors. The successful candidate will be able to teach both undergraduate and graduate courses, and conduct independent research. Initially, the appointment includes about 75 percent time for research. Priority is given to applicants who have completed their PhD at most five years before the application deadline.

The position provides excellent opportunities for interaction with existing research efforts at the department, including, e.g., development, analysis and computer implementation of parallel computational methods in science and engineering. This method-oriented research is performed in close collaboration with experts on applications in, e.g., fluid flow, materials science, molecular biology/genetics, financial mathematics, and acoustics. The Division of Scientific Computing is a partner in UPPMAX, Uppsala University's center for infrastructure and cooperation in computational science and engineering. More information is available at http://www.it.uu.se/research/ and http://www.it.uu.se/research/upmarc.

Application Deadline: September 18. Women are especially encouraged to apply. More information on the application procedure can be found at http://www.personalavd.uu.se/ledigaplatser/1837bitrlekt_eng.html




Posted 08/20/09

Postdoctoral Positions: Computational Cell Biology
UCD, Dublin

We seek outstanding candidates to work on computational modeling of signaling and gene networks in mammalian cells at Systems Biology Ireland, University College Dublin. Ongoing projects include the temporal and spatial dynamics of receptor tyrosine kinase signaling and transcriptional networks that govern cell proliferation, differentiation and motility (supported by a multi-PI grant to Profs. Boris Kholodenko, Walter Kolch and Zoltan Neufeld). The successful applicant will work closely with experimentalists at the interface between mathematics, engineering and biology in a multi disciplinary research community at Systems Biology Ireland. This presents a unique opportunity for creative individuals who want to work at the cutting-edge of systems biology.

You will be a part of an interdisciplinary team with national and international collaborations in the field of systems biology. The following skills and qualifications are required: 1) PhD in Biophysics, Chemical Engineering, Mathematics, or Biochemistry and evidence of practical work experience in the systems biology of signal transduction; 2) knowledge and experience of advanced mathematical modelling, including non-linear systems and non-linear dynamics, and 3) basic knowledge of cell/molecular biology. Understanding of probability theory and statistics is a plus. The complexity of the relevant problems requires at least a two year initial commitment.

Benefits and salary commensurate with experience. Individuals with an interest in Systems Biology are encouraged to apply.

For further details or to apply on line: http://www.ucd.ie/hr/jobvacancies/ Informal enquiries are welcome, please send them to systemsbiology@ucd.ie.

Salary: circa Euro 45,000 per annum
NOTE: Applications must be submitted by the closing date and time specified.

UCD are unable to accept late applications / agency applications. Such applications will be returned.

Closing date: 23.30hrs on Friday 28th August 2009

Please note: All current recruitment which is taking place within UCD is dependent on non-Exchequer, external and self-funding sources of finance.

UCD is an equal opportunities employer




Posted 08/20/09

Postdoc: Cross-scale Theory for Viral Emergence
UCLA

We invite applications for a postdoctoral research fellowship to develop novel evolutionary theory for the emergence of viral pathogens across species boundaries. The post is linked to an NSF-funded project addressing the joint dynamics of viral invasion and adaptation subject to multiple scales of selection (i.e. replication within hosts and transmission between hosts). The project will build a theoretical framework based on population genetics, population dynamics, metapopulation ecology, and epidemiology, and will work with leading empirical groups to link the theory to field and experimental data. The position will be based in the lab of Jamie Lloyd-Smith (UCLA) and will collaborate closely with John Novembre (UCLA) and Sebastian Schreiber (UC Davis).

We are looking for an enthusiastic and motivated individual to join our research team. The ideal candidate will have a PhD in a quantitative field, with previous experience in stochastic modeling of population genetics or population dynamics. Strong quantitative skills are essential, and good written and oral communication skills are highly desirable.

UCLA has vibrant communities of researchers working on evolutionary theory, population dynamics, and infectious diseases, and our groups have close ties with the School of Public Health and School of Medicine. The university is situated in a prime location in Los Angeles, within minutes of mountains, beaches, and the rich cultural and culinary offerings of the city.

The position is available as early as September 2009, and can last up to three years. Starting salary will be in the range of $47,000 to $53,000 per year (depending on experience), plus benefits. UCLA is an equal opportunity employer.

Inquiries and formal applications (CV, 1-2 page statement of research interests, 2 publications, and names of 3 references) can be submitted to James Lloyd-Smith<jlloydsmith@ucla.edu>. Review of applications will begin on August 24 and will continue until the position is filled.




Posted 08/17/09

Junior Professor in Computer Graphics and Visualization
Ruprecht-Karls University of Heidelberg

In the framework of the German Excellence Initiative, the Ruprecht-Karls- University of Heidelberg invites applications for a Junior Professor (f/m) in Computer Graphics and Visualization.

The position will be associated with the Faculty for Mathematics and Computer Science. It is an integral part of the "Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences" (MathComp.uni-hd.de) and will play an important role in the future development of the Interdisciplinary Center for Scientific Computing (IWR). Importantly, it will also be at the heart of a future Collaborative Research Center / Sonderforschungsbereich that the IWR currently applies for.

The successful applicant will be entirely independent. Possible research directions include computer graphics, navigation in and visualization of very large data sets from experiment or simulation, extraction and abstract representation of information, visualization of multimodal data with high resolution in space, time and wavelength.

We expect applications from outstanding individuals at the outset of their scientific career. Apart from research in computational algorithms or novel hardware implementations, the successful candidate is expected to collaborate closely with surrounding groups in scientific computing, image processing, microscopy and biology, and is invited to explore new application areas in the graduate school, in particular in the humanities and the cultural sciences.

The University generally encourages the application of female scientists, and would be particularly glad to fill this position with an outstanding female scientist. Handicapped persons with equivalent qualifications will be given preference.

Applications (hardcopy and electronic) including CV, list of publication and a detailed research statement that emphasizes possible local collaborations should be sent to the Dean of the Faculty of Mathematics and Computer Science, Prof. R. Weissauer, Im Neuenheimer Feld 288, D-69120 Heidelberg by October 12, 2009. The application procedure will remain open until the position is filled.

Please send copies, applications cannot be returned.




Posted 08/12/09

Postdoc Positions: Modeling & Phylogenetics
University of Michigan & University of Georgia

POSTDOCTORAL RESEARCH ASSOCIATES
Department of Ecology & Evolutionary Biology and the Center for the Study of Complex Systems, University of Michigan, USA and Odum School of Ecology, University of Georgia

Applications are invited for two postdoctoral research fellowships in epidemiological and ecological modeling and phylogenetics of Avian Influenza Viruses. These posts are part of a long-term collaborative project between Dr Pej Rohani (University of Michigan) and Drs. Drake and Stallknecht (University of Georgia). One postdoctoral position is NSF-funded and will focus on the development of mathematical and computational models relating to the persistence, transmission dynamics and evolution of Avian Influenza Viruses within North American wild bird populations. This position will be primarily supervised by Dr Pej Rohani and the candidate will be based at the University of Michigan. The second position, funded by the James S. McDonnell Foundation will focus on the phylodynamics of Avian Influenza Viruses. This position will be primarily supervised by Dr John Drake at the University of Georgia.

The ideal candidates would have a PhD in a highly quantitative field, with previous experience in the analysis of ecological or epidemiological systems.

The positions are potentially for 3 years, with a salary in the range of $37,000-45,000 per year (depending on experience), plus fringe benefits.

For further information about the University of Michigan project, contact Pej Rohani (rohani@umich.edu). For further information about the University of Georgia project, contact John Drake (jdrake@uga.edu). Applicants should send a detailed CV, together with a brief statement of research interests and three references.

Review of applications will start on October 1 and will continue until the posts have been filled.




Posted 08/12/09

Postdoc Positions
Leiden University

Two Postdoc positions (2 years each) at Leiden University (Netherlands).

The Postdocs will take part in a large collaborative project (BetNet), funded by the Dutch Science Foundation. Participating institutes: see below, and the Groningen Biomolecular Sciences and Biotechnology Institute (GBB, University of Groningen). The project is aimed at resolving the dynamics of gene regulation networks, by using the quantitative demands on the shape of bacterial bet-hedging strategy distributions that are imposed by fluctuating selection environments. As a model system, we study the adaptation of the distribution of sporulation-initiation timing in B.subtilis to randomly changing environments and cue reliability.

Subproject:
Evolutionary Modeling; at the Institute of Environmental Sciences (CML). This subproject focuses on modeling state-dependent bacterial population dynamics and examining which bet-hedging strategies are evolutionarily stable in different selection regimes. Models will include size-, age-, and sporulation state dependence, as well as environmental information such as cue reliability.

Requirements:
PhD degree in Mathematics, Physics or Mathematical Biology, with a specialization in modeling empirical systems.

Subproject:
Bioinformatics; at the Mathematical Institute (MI) and the Leiden institute of Advanced Computer Science (LIACS). This subproject focuses on mathematical modeling, simulation and parameter identification of the relevant gene regulation network. The project aims at developing models that properly capture the stochastic effects of signaling and gene regulatory networks. Simulations will be using stochastic simulation algorithms (SSA). Parameter identification will involve niching genetic algorithms for SSA search landscapes.

Requirements:
PhD degree in Mathematics, Computer Science or Computational Biology, with a specialization in stochastic modeling and simulation or genetic algorithms.

Applications: send a CV + accompanying letter stating the subproject to Patsy Haccou: haccou@math.leidenuniv.nl (Can also be contacted for further information or a complete project description). Application deadline: 15 September 2009.




Posted 08/12/09

Postdoctoral Positions in Biophysical Modeling
CCAM

The Wolgemuth lab at the Center for Cell Analysis and Modeling (CCAM) at the University of Connecticut Health Center is looking to fill one or two postdoctoral positions in biophysical modeling of cellular motility. These positions will use analytic and computational methods to explore the biophysics of single cell motility and the collective migration of cells in tissues, both of which are relevant and/or directly applicable to processes such as wound healing, cancer metastasis, and development. In addition, there are experimental projects in the Wolgemuth lab that will complement these theoretical investigations.

CCAM is a unique interdisciplinary group that brings together cell biologists, biophysicists, biochemists, optical physicists, mathematicians, and computer scientists. These postdocs will interact with the modeling laboratory in CCAM, a small group of mathematicians and physicists immersed in an experimental biology setting, which fosters collaborative efforts integrating cell biology and physical modeling. The positions are available pending final approval of NSF funding and involve physics-based modeling which emphasizes the solid mechanics, fluid mechanics, and statistical mechanics of eukaryotic cell motility. Candidates should have a strong background in one or more of the following areas: theoretical physics/chemistry, computational physics, and applied mathematics.

For more information or to apply, contact:

The University of Connecticut Health Center is an Equal Opportunity Employer (M/F/V/PwD)




Posted 08/04/09

Adjunct Instructor: Biostatistics
St. Louis College of Pharmacy

St. Louis College of Pharmacy is seeking qualified applicants for an adjunct instructor in Biostatistics to teach related labs in the Fall Semester starting in August 2009.

Responsibilities:
Provide dynamic and effective teaching of major concepts introduced in biostatistics and literature review lectures including basic parametric and non-parametric statistics. Applications of statistical methods to decision-making in clinical pharmacy and the pharmaceutical sciences are stressed. Likely workload to be three lab/discussion sections. Class size around 25-30 students.

Be available for contact by students at arranged times out of class proportionate to the number of students taught. Prepare, administer and grade assignments for course.

Communicate regularly with full-time faculty responsible for math at the college. Follow STLCOP teaching and faculty guidelines for adjunct faculty.

Education and Requirements:
Qualified candidates will possess a Bachelor's degree in Biostatistics or other scientific field with significant statistical applications, at least 1 year of teaching experience and a strong desire to work with students. Masters in Clinical Pharmacy or related field preferred. Compensation by number of sections taught and commensurate with degree and experience.

Application Instructions:
Qualified candidates should submit a letter of application, curriculum vitae, names and contact information of two references to Dr. Margaret Weck, Director, Division of Basic and Pharmaceutical Sciences, St. Louis College of Pharmacy, 4588 Parkview Place, St. Louis, MO 63110. Electronic applications are encouraged and may be sent to jmullins@stlcop.edu. Review of applications will begin immediately and continue until the position is filled. EOE.




Posted 08/04/09

Postdoctoral Fellows
Mathematical Biosciences Institute

The Mathematical Biosciences Institute (MBI) is accepting applications for Postdoctoral Fellows to start September 2010.

Postdoctoral Fellows are immersed in the topics of the MBI emphasis year programs (see http://mbi.osu.edu). The MBI Postdoctoral Fellows engage in a three-year integrated program of tutorials, working seminars or journal clubs, and workshops, and in interactions with their mathematical and bioscience mentors. These activities are geared toward providing the tools to pursue an independent research program with an emphasis on collaborative research in the mathematical biosciences. MBI facilitated activities for Postdoctoral Fellows are tailored to the needs of each young scientist.

Applications for an MBI Postdoctoral Fellowship should be submitted online at http://www.mathjobs.org. Applicants should provide a curriculum vita and a research statement, and arrange for three letters of recommendation. For additional information please contact Rebecca Martin (rebecca@mbi.osu.edu or 614-292-3648). Applications completed before December 16, 2009 will receive full consideration. The Mathematical Biosciences Institute (MBI) is accepting applications for Postdoctoral Fellows to start September 2010.

Postdoctoral Fellows are immersed in the topics of the MBI emphasis year programs (see http://mbi.osu.edu). The MBI Postdoctoral Fellows engage in a three-year integrated program of tutorials, working seminars or journal clubs, and workshops, and in interactions with their mathematical and bioscience mentors. These activities are geared toward providing the tools to pursue an independent research program with an emphasis on collaborative research in the mathematical biosciences. MBI facilitated activities for Postdoctoral Fellows are tailored to the needs of each young scientist.

Applications for an MBI Postdoctoral Fellowship should be submitted online at http://www.mathjobs.org. Applicants should provide a curriculum vita and a research statement, and arrange for three letters of recommendation. For additional information please contact Rebecca Martin (rebecca@mbi.osu.edu or 614-292-3648). Applications completed before December 16, 2009 will receive full consideration.




Posted 08/04/09

Postdoc: Environment Department
Edmund Mach Foundation

The research carried out at the Environment Department of Edmund Mach Foundation encompasses both ecological and molecular studies. It focuses on the functional integrity and biodiversity of aquatic (mainly plankton, diatoms and salmonid fishes) and land taxa (mainly vertebrate fauna and their parasites, higher plants including annual species and forest trees) that are subject to anthropic pressure and global climate changes. The ACE-SAP (Alpine Ecosystems in a Changing Environment: Biodiversity Sensitivity and Adaptive Potential) Major Proposal is a collaborative project funded by the Autonomous Province of Trento involving three regional institutions (Edmund Mach Foundation, Natural History Museum of Trento, Civic Museum of Rovereto) and one external partner (University of Davis, California).

Description:
We are seeking a highly motivated and independent individual to carry out a research project on the Data management and analysis; application of statistical methods to the solutions of eco-epidemiological problems; use of advance statistical software packages and development of specific procedure in compatible programming languages; model building, analysis and interpretation, parameter estimation, sensitivity analysis and simulations of different scenarios; drafting scientific papers and reports; attending national and international conferences and workshops.

IT knowledge:
Statistical packages (e.g. R, S-Plus, GenStat); Mathematical software (e.g. Mathematical, Matlab, Maple); Programming languages (e.g. C, Fortran).

More information and application:
http://www.fondazioneedmundmach.it/sperimentazione_context2.jsp?ID_LINK=3419&area=6

Re-open announcement - Deadline for application:
31st August 2009




Posted 08/04/09

Two Postdoc Fellowships
David Geffen School of Medicine, UCLA

We invite applications for two 3-year postdoctoral positions to join Professor Blower's research group in the Semel Institute at the David Geffen School of Medicine at UCLA. The positions are in Infectious Disease Modeling with particular emphasis on modeling the computational, mathematical and statistical aspects of the evolution and transmission of drug-resistant HIV in resource-rich and resource-constrained countries. Support is through two recently funded NIH grants.

Applicants must have a doctorate in Applied Mathematics, Biostatistics, Biomathematics, Theoretical Biology or a closely related field. Please visit:
http://www.semel.ucla.edu/biomedicalmodeling/

for more information about our research group, where we work (Los Angeles, where you can't beat the weather, movie openings and beaches) and pdfs of our recent publications.

If you are interested in either of these positions please contact Professor Sally Blower at sally.blower@gmail.com




Posted 08/04/09

Postdoc: Mathematical Modelling of Photorespiration
University of Rostock, Germany

Postdoctoral Position: Mathematical Modelling of Photorespiration

A postdoctoral position is available in the Systems Biology Research Group at the University of Rostock, Germany (Olaf Wolkenhauer, www.sbi.uni-rostock.de).

Photorespiration represents one of the major elements in plant primary metabolism, constituting the second-most important process in the land-based biosphere. In light of the importance of this process a DFG funded research network PROMICS is to take a systems biology approach to understand the dynamics of photorespiration. The DFG research unit involves three groups from the University of Rostock (H.Bauwe, M.Hagemann) and six other leading experimentalists from Institutes across Germany. Applicants should have a strong background in mathematical and computational modeling and motivation to carry out an interdisciplinary project with experimental groups. Individuals with backgrounds in metabolic network reconstruction or metabolic engineering are especially encouraged to apply. Excellent communication skills are required for the candidate to lead the modeling activity within PROMICS.

The project is funded for an initial period of three years, with a possible extension for three more years. The salary is according to the German University payment scheme (E14) for an experienced postdoc (equivalent to a research group leader).

The Wolkenhauer Group (www.sbi.uni-rostock.de) provides a vibrant research environment, with a number of active research projects in the areas of bioinformatics and systems biology. The group moved in July 2009 into a new building and provides excellent facilities. The University of Rostock (founded in 1419) is one of the oldest in Europe and the north-east of Germany is one of the most attractive tourist regions of Germany.

Interested candidates should send their CV and documents in pdf format to:
olaf.wolkenhauer@uni-rostock.de.




Posted 07/28/09

Postdoctoral Researchers
Systems Biology Ireland, UCD

Postdoctoral Researchers
UCD Conway Institute
Systems Biology Ireland

Closing Date: 28th August 2009
Ref: 003858
Post Duration: Temporary, 4 years

Applications are invited from outstanding candidates to work on computational modelling of signalling and gene networks in mammalian cells at Systems Biology Ireland, University College Dublin. Ongoing projects include the temporal and spatial dynamics of receptor tyrosine kinase signalling and transcriptional networks that govern cell proliferation, differentiation and motility (supported by a multi-PI grant to Professors Boris Kholodenko, Walter Kolch and Zoltan Neufeld). The successful applicant will work closely with experimentalists at the interface between mathematics, engineering and biology in a multi disciplinary research community at Systems Biology Ireland. This presents a unique opportunity for creative individuals who want to work at the cutting-edge of systems biology.

Individuals with an interest in Systems Biology are encouraged to apply.

Salary: Euro 46,300 per annum

NOTE: Applications must be submitted by the closing date and time specified.

UCD are unable to accept late applications / agency applications. Such applications will be returned.

Closing date: 23.30hrs on Friday 28th August 2009

Please note: All current recruitment which is taking place within UCD is dependent on non-Exchequer, external and self-funding sources of finance.

For further details, or to make an application, please visit our website www.ucd.ie/hr/jobvacancies

UCD is an equal opportunities employer




Posted 07/28/09

Postdoc: BCI signal processing
Rudolf Magnus Institute, Utrecht

Postdoc in BCI signal processing

The Rudolf Magnus Institute in Utrecht, The Netherlands is looking for a highly motivated postdoc interested in neural signal processing for Brain Computer Interfacing.

The Utrecht BCI group, led by Prof. dr. Nick Ramsey, is part of the Department of Neurology and Neurosurgery at the University Medical Center Utrecht and participates in the nationwide BrainGain Consortium, which is devoted to application of Brain Computer Interfaces for patients and healthy individuals. The main focus of the group is conducting neuroscience research towards an invasive BCI application for paralyzed patients. We perform experiments with both healthy subjects and patients (~10 patients with electrode implants available for research each year). Available techniques: 128-channel EEG systems for extracranial and intracranial (ECoG) recordings, fMRI (1.5, 3 and 7 T human Philips systems), TMS and 64-channel intraoperative recordings in awake neurosurgery. Our highly interdisciplinary group consists of 4 postdocs, 10 PhD students and 6 master students, who have a background in neuroscience, psychology, biology or physics and their own expertise in the research field.

The postdoc is expected to investigate new ECoG signal processing techniques for BCI purposes, as well as for cognitive neuroscience research. He/she will work in close collaboration with neuroscientists and needs to have excellent communication skills.

The candidate is likely to have a PhD in biomedical engineering, computational neuroscience, electrical engineering or physics, with a record of publications. Solid experience in signal processing of any kind and excellent programming skills in Matlab are required. Experience in neuroscience is not a prerequisite, but we expect the candidate to acquire knowledge of underlying psychological and biological processes.

Earliest starting date of the two-year position is July 1st, 2009. Application deadline is September 1st, 2009. Applications and information requests can be sent to Prof. dr. Nick Ramsey, Rudolf Magnus Institute of Neuroscience, Dept. of Neurology and Neurosurgery, Division of Neuroscience, University Medical Center Utrecht, Room G.03.122, Heidelberglaan 100, 3584 CX, Utrecht, Netherlands, n.f.ramsey@umcutrecht.nl.




Posted 07/28/09

Postdoc: Evolutionary & Ecological Theory
University of Pennsylvania

POSTDOCTORAL FELLOWSHIP, U. Penn A postdoctoral fellowship (2 years) is available in the mathematical biology group of Dr. Joshua B. Plotkin at the University of Pennsylvania (http://mathbio.sas.upenn.edu/).

The specific research project is flexible and can be tailored to the interests of the individual, but it will fall under the broad purview of evolutionary and ecological theory. Areas of interest in the Plotkin lab include theoretical population genetics, the evolutionary ecology of viral populations, the evolution of robustness and adaptability, and the evolution of language and social norms.

Requirements for the position include: a proven record of self-motivated research; a PhD in mathematics, statistics, physics, biology or related area; excellent communication skills. The ideal candidate should also be familiar with scientific programming.

The postdoctoral fellowship provides a competitive annual stipend (minimum $38,000) plus benefits and health insurance. Start date and term are negotiable. Applications are welcome from candidates of any nationality, and will be reviewed starting August 15, 2009.

The Penn Genome Frontiers Institute offers an outstanding intellectual environmental. Research at the Institute addresses basic questions in biology through genomic, computational, and modeling approaches. Collaborations among research groups and across the broader Penn community are common. The Institute is housed in the newly constructed Lynch research building.

Applicants are encouraged to email a statement of research interests, CV, and contact details for three references to jplotkin@sas.upenn.edu. Informal inquiries are also welcomed.




Posted 07/28/09

Postdoc/Research Scientist
MPIDR in Rostock, Germany

The newly established Independent Research Group Modeling the Evolution of Aging at the MPIDR in Rostock, Germany, is seeking to make appointments at the PhD, Post-Doc, and Research Scientist levels.

Starting date as soon as feasible but preferably not later than 01.04.2010

The patterns of life are stunningly diverse, and so are the patterns of aging. Our group on "Modeling the Evolution of Aging" aims to discover the unifying principles and patterns underlying this diversity. We will ask why evolution favored a certain path of aging in a certain species. In particular, we will ask why some species age fast while others age slowly or even seem to escape aging all together. Can we understand aging across animals, plants, fungi and bacteria to a degree that allows us to identify the factors responsible for whether aging is fast, slow, or even reversed? We will develop generic models that capture aging for certain groups of species such as mammals, reptiles, or trees.

Our plan will be the following:

Our team will consist of people with a burning interest in theoretical modeling, a strong preference for revealing and understanding general mechanisms and unifying principles, and a strong interest in studying population dynamics in an interdisciplinary group. Our collective expertise should ideally cover skills and knowledge in theoretical modeling, evolutionary biology, life history biology, comparative biology (with a main focus on basic physiological, phylogenetic and ecological characteristics across the tree of life), demography, ecology, mathematics, dynamic optimization, programming, statistics, non-linear dynamics, complex adaptive systems and principles of self-organization. Our project is likely to cut across all the life sciences.

The group will be established by Dr. Annette Baudisch. The group will be part of the MPIDR in Rostock, a bike-ride away from the Baltic Sea. The institute is very international, with a warm and colleagial working atmosphere hosting a diverse range of labs with interdisciplinary topics. The working language of all groups including ours is English.

Applications should include a CV with relevant experience, educational degrees, a list of any publications and the contact details of 3 references. A description of your research interest and why you would enjoy becoming a member of our team would be very helpful. All material should be e-mailed to:
appl-irgmea@demogr.mpg.de, preferably in a single pdf file. Applications will be considered and positions will be filled on a rolling basis.

Post-Doc appointments are made postdoctoral stipends, respectively. Research scientists will be employed up to salary level 14 on the basis of the German TVöD system according to the qualification of the candidate and in accordance with the rules of federal employees in Germany.

The Max Planck Society wishes to increase the share of women in areas where they are underrepresented, and strongly encourages women to apply. The Max Planck Society is committed to employing more handicapped individuals and especially encourages them to apply.




Posted 07/27/09

RESEARCH ASSOCIATE POSITIONS (2 POSTDOCTORAL FELLOWS AND 1 BIOINFORMATICIAN)
UNIVERSITY OF MARYLAND

Several research positions are available immediately in Dr. Maricel Kann's Laboratory at the University of Maryland UMBC (http://umbc.edu/biosci/general/user/mkann) to develop computational approaches for the detection of protein domains and their interactions and to understand the molecular basis of diseases.

One postdoctoral position is focused on translational bioinformatics. Candidates will be expected to develop computational methodologies for the classification and clustering of molecular data related to human diseases. The ideal candidate is a highly motivated individual with a Ph.D. in computer science, mathematics, bioinformatics, or related fields. The position involves interaction with clinicians and experimental biologists in the field of cancer and pharmacogenomics. Background on structural biology and familiarity with clinical data are strong assets for this position. Non-US citizen applicants are encouraged to apply. The position is available immediately. Selection of candidates and interviews will be performed starting on August 15th and will continue until the position is filled. To apply, send an email to mkann@umbc.edu with CV, 3 publication or programming samples, a brief research interest statement, and the name of 3 references. Please use "postdoc_tbio position" in the subject.

The second postdoctoral position on computational biology requires expertise in the analysis of protein networks. Candidates will be expected to develop computational techniques for the prediction of protein interactions and analysis of protein interaction networks. The ideal candidate is a highly motivated individual with a Ph.D. in computer science, mathematics, bioinformatics, or related fields. The candidate will work in close collaboration with biophysicists and experimental biologists from several institutions. Non-US citizen applicants are encouraged to apply. The position is available immediately. Selection of candidates and interviews will be performed starting on August 15th and will continue until the position is filled. To apply, send an email to mkann@umbc.edu with CV, 3 publication or programming samples, a brief research interest statement, and the name of 3 references. Please use "postdoc_cbio position" in the subject.

Bioinformatician. This position requires a BS or MS in Bioinformatics or related field with experience in bioinformatics projects. The ideal candidate should have strong scientific programming skills and experience in data mining of biological and clinical data. The candidate will work in close collaboration with a team of researchers from several institutions. Non-US citizen applicants are encouraged to apply. The position is available immediately. Selection of candidates and interviews will be performed starting on August 15th and will continue until the position is filled. To apply, send an email to mkann@umbc.edu with CV, publication or programming samples, and the name of 3 references. Please use "biotech position" in the subject.




Posted 07/27/09

Visiting Assistant Professorship
Worcester Polytechnic Institute (WPI)

A Visiting Assistant Professor position for AY 2009-2010 has become available in the WPI Mathematical Sciences Department. The teaching load is a combination of seven-week undergraduate courses and/or one- semester graduate courses totaling five courses for the academic year. The salary is $51,000. The appointment will be for one year, with possible renewal contingent upon satisfactory teaching and research, at the discretion of WPI and the appointee.

We invite applicants in areas compatible with research interests in the department: partial differential equations with applications in continuum mechanics and composite materials, computational modeling and simulation, mathematical biology, financial mathematics, numerical analysis, optimization, control theory, applied probability, and discrete mathematics. An earned PhD or equivalent degree is required. Successful candidates must also demonstrate strong research potential and evidence of quality teaching, and will be expected to contribute to the department's research activities and to its innovative, project- based educational programs.

Applicants should submit a curriculum vitae and a statement of teaching and research objectives, and have sent three letters of recommendation, at least one of which addresses teaching potential. The preferred means of submission is by email to Professor Bogdan Vernescu, Department Head, atvernescu@wpi.edu.

For information about WPI and the Mathematical Sciences Department, see http://www.wpi.edu and http://www.wpi.edu/Academics/Depts/Math/. For inquiries about the position, please call the Mathematical Sciences Department at 508-831-5241.




Posted 07/22/09

Postdoc: Plant Community Ecology
Smithsonian Tropical Research Institute

Plant community ecology. Helene Muller-Landau (Smithsonian Tropical Research Institute) is seeking a postdoc to join in investigating plant species coexistence in tropical forests. The successful candidate will work with the PI and collaborators on theory development and tests of theoretical predictions using large, species-specific, spatially-explicit datasets from tropical forests.

The position is based at the Smithsonian Tropical Research Institute in Panama. Applicants should possess a background in theoretical ecology, expertise in coding mathematical and statistical models, and strong writing skills. Appointment is initially for one year, with the possibility of renewal. The starting date is flexible; earlier start dates are preferred.

To apply: Send CV, one relevant publication or manuscript, and names and email addresses of 3 references to Helene Muller-Landau, mullerh@si.edu. Applicants who will be attending the 2009 ESA meetings in Albuquerque should plan to meet with Helene during the meeting.

Review of applications will begin July 31, 2009 and continue until the position is filled.




Posted 07/21/09

Technical Writer - Bioinformatics
Roche

Roche is looking for a technical writer with experience in both bioinformatics and in scientific, technical, or medical writing. For details click here




Posted 07/21/09

Postdoctoral Position
Rice University

Department of Computational & Applied Mathematics (CAAM)
Rice University

The Department of Computational and Applied Mathematics at Rice University invites applications for a postdoctoral research associate position. The initial term of appointment is one year with a possible second year contingent upon availability of funding. The term of appointment will begin on or after August 1, 2009.

The focus of the research is on compressed sensing, machine learning, optimization, as well as their applications. Candidates should have finished a PhD in applied/computational mathematics, electrical engineering, statistics, operations research, or a related field by August 2009 or the time of appointment and no earlier than December 2006. The salary will be competitive.

For more information on related research at Rice, see:
http://www.caam.rice.edu/~optimization/L1/
http://dsp.rice.edu/cs

Rice University is a private research university with a long tradition of excellence in undergraduate and graduate science and engineering education. The Department of Computational and Applied Mathematics hosts research programs in optimization, numerical linear algebra, control and inverse problems, mathematical biology, and partial differential equations. Interdisciplinary work is a fundamental aspect of the Department's program.

Applicants should send a letter of application, current vita, and descriptions of research plans to:
Search Committee: Postdoctoral Research Associate
Department of Computational and Applied Mathematics
MS 134
Rice University
6100 Main Street
Houston, Texas 77005-1892

At least three letters of reference are required; the candidate should have these sent directly to the above address. To contact us via email, please usewyin@rice.edu.

Rice University is an Affirmative Action, Equal Opportunity institution.




Posted 07/14/09

Postdoc Position
Dipartimento di Matematica, Politecnico di Milano

A postdoc position is now open at the Dipartimento di Matematica, Politecnico di Milano.

The grant is devoted to "Multiscale fluid dynamics and fluid--structure interaction" and is supported by the Mathcard project on "Mathematical Modelling and Simulation of the Cardiovascular System" (www.mathcard.eu) headed by professor Alfio Quarteroni.

Suitable candidates should hold a PhD in applied mathematics, physics, or engineering, with a strong background in computational mechanics (finite elasticity and/or fluid mechanics) and numerical methods, in particular finite elements. He/she should also have strong skills and passion for scientific programming and is supposed to take a leading role in the development of the scientific software LifeV (www.lifev.org)

Deadline for application: 20th September 2009
Start up: January 2010
Duration: 1+1 years
To apply send a CV to luca.formaggia@polimi.it




Posted 07/14/09

Postdoc: Spatiotemporal Modeling
University of New Mexico

Postdoctoral Position available immediately at the University of New Mexico Center for Spatiotemporal Modeling. This NIH-funded National Systems Biology center focuses on quantitative use of fluorescence and electron microscopy approaches to build large data sets for mathematical modeling of cell signaling processes. Laboratory has state-of-the-art equipment for live cell imaging, single particle tracking, FRET/FRAP, TIRF and ratio imaging of intracellular calcium. New capabilities in hyperspectral imaging are under development.

The postdoctoral associate will focus on spatio-temporal aspects of calcium regulation in immune cells. The ideal candidate will have familiarity with ion channel biology, using either ratio imaging or patch clamping, and/or have experience in mathematical models of ion transport.

The interdisciplinary laboratory group is located on UNM Medical School campus and interacts with computational groups at nearby national laboratories. The state of New Mexico is famous for beautiful blue skies and mild weather. Outdoor enthusiasts enjoy skiing and hiking. Send CV to bwilson@salud.unm.edu.




Posted 07/14/09

PhD and Postdoc Positions: Microsoft Research
U Trento CoSBi

PhD fellowships and 2 postdoctoral positions are open in the Microsoft Research - University of Trento Centre for Computational Systems Biology (http://www.cosbi.eu) to work with Attila Csikasz-Nagy on computational models of biological systems.

Two positions are sponsored by the HFSP on the project "Quantitative study of polarized cell growth in vivo and in silico", the other three positions are sponsored by CoSBi to work on models of p53 regulation, cell and tissue growth.

More details on the research programs and the doctoral school can be found here:
http://www.cosbi.eu/index.php/research/projects/hfsp
http://www.cosbi.eu/index.php/scientific-plan/biological-research
http://portale.unitn.it/drbs/

Inquiries can be sent to csikasz@cosbi.eu

The application deadline for the PhD positions is the 30th September 2009. The postdoc positions are open until filled.




Posted 07/13/09

Research Staff and Postdoc Openings
Sandia National Labs - California

The Informatics and Decision Sciences Department at Sandia National Laboratories in Livermore, California develops new algorithms, theory, and software in machine learning, matrix and tensor methods, information retrieval, data mining, complex systems modeling and analysis, and related areas. We deal with large-scale, complex, real-world problems that require innovative, but realistic solutions, often utilizing advanced hardware platforms. The work of the department impacts a wide variety of applications in national security, engineering, energy, computational biology, systems studies, and other areas.

We have multiple openings in computer science and applied mathematics for full-time researchers at the junior and senior levels as well as postdocs. We are particularly looking for experts in informatics and data mining, numerical algorithms for simulations, and/or computational mathematics for complex systems. Our staff members are expected to conduct innovative research, publish and present results in refereed journals and conferences, develop open-source software, and seek out new and interesting problems of national importance.

The full advertisements are available online at:
http://csmr.ca.sandia.gov/~tgkolda/jobs/SNL_62042_HA_8962_FTE_ec.pdf http://csmr.ca.sandia.gov/~tgkolda/jobs/SNL-62808_HA_8962_PD_vl.pdf




Posted 07/07/09

Research Associate/Fellow: Modelling Wound Healing
Queensland University

Sean McElwain and Scott McCue have a position as a Research Associate/ Research Fellow in Modelling Wound Healing available for 18 months. The position is funded by an Australian Research Council Discovery Grant on the role of oxygen in regulating the critical processes in successful wound healing and in chronic wounds. Applicants should have a PhD qualification in Applied Mathematics or a closely-related discipline. Applicants should have high-level numerical computing skills, mathematical modelling and analytical skills, experience in continuum mechanics and competency with computer-based numerical packages such as MATLAB. To be appointed at the Research Fellow grade the applicant should have previous experience at the postdoctoral level.

Applicants should have record of publishing scientific results in relevant journals as well-developed written and verbal communication skills and the ability to work effectively as part of a research team.

For more details on the project and to submit an application by 24 July 2009 go to http://www.hrd.qut.edu.au/jobs/ and see position number 29204 or email: s.mcelwain@qut.edu.au or scott.mccue@qut.edu.au




Posted 07/07/09

Postdoc: Theoretical Ecology
U Chicago & U Michigan

Stefano Allesina (University of Chicago) and Mercedes Pascual (University of Michigan) are seeking a postdoc to work on theoretical aspects of food webs and other ecological networks. In particular, the postdoc will work on simple models for food web structure and their interface to data, including likelihood approaches. The successful candidate is expected to develop new models, analyze and improve current ones, and investigate the basic biological properties underlying network structure (e.g. phylogeny, allometry, trophic levels).

The position requires training in theoretical or mathematical ecology, probability/statistics, and excellent programming skills. It is available for two years (one year with the possibility of a renewal). Salary and benefits are very competitive. The postdoc will be based at the University of Chicago and is expected to spend time at the University of Michigan as well.

Review of applications will begin immediately and will continue until the position is filled. The anticipated starting date is October 1, 2009.

Application:
To apply, please send to Stefano Allesina (at sallesina@uchicago.edu), a cover letter, a CV, a statement of research, and two names and contact information for letters of recommendation.




Posted 07/07/09

Postdoc Position
ETH Zurich

Applications are invited for a Post-Doc position, within the Computational Biology Group at the Department of Biosystems Science and Engineering of ETH Zurich.

The group focuses on the development of detailed, predictive models for cellular signaling networks with a view to develop a comprehensive understanding of the dynamics and evolution of cellular signaling. Projects are carried out in close collaboration with experimental groups so that quantitative data is available and model predictions can be tested in experiments.

Applicants should have a strong background in mathematical and computational modeling or statistics, and demonstrated experience in nonlinear dynamics and numerical calculations.

The Department of Biosystems Science and Engineering of ETH Zurich is an integral part of SystemX.ch, the Swiss initiative in Systems Biology. It is located in Basel, a European hotspot for biomedical research, in close proximity of the Biozentrum of the University of Basel, the Friedrich Miescher Institute for Biomedical Research, and the pharmaceutical and biotech industry. ETH Zurich is a major research university, offering an excellent environment for innovative and collaborative research across disciplines.

Please send the usual application material, including at least two references, as a single PDF file to dagmar.iber@bsse.ethz.ch (preferred), or via surface mail to:

Prof Dagmar Iber
ETH Zurich
D-BSSE
Mattenstrasse 26
4058 Basel
Switzerland

For further information please visit our web page at:
http://www.dbsse.ethz.ch/research/group_iber




Posted 07/07/09

Postdoc Programme, Systems Biology
CNRS-MPG

The CNRS-MPG Post-Doctoral Programme for Systems Biology was founded by the Max-Planck-Gesellschaft and the Centre National de la Recherche Scientifique, with the common goal to increase cooperation in this new field of investigation and to encourage the mobility of young scientists engaged in the pursuit of excellence.

MPG and CNRS invite applications from outstanding young scientists who are engaged or wish to engage in research in Systems Biology. Successful applicants will have demonstrated their ability to perform excellent research. They will be expected to run their personal research project, thus laying the foundations for a successful career in science. They will be offered a high-quality post-doctoral position with an initial 2-year contract and a possible 1-year extension. In addition they will receive 20 k¤ p.a. for material resources and travel expenses

Applications should include a CV, a list of publications, copies of two publications, two letters of reference, a one-page summary of scientific achievements, a two-page research plan, and their choice of two host institutions. One of these institutions should be chosen from the MPG list, and the other from the CNRS list. One of these two institutions should be marked as "main host facility". Scientists of any nationality are welcome to apply, although German applicants are expected to designate a French main host, and vice-versa. Geographic mobility is a requirement.

A detailed description of the programme and application instructions are found on the following web site:
http://www.mpi-magdeburg.mpg.de/CNRS_MPG/Job%20opportunities

The deadline for application is 30 September 2009. Suitable candidates are invited to apply to both, the MPG Division for International Relations, and the CNRS Office of European Affairs.

Michaela.Zimmermann@gv.mpg.de
Anne-Marie.Brass@cnrs-dir.fr




Posted 07/01/09

Career Opportunities and Internships
Sophic

Sophic is interested in MS and PhD grads. They are also interested in providing internships. For information click here.




Posted 06/29/09

Postdoc on Uncertainty propagation in multiscale systems
K.U.Leuven, Belgium

Postdoctoral position on "Computational aspects of uncertainty propagation in multiscale systems" at K.U.Leuven, Belgium

Many problems in science and engineering are characterized by the presence of multiple scales. In the Scientific Computing Group at the dept. of Computer Science, K.U.Leuven, we develop numerical techniques for the simulation and analysis of multiscale models, with emphasis on the 'equation-free framework' and RVE-based micro/macro methods.

In a new project, we aim to quantify and to control the inherent uncertainty at the coarse scale that originates from the use of stochastic fine-scale models. Due to the fine-scale stochasticity, propagates into the coarse model and how it affects the coarse solution. The aim is to reduce this numerical noise, and to investigate how to match the resulting errors with those resulting from other sources, such as discretisation errors.

For this project we are looking for a candidate holding a masters degree or PhD in either Applied Mathematics/Numerical Mathematics/Scientific Computing or similar disciplines, who is interested to work on this project, in collaboration with other researchers in the group.

The position at the pre-doctoral level will be initially for one year. After a positive evaluation, this position will be extended for three more years. The position at the post-doctoral level is for one year with the possibility of extension for a second year. The position can commence immediately.

Interested candidates should submit their application by email to Dirk.Roose@cs.kuleuven.be and to Giovanni.Samaey@cs.kuleuven.be.

The email should contain a pdf-file as an attachment with the following information:

Dirk Roose
Dept. Computer Science, K.U.Leuven
Celestijnenlaan 200A, B-3001 Leuven-Heverlee, Belgium
Dirk.Roose@cs.kuleuven.be

Disclaimer: http://www.kuleuven.be/cwis/email_disclaimer.htm




Posted 06/29/09

PhD/Postdoc position in Comput. Biology
University of Halle, Germany

Applications are invited for a two-year position in the Numerical Mathematics Group at the University of Halle. The position is available immediately.

Research Topic: Multiscale structure-functional modeling of musculoskeletal mineralized tissues (MMTs).

This project is funded within the DFG Priority Research Program SPP1420 on "Biomimetic Materials Research: Functionality by Hierarchical Structuring of Materials" and involves a close cooperation with the group of Prof. K. Raum at the Berlin-Brandenburg School for Regenerative Therapies at Charite Universitatsmedizin Berlin. For more information visit http://sim.mathematik.uni-halle.de/gerisch/Projects/SPP1420/

The ideal candidate should have a strong background in numerical mathematics and scientific computing. Experience in computer programming (Matlab, possibly Comsol Multiphysics) is essential and acquaintance with elasticity theory is a plus. The position requires the willingness to engage in interdisciplinary research and good (English) communication skills.

In line with the university's policy of equal opportunities, applications from qualified women are particularly encouraged. Handicapped applicants will be preferred in case of the same qualification. To apply (not later than 31 July 2009, review starts immediately) send full CV, cover letter, and contact details of at least two scientists willing to provide a reference to: Dr. Alf Gerisch, Martin-Luther-Universitat Halle-Wittenberg, Naturwissenschaftliche Fakultat III, Institut fur Mathematik, 06099 Halle (Saale), Germany.




Posted 06/29/09

Jobs and Fellowships
University of Warwick

There are opportunities at the Mathematics Institute, University of Warwick, UK:- 2 Fixed Term (1 or 2 years) Assistant Professorships.

The department also seeks to support high quality applications for EPSRC and EU Marie-Curie Post-Doctoral Fellowships.

See http://www2.warwick.ac.uk/fac/sci/maths/jobs.

Informal enquiries from potential applicants in numerical analysis, computational applied mathematics, mathematical analysis, modelling and PDEs with applications in the physical and life sciences may be addressed to Charlie Elliott (C.M.Elliott@warwick.ac.uk) or Andrew Stuart (A.M.Stuart@warwick.ac.uk).




Posted 06/29/09

Head of Junior Research Group/Guest Professorship
The University of Berlin

The DFG Research Center MATHEON "Mathematics for key technologies: Modelling, simulation and optimization of real-world processes", and the Department of Mathematics of the Humboldt-University Berlin are inviting applications for the position of the:

Head of Junior Research Group for Numerical Analysis (postdoctoral research fellow) - Vgr. Ib -BAT-O nach Anw.TV HU or guest professorship in case of equivalent qualification.

The initial contract duration will be until May 31, 2010. After a positive evaluation, an extension of the contract for further four years is possible.

Several fields of Numerical Analysis at the heart of many mathematical simulations in current key technologies involve ordinary, partial stochastic differential equations, or variational inequalities and their computation. The head of the junior research group should be an expert in an area of Numerical Analysis and Scientific Computing and should also have expertise in at least one of the application areas of the DFG Research Center MATHEON. He/She should be interested in cooperating with engineers and scientists as well as industrial practitioners and be ready to engage in applied projects and to collaborate within the research center.

For the position of the head of junior research group, the DFG Research Center MATHEON is looking for junior scientists who have proven their scientific independence and who are building up their own research program. The initial contract duration will be until May 31, 2010. After a positive evaluation, an extension of the contract for a total of 6 years is possible. The position include funds to hire a research assistant, plus money for travel and visitors. Salary will be on the BAT Ib level and, assuming appropriate qualification, the position can be upgraded to a guest professorship.

An intensive participation in the running of the Research Center and in the scientific training of the younger researchers in the Center will be expected.

For further information see http://www.matheon.de

Please send your written application and the usual documents (reference number: DR/044/09) a.s.a.p. to the Humboldt-Universitat zu Berlin, Prof. C. Carstensen, Institut fur Mathematik, Unter den Linden 6, D-10099 Berlin.

The University envisages to ensure equal opportunity for men and women, applications from female candidates with the advertised qualifications are explicitly solicited. Severely disabled applicants with equivalent qualifications will be given preferential treatment.




Posted 06/24/09

Operations Analyst
Metron

Perform operations analysis using Metron developed simulation tools, MATLAB, and Microsoft Excel. Interact with customers, both onsite and offsite, gather requirements and data, write and present briefings, and contribute to the development of Metron tools. Contribute to technical team activities (design, modeling, prototyping, coding, testing, and documentation) in full-life cycle of products.

Work in small teams, led by Senior Analysts, who work closely with the new employees. Projects typically involve developing advanced algorithms implemented in a computer prototype system for our R&D customers. Each member of a project team has the opportunity to participate in the entire prototype system development process, from the initial system concept and underlying mathematical models, through software and algorithm design, implementation and demonstration

Desired Qualifications:

Position Location: Reston, VA

All applicants who have recently graduated (within the last 5 years) or that are still in school must send transcripts. These do not have to be official.

Metron, Inc. is an Equal Opportunity Employer.

Security Requirement:
Successful candidates will be subject to a security investigation and must meet eligibility requirements for access to classified information

Please apply online at www.metsci.com




Posted 06/24/09

Temporary Lectureship: Pure/Applied Mathematics
University of Glasgow

1 and 2 year Temporary Lectureships at the University of Glasgow

The University intends to make one-year and two-year appointments in Pure and/or Applied Mathematics with effect from 1 September 2009, or as soon as possible thereafter.

The successful applicant will pursue a world-class research programme in Pure or Applied Mathematics; be able to teach mathematics at any undergraduate and/or postgraduate level; and will carry out allocated administrative tasks as required by the Head of Department. Preference may be given to applicants who will strengthen our research groups in Pure or Applied Mathematics (Algebra, Analysis, Number Theory& Combinatorics, Geometry& Topology, Integrable Systems& Mathematical Physics, Elasticity, Fluid Dynamics& MHD, and Mathematical Biology).

Full details can be found at:
http://www.jobs.ac.uk/jobs/SO637/Temporary%20Lecturers%20in%20Pure%20and%20or%20Applied%20Mathematics/

Closing date: 17th July.




Posted 06/24/09

Postdoc Position: Computational Biology
University of Halle, Germany

Applications are invited for a two-year position in the Numerical Mathematics Group at the University of Halle. The position is available immediately (desired starting date 1 October 2009).

Research Topic: Multiscale structure-functional modeling of musculoskeletal mineralized tissues

This project is funded within the DFG Priority Research Program SPP1420 on "Biomimetic Materials Research: Functionality by Hierarchical Structuring of Materials" and involves a close cooperation with the group of Prof. K. Raum at the Berlin-Brandenburg School for Regenerative Therapies at Charite Universitatsmedizin Berlin. For more information visit http://sim.mathematik.uni-halle.de/gerisch/Projects/SPP1420/

The ideal candidate should have a strong background in numerical mathematics and scientific computing. Experience in computer programming (Matlab, possibly Comsol Multiphysics) is essential and acquaintance with elasticity theory is a plus. The position requires the willingness to engage in interdisciplinary research and good (English) communication skills.

In line with the university's policy of equal opportunities, applications from qualified women are particularly encouraged. Handicapped applicants will be preferred in case of the same qualification. To apply (not later than 31 July 2009, review starts immediately) send full CV, cover letter, and contact details of at least two scientists willing to provide a reference to: Dr. Alf Gerisch, Martin-Luther-Universitat Halle-Wittenberg, Naturwissenschaftliche Fakultat III, Institut fur Mathematik, 06099 Halle (Saale), Germany.




Posted 06/22/09

Research Associate/Research Assistant Professor
The University Of Western Australia

RESEARCH ASSOCIATE/RESEARCH ASSISTANT PROFESSOR (REF: 2821) SCHOOL OF COMPUTER SCIENCE AND SOFTWARE ENGINEERING
THE UNIVERSITY OF WESTERN AUSTRALIA

Computational Modelling of Biological Tissues
3 year appointment
Closing date: Friday, 3 July 2009

This is an Australian Research Council (ARC) and National Health& Medical Research Council (NH&MRC) funded project. Computational Models will be developed to describe tissue response to mechanical and chemical stimulus. Typically models will combine poro-elastic models with inter and intra-cellular communication (systems biology). The project focus is on tissue undergoing deformation, specifically articular cartilage and sub-conjunctiva and relates to tissue engineering and regenerative medicine in diseases such as osteoarthritis and glaucoma. The applicant will closely collaborate with team members of the Engineering Computational Biology group at UWA and medical collaborators at UWA, MIT (USA) and Centre for Eye Research Australia (Melbourne).

For further information regarding the position please contact Bruce Gardiner on +61 (08) 6488 1537; email bruce.gardiner@uwa.edu.au or go to: https://www.his.admin.uwa.edu.au/jobvacs/external/academic/doc/doc1418981.RTF




Posted 06/22/09

BioMed Postdoc
CSCAMM, University of Maryland

The Center for Scientific Computation and Mathematical Modeling (CSCAMM) at the University of Maryland, College Park, invites applications for one or more post-doctoral Research Associate positions, starting September 1, 2009. The primary goal of the Center is to foster research activity that highlights scientific computation as a complementary avenue to theory and experiment. More about CSCAMM can be found at www.cscamm.umd.edu.

Successful applicants are expected to have a strong component of their research devoted to developing and studying mathematical models for biomedical problems. The various projects involve opportunities to collaborate with experimentalists and with medical doctors on contemporary problems in cancer, immunology, and cell motility. The preferred candidates should be highly motivated and independent. He/she should hold a Ph.D. in Applied Mathematics (or in a related discipline) and have experience in developing, analyzing, and simulating mathematical models for biomedical problems. The positions will be supervised by Prof. Doron Levy.

Appointments are for two years subject to an annual performance review. The incumbent is expected to be actively involved with the educational and research activities at CSCAMM and at the department of Mathematics. Annual salary is $50,000 with an additional $2,000/yr for support of the incumbent?s research. Qualified applicants must file their application electronically at the CSCAMM website: http://www.cscamm.umd.edu/postDoc_app , including their curriculum vitae and a research statement. Applicants should also arrange for three letters of recommendation to be mailed or e-mailed to:

BioMed Post-Doc
CSCAMM
4146 CSIC (Building #406)
University of Maryland
College Park, MD 20742-3289
BioMedPostDoc@cscamm.umd.edu

Full consideration will be given to applications received before June 30, 2009.




Posted 06/22/09

Research Associate/Fellow
The Virtual Seed, Nottingham University

Applications are invited for this post at the University of Nottingham. This BBSRC-funded project, which is part of a multidisciplinary programme involving a number of European partners, will develop mathematical models describing seed dormancy and the dynamics of germination.

Candidates should have, or expect shortly to obtain, a PhD in applied mathematics or a related area and have a proven interest in multidisciplinary research. Expertise in differential equations, continuum mechanics and/or statistical modelling will be an advantage.

Reference : SCI673
Closing Date : 30 June 2009
This post is available from 1 August 2009 and will be offered on a fixed-term contract for a period of three years.

Please see this link for more information:
http://jobs.nottingham.ac.uk/VacancySearch.aspx?txtSearch=sci673




Posted 06/22/09

Postdoctoral Research Fellow (Part-time)
Nottingham University

Virtual Physiological Human Network of Excellence: Integration and training activity

Applications are invited for the above EU-funded post to work on a major multidisciplinary, multinational project involving 13 academic and research institutes across Europe. The project is part of the EU 7th Framework VPH-NoE project which aims to lay the foundations for the methodological and technical framework needed to support research in the modelling and simulation of human physiology and disease related processes. The workpackage the CMMB is responsible for is the development of a portfolio of interdisciplinary training activities including a formal consultation and assessment of VPH related careers.

Candidates must have a PhD in a branch of mathematical sciences or a closely related field and an understanding of the need for multidisciplinary research. Previous experience of biological applications is not essential. This post will require the person appointed to be able to work independently and as part of a team, to be flexible and to have good communication, interpersonal and organisational skills.

Main duties and responsibilities will be to (i) assist with organisation of research/training events such as Study Groups, Workshops and Scholar Exchange programmes, (ii) assist with the management and support of training related activities within the Europe-wide consortium, (iii) provide regular reports to the Consortium and EU.

Reference : SCI681
Closing Date : 30 June 2009
Salary : £27,183 per annum, pro rota
This post is available from 1 August 2009 and will be offered on a fixed-term contract for a period of two years.
Hours of work are 29 per week, days to be agreed.

Further details can be found at http://jobs.nottingham.ac.uk/vacancies.aspx?cat=160#j5425




Posted 06/22/09

Postdoc Position: Modelling Infection & Immunity
UNSW, Sydney

Post-doctoral scientist - Complex Systems in Biology Group,
University of New South Wales, Sydney, Australia

The Complex Systems in Biology Group is seeking an experienced post-doctoral mathematician / physicist / engineer / computer scientist / bioinformatician to work on modelling in infection and immunity. The projects we are currently working on range from viral dynamics in HIV, diversity of T cell responses, and dynamics of immune responses to a variety of infections. The group consists of 11 researchers working on various aspects of infection and immunity, applying biostatistics, bioinformatics, modelling approaches to experimental data. The group works closely with a number of experimental collaborators to plan experiments, model and analyse data, and provide biological understanding. The group is highly productive (publishing 15 papers in 2008), and a supportive environment for an experienced scientist to retrain in quantitative biology.

The University is around 5km from central Sydney, and 1km from the beaches. The CSB group will move into a newly built research precinct in Nov 2009. More information on the group is at: http://www.cvr.net.au/CVRWeb.nsf/page/csb. Enquiries about the position may be made to A/Prof Miles Davenport (m.davenport@unsw.edu.au).

The position will be formally advertised on the UNSW website (http://www.hr.unsw.edu.au/services/recruitment/employment.html) in due course. All details of the position will be placed on the website, and formal applications must be through the University website. The University is an equal opportunity employer.




Posted 06/22/09

Postdoctoral Fellow
The Virtual Heart, Graz

Starting on August 1, 2009, there is an open position for a Postdoctoral Fellow within the project:

"The Virtual Heart" embedded in the special research group (SFB) on "Mathematical Optimization and Applications in Biomedical Sciences"

Hosted at the Karl Franzens University Graz (KFU), the Graz University of Technology (TUG) and the Medical University Graz (MUG).

The SFB incorporates eight interdisciplinary research projects headed by scientists from Applied Mathematics and Medical Engineering. For more details see the project descriptions on the web page http://math.uni-graz.at/mobis/.

Project 1 - "Numerical Techniques for the Cardiac Bidomain Equations"

Supervisors: Gernot Plank/Gundolf Haase

For this project we are looking for a candidate holding a masters degree or PhD in either Applied Mathematics/Numerical Mathematics/Scientific Computing or similar disciplines that provide a suitable background for developing methods for the numerical solution of PDEs in a largescale parallel computing context. Although recent advances have led to significant improvements in terms of numerical efficiency, bidomain simulations of entire human hearts remain to be a challenge. The numerical work to be carried out in this PhD project aims to further improve the numerical efficiency of our numerical framework to allow realistic bidomain simulations of the electrical activity in a human heart over several tens of seconds.

The candidate should have a general interest in Life Sciences, particularly in cardiac electrophysiology. Reasonable coding skills are expected.

Please send your application by email to gernot.plank@meduni-graz.at.

Your email should contain a pdf file as an attachment with the following information:

Link: http://math.uni-graz.at/mobis/heartjobs.html




Posted 06/22/09

Postdoc positions
Colorado State, Florida State, and Penn State

Three postoc positions Colorado State, Florida State, and Penn State Universities.

Three postdoc positions starting August 15, 2009 and lasting at least 1.5 years are available, one each at Colorado State, Florida State, and Penn State, for a collaborative effort in regional ocean modeling led by Qiang Du (Penn State University), Don Estep (Colorado State University), and Max Gunzburger (Florida State University). In addition, candidates hired for these positions will closely collaborate with Todd Ringler at the Los Alamos National Laboratory. Potential projects include developing algorithms for modeling interactions between parameterized and fully-resolved dynamic and tracer models; verifiable, goal-oriented regional mesh refinement strategies; time-stepping schemes for variable resolution spatial discretizations; and frequency-dependent eddy viscosity models.

A background in areas related to these types of activities is desirable as is some knowledge of the applications problems to be considered. Those interested in applying for any of the three positions should send, via email, their CV and have two or three letters of reference sent, also via email, togunzburg@fsu.edu. Only materials submitted in this electronic manner will be considered. Applications will be considered until the positions are filled.

CSU, FSU, and PSU are Equal Opportunity Employers. Applications from minority and female candidates are especially encouraged.




Posted 06/22/09

Postdoc position in GPU Environments
NTNU, Norway

Post Doc at Department of Computer and Information Science within Computational GPU Environments (High Performance Computing)

One Post Doc position is offered at the Department of Computer and Information Science, Norwegian University of Science and Technology in Tromdheim, Norway. The position is for 2 years.

This position focuses on addressing some of the computer science related issues relating to developing a programming environment for harnessing the computational power of modern GPUs (Graphical Processing Units) and multicore CPU systems. In particular, we believe the integration of parallel programming tools with graphics and visualization techniques, has enormous potential for exciting research.

A PhD in Computer Science and Engineering is required. It is desirable that the candidate has experience with MPI, OpenMP, pthreads and CUDA / OpenCL as well as familiarity with OpenGL. Knowledge of computational methods related to petroleum engineering and/or medicine is also of benefit.

Contact: Dr. Anne C. Elster
telephone: +1 512 340-0328 (until June 18, 2009)
email:elster@idi.ntnu.no

The appointment is at code 1352, salary level 57-76 in the national salary scheme, gross NOK 435 500-625 900 (ca. USD 67 000-96 000) per annum, of which 2% is deducted for the State Pension scheme. Starting salary expected to be at level 57. The salary might be adjusted, after negotiation with the employer, to reflect applicant's experience.

The successful applicant must agree to the conditions laid down for public employees. Residence is required.

The position is available on an equal opportunities basis, and both Norwegian, EU and non-EU applications are welcome. NTNU is strongly committed to diversity within its community and encourages applications from women and members of ethnic minorities.

The application must contain: information about education, examinations, previous experience. Certified copies of certificates and documents must be attached. Three copies of publications and any other work which the applicant wishes to be taken into account should also be enclosed. Joint works will be considered. If it is difficult to specify the input of the applicant in a joint work, a short summary should be attached outlining the applicant's input. Please list the submitted publications in the application.

Applications are to be sent to the Norwegian University of Science and Technology, Faculty of Information Technology, Mathematics and Electrical Engineering (IME), NO-7491 Trondheim, Norway or by e-mail to application@ime.ntnu.no. Applications sent in as soon as possible, and no later (by e-mail) than June 18. Please put "IME-026-2009" in the subject line.




Posted 06/22/09

Postdoc position in BioMedical Math
University of Maryland

The Center for Scientific Computation and Mathematical Modeling (CSCAMM) at the University of Maryland, College Park, invites applications for one or more post-doctoral Research Associate positions, starting September 1, 2009. The primary goal of the Center is to foster research activity that highlights scientific computation as a complementary avenue to theory and experiment. More about CSCAMM can be found at www.cscamm.umd.edu.

Successful applicants are expected to have a strong component of their research devoted to developing and studying mathematical models for biomedical problems. The various projects involve opportunities to collaborate with experimentalists and with medical doctors on contemporary problems in cancer, immunology, and cell motility. The preferred candidates should be highly motivated and independent. He/she should hold a Ph.D. in Applied Mathematics (or in a related discipline) and have experience in developing, analyzing, and simulating mathematical models for biomedical problems. The positions will be supervised by Prof. Doron Levy.

Appointments are for two years subject to an annual performance review. The incumbent is expected to be actively involved with the educational and research activities at CSCAMM and at the department of Mathematics. Annual salary is $50,000 with an additional $2,000/yr for support of the incumbent's research. Qualified applicants must file their application electronically at the CSCAMM website (http://www.cscamm.umd.edu/postDoc_app, including their curriculum vitae and a research statement. Applicants should also arrange for three letters of recommendation to be mailed or e-mailed to:

BioMed Post-Doc
CSCAMM
4146 CSIC (Building #406)
University of Maryland
College Park, MD 20742-3289

BioMedPostDoc@cscamm.umd.edu

Full consideration will be given to applications received before June 30, 2009.




Posted 06/22/09

Lecturer position in Computational Mathematics
Lecturer position in Computational Mathematics

Lecturer in Computational Mathematics
Centre for Numerical Algorithms and Intelligent Software
Heriot-Watt University, Edinburgh, UK
http://www.ma.hw.ac.uk/maths

Applications are invited for a permanent (tenured) lectureship in computational mathematics. You will normally hold a PhD in mathematics or a related subject and will have an excellent research track record (including multiple publications) in an area of numerical analysis or scientific computing. You will have well formulated research plans for the development or analysis of new algorithms for high performance computing in line with the aims of the new £8M Centre for Numerical Algorithms and Intelligent Software (NAIS) (www.nais.org.uk). You will also be committed to excellence in teaching at the undergraduate and postgraduate levels. For established academics who have already demonstrated sustained excellence in research leadership, we may consider appointment at a higher level.

NAIS is a joint project of Heriot-Watt University, the University of Edinburgh and the University of Strathclyde.

The post is available at a mutually agreed date on or after 1st December 2009.

Closing date: 20 July 2009

Please see http://www.hw.ac.uk/hr/v_academic.php#6509 for forms and further particulars. Informal enquiries may be made to Professor Dugald Duncan (D.B.Duncan@ma.hw.ac.uk).




Posted 06/22/09

Full Professorship in Applied Mathematics
University of Goettingen

The Institute for Numerical and Applied Mathematics at the University of Goettingen invites applications for a Tenured Full Professorship in Applied Mathematics (succession of R. Kress) to be filled starting April 1st, 2010.

The research area of applicants should have connections to Partial Differential Equations and should complement the research activities of the other professorships at the institute. In particular, a substantial cooperation is expected with the Graduate School "Identification in Mathematical Models" and/or the Collaborative Research Center "Nanoscale Photonic Imaging". Teaching duties lie within the Bachelor/Master and doctorate programs of the Faculty of Mathematics and Computer Science.

Additional information is available under:
http://www.math.uni-goettingen.de/aktuelles/am-ausschreibung.html
and
http://www.math.uni-goettingen.de/aktuelles/am.html




Posted 06/22/09

Health IT Consultant

I am the President of the Dorenfest Group, a healthcare consulting and investment company based in Chicago. We also have an office in Shanghai, China (please see our website, http://www.dorenfest.com, for a company description). Our China business provides hospital IT management consulting for Chinese hospitals and health bureaus. Our business is growing fast in China. We are enlarging our staff of health IT consultants based in China. We are looking for Chinese-born people, fluent in Mandarin and English, who are specialized in health IT and who want to come back to work in China. (Please see the job announcement, http://www.dorenfest.com/ASP/ChinaCareer.asp, for the type of people we are looking for.)

I am writing to ask for your help in identifying some of your students who might be interested in working for us in our China company. We appreciate any help you can give us. Look forward to hearing from you.

Sheldon Dorenfest




Posted 06/22/09

Post-doctoral Fellowship
Cognition, Affect, and Temperament Lab

The Cognition, Affect, and Temperament Lab (http://mason.gmu.edu/~kperezed/) is seeking applications for a post-doctoral fellowship.

The selected fellow will be part of an NIH-funded study of the developmental consequences of early temperament. As part of this two-decade longitudinal study, the post-doctoral fellow will oversee an extensive fMRI study of the neural correlates of attention and reward processing in young adults with a childhood history of extreme temperament. Fellows will participate in an active laboratory, contributing to study design, data collection, data analysis, training and supervision of research assistants, co-authoring publications, and the dissemination of findings. This work will be done in collaboration with the research team at the University of Maryland and the NIMH.

Interested candidates should have a PhD in psychology or neuroscience and advanced expertise in one, preferably more, of the following:

Additional skills required include competence in planning and multitasking, attention to detail, excellent organizational skills, the ability to communicate verbally and in writing, and a willingness to adapt to the changing demands of a dynamic research environment.

The position begins Fall 2009 and is a two-year appointment.

Applicants should submit a CV, a statement of research interests and career goals, and one representative publication or paper to Koraly Perez-Edgar a kperezed@gmu.edu. Please use 'fMRI Post-Doctoral Application' as the subject line of the e-mail.




Posted 06/12/09

Multiple Job Listings
Biophysical Society Job Board

Have you visited the Biophysical Society Society Job Board lately? If not you might be missing one of these opportunities:

Biophysical Core Manager-- University of Washington
Postdoctoral Fellow or Research Assistant--BIDMC - Harvard Medical School
Analytical Chemist--Solutia Inc.
Posdoc-- Albert Einstein College of Medicine
Postdoctoral Researcher-- University of Wisconsin
Research Associate--Loyola University
Postdoctoral Position--University of Chicago
Postdoctoral Fellow--Boston Biomedical Research Institute
Postdoc--University of Washington
Postdoctoral Researcher--Rice University
Research Assistant Member--Benaroya Research Institute
Postdoctoral Research Fellow--NIH, National Institute on Drug Abuse

Visit http://www.biophysics.org/CareerCenter/JobBoard/tabid/111/Default.aspx today to upload your resume and apply for one of these positions.




Posted 06/12/09

Intern Opportunities, Space Life Sciences
National Space Biomedical Research Institute

The National Space Biomedical Research Institute (NSBRI) is soliciting applications for its Postdoctoral Fellowship Program. Two-year fellowships are available in any U.S. laboratory carrying out space-related biomedical or biotechnological research that supports the NSBRI's goals. NSBRI research addresses and seeks solutions to the various health concerns associated with long-duration human space exploration.

Applicants must submit proposals with the support of a mentor and institution, and all proposals will be evaluated by a peer-review panel. The program is open to U.S. citizens, permanent residents, or persons with pre-existing visas obtained through their sponsoring institutions that permit postdoctoral training for the project's duration.

Detailed program and application submission information is available on the NSBRI Web site at www.nsbri.org/Announcements/rfa09-01.html.

Notices of intent and applications must be submitted through the NASA Solicitation and Proposal Integrated Review and Evaluation System (NSPIRES). Notices of intent are due July 7, 2009, and the application deadline is August 4, 2009.




Posted 06/10/09

Resident & Senior Visiting Researchers
AIMS, Stellenbosch University

Stellenbosch University
African Institute for Mathematical Sciences (AIMS)

Resident Researchers and Senior Visiting Researchers
(Ref. BC/163/05/09)
http://www.aims.ac.za/docs/UNIV_STELLENBOSCH_18163.pdf

The African Institute for Mathematical Sciences (AIMS), located in Muizenberg, Cape Town, is an innovative pan-African centre of excellence for postgraduate teaching and research in the mathematical sciences.

AIMS is currently undergoing very strong growth with the launch of a new Research Centre, focused on applications of mathematics to biology, finance, astrophysics and cosmology, and other fields in the mathematical sciences. Positions for resident researchers are currently available in all the above fields. Senior researchers are also invited to visit AIMS for short periods.

For more information on AIMS and the AIMS Research Centre, Visit http://www.aims.ac.za.

Contract positions for resident researchers for up to three years (with the possibility of renewal, provided funding is available) are offered within appropriate university structures.

Duties:

Requirements:

NOTA BENE: Applications for short-term visits (2 - 6 months) by Senior Visiting Researchers are also invited. Visiting researchers will be able to conduct their own research at AIMS, but will also be expected to participate in the research programmes at AIMS.

Commencement of duties/visit: As soon as possible Closing date: Review of applications will begin on 22 June 2009 and will continue until the positions are filled. Enquiries: Prof. Fritz Hahne on +27 21 787 9332 or fritz@aims.ac.za, or Ms Gudrun Schirge on +27 21 787 9339 or gudrun@aims.ac.za.

The University will consider all applications in terms of its Employment Equity Plan, which acknowledges the need to diversify the demographic composition of the staff corps, especially with regard to the appointment of suitable candidates from the designated groups.

The University reserves the right not to make an appointment.

Your application, comprising a comprehensive curriculum vitae (including research plans in the above or related areas, and the names and contact details of at least three referees), as well as a statement on citizenship and whether a South African work permit is being held, must reach the University before or on the closing date of the advertised post.

Apply online at http://www.sun.ac.za/vacancies. You may also forward your application to The Manager: Personnel Provisioning & Planning, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa, e-mail it to vacancies@sun.ac.za or fax it to +27 21 808 2484. Application forms are obtainable on our homepage at http://www.sun.ac.za/applicationforms, or by e-mailing vacancies@sun.ac.za, or contacting +27 21 808 2753.

Candidates may be subjected to appropriate psychometric testing and other selection instruments.

Should no feedback be received from the University within four weeks of the closing date, kindly accept that your application did not succeed.




Posted 06/10/09

Postdoc Position: Mathematical Modeling Biological Systems
UCI

Institute for Genomics and Bioinformatics
Postdoctoral scholar position

UCI seeks a postdoctoral scholar to undertake an NIH-funded program of collaborative research in mathematical modeling of biological systems. The research program is aimed at developing new mathematical methods for efficient simulation, parameter inference, and model reduction and analysis. The models studied will include stochastic chemical kinetic networks, and their generalization to spatial and multiscale stochastic processes, expressed using rewrite rules that comprise a grammar.

Candidates should have a PhD in a highly quantitative field such as mathematics, physics, or mathematical biology. Experience in biological modeling and strong computational skills are required. Advantageous characteristics include experience in computer algebra, machine learning, computer science, biophysics, and stochastic processes. Expected term of appointment is two years. Candidates will be expected to collaborate with faculty and graduate students, to publish in the scientific literature, and to create distributable open-source software.

Interested applicants should respond no later than the closing date of June 26, 2009 for appointment on July 1, 2009, by forwarding a cover letter, Curriculum Vitae, and the names of three references to:

Professor Eric Mjolsness
Institute for Genomics and Bioinformatics,
Department of Computer Science
University of California, Irvine
Irvine, CA 92697-3435
or via email to emj@uci.edu

The University of California, Irvine is an equal opportunity employer committed to excellence through diversity.




Posted 06/10/09

Postdoc Position: Methodology Development for Metabolomics
Georgetown University

POST-DOCTORAL POSITION at Georgetown University, Department of Biostatistics, Bioinformatics and Biomathematics

The Department of Biostatistics, Bioinformatics and Biomathematics has an open postdoctoral position in methodology development for metabolomics. The successful candidate will be knowledgeable in biostatistical methodology, proficient with statistical programming packages, and possess good oral and written communication skills. Requirements are a PhD Computer Science, Biostatistics/Statistics, Mathematics, or Biomedical Engineering. The position will be for a two year term with an immediate start date.

All qualified candidates should send resume, a list of three references, and cover letter to:

Francoise Seillier-Moiseiwitsch, Ph.D., Chair
Department of Biostatistics, Bioinformatics, and Biomathematics
Georgetown University Medical Center
4000 Reservoir Road, NW
Washington, DC 20057
E-mail: Ms. Laurie Silver - lrs8@georgetown.edu




Posted 06/10/09

Postdoc Position: Cerebellar Network Modeling
OIST

A postdoctoral position is available in the Computational Neuroscience Unit of Dr. Erik De Schutter at the Okinawa Institute of Science and Technology in Japan (http://www.irp.oist.jp/cns/) to study cerebellar function using network modeling. The candidate will contribute to a team effort to build an extensive large-scale network model of the olivocerebellar system using conductance-based neuron models and detailed connectivity (NEURON simulator). Population coding and role of distributed synaptic plasticity will be investigated at multiple levels of the system in the context of different behavioral functions.

Candidates should have experience with single cell or network modeling. There will be ample opportunity to interact with other modelers in the lab who are working on several Purkinje cell and LTD projects and with other scientists at OIST.

We offer attractive financial and working conditions in an English language environment. Duration of initial appointments will be two years, appointments can be extended. More information about the Okinawa Institute of Science and Technology is available at http://www.oist.jp/

Send curriculum vitae, summary of research interests and experience, and the names of three referees to Dr. Erik De Schutter at erik@oist.jp




Posted 06/09/09

Postdoc: Data Analysis
Edmund Mach Foundation

Post-doc in data analysis and modelling of eco-epidemiological system dynamics (Cod. 038_AMB_PDESD)

The research carried out at the Environment Department of Edmund Mach Foundation encompasses both ecological and molecular studies. It focuses on the functional integrity and biodiversity of aquatic (mainly plankton, diatoms and salmonid fishes) and land taxa (mainly vertebrate fauna and their parasites, higher plants including annual species and forest trees) that are subject to anthropic pressure and global climate changes. The ACE-SAP (Alpine Ecosystems in a Changing Environment: Biodiversity Sensitivity and Adaptive Potential) Major Proposal is a collaborative project funded by the Autonomous Province of Trento involving three regional institutions (Edmund Mach Foundation, Natural History Museum of Trento, Civic Museum of Rovereto) and one external partner (University of Davis, California).

Description:
We are seeking a highly motivated and independent individual to carry out a research project on the Data management and analysis; application of statistical methods to the solutions of eco-epidemiological problems; use of advance statistical software packages and development of specific procedure in compatible programming languages; model building, analysis and interpretation, parameter estimation, sensitivity analysis and simulations of different scenarios; drafting scientific papers and reports; attending national and international conferences and workshops.

IT knowledge:
Statistical packages (e.g. R, S-Plus, GenStat); Mathematical software (e.g. Mathematical, Matlab, Maple); Programming languages (e.g. C, Fortran).

More information and application:
http://www.fondazioneedmundmach.it/sperimentazione_context2.jsp?ID_LINK=3419&area=6

Deadline for application:
14th June 2009




Posted 06/09/09

Postdoc Position: Quantitative Biology
University of Michigan

POSTDOCTORAL POSITION: A postdoctoral position in the area of quantitative biology is available in the laboratory of Jennifer Linderman at the University of Michigan in Ann Arbor, MI.

An estimated one-third of the human population is infected with the pathogen Mycobacterium tuberculosis (Mtb). Granulomas are self-organizing collections of immune cells that form in the lungs after inhalation of Mtb; they both contain the infection and provide a niche for bacterial survival. Understanding granuloma formation and maintenance thus provides a key to identifying as well as manipulating factors that lead to different outcomes following infection.

This project involves both experimental work and mathematical modeling to understand how tumor necrosis factor-a and other factors influence granuloma formation and maintenance. The project is part of a multiple-PI (with Kirschner, Kunkel, and Flynn labs) grant to use multi-scale and multi-system approaches to understand tuberculosis and involves integrating data and in silico models.




Posted 06/09/09

Post-Doctoral Associate: Mathematical Biology and Epidemiology
Texas A&M University

We are seeking a creative and enthusiastic candidate with skills and interests in mathematical modeling of biological systems to become involved in one or more projects with Dr. Renata Ivanek at the College of Veterinary Medicine and Biomedical Sciences (http://www.cvm.tamu.edu/vibs/facultydetail.aspx?ID=RIvanek), including:

(i) mathematical modeling of the evolutionary ecology of pathogen traits for intermittent shedding and environmental persistence, and the effect of these traits on pathogen transmissibility fitness.

(ii) mathematical modeling of Salmonella transmission among pigs,

(iii) modeling of spatial-temporal dynamics of Listeria seeligeri in the natural environment,

(iv) development of a method to correct for probe-target dissimilarity in microarray experiments,

(v) mathematical modeling of the evolution of antibiotic resistance in animal versus human populations.

The preferred postdoc should (i) have earned a doctoral degree in mathematics, computer science, physics, statistics, epidemiology or another discipline with strong emphasis on quantitative skills, (ii) have past experience in programming and debugging in one or more object-oriented programming languages and/or in R (R Development Core Team), (iii) have familiarity with applied mathematics (including differential equations, probability theory, and some knowledge of statistics), and (iv) have familiarity with the mathematical representation, treatment and modeling of biological processes. Past experience in building or analyzing models of infectious disease spread and previous work with ecological modeling are desirable but not required.

The postdoc would join a vibrant group of researchers and graduate students within the program of Veterinary Epidemiology and Public Health, in the Department of Veterinary Integrative Biosciences, at the Texas A&M College of Veterinary Medicine and Biomedical Sciences. The College is recognized as a national leader in research, education and service and offers students outstanding opportunities for state of the art research training and collaboration both within the college and throughout the University system.

The position is available immediately. Interested individuals should send their CV with names and contact details of three referees to Dr. Ivanek ( rivanek@cvm.tamu.edu ).




Posted 06/09/09

Postdoc: Dynamics of Layered Biological Systems
California State University LA & CalTech

Joint Postdoctoral Position: California State University, Los Angeles & California Institute of Technology

A postdoctoral position is available immediately to study the dynamics of layered biological systems with specific applications to the ecology of mussel beds. A Ph.D. is required. Candidates should have experience using mathematical modeling and computer simulation to study biological problems. Knowledge of cellular automata and spatial statistics is desired. Opportunities exist to collaborate with field ecologists and to teach. Salary is $42,000/year plus benefits renewable for up to three years. The position is a joint appointment between Cal State LA and Caltech.

Send cover letter, curriculum vitae, and three references to Dr. Robert Desharnais, Biological Sciences, California State University, 5151 State University Drive, Los Angeles, CA 90032. Email: rdeshar@calstatela.edu. Cal State LA UAS is an Affirmative Action/Equal Opportunity Employer.




Posted 06/09/09

Vacancies in Evolutionary Biodemography
Max Planck Institute

The Max Planck Institute for Demographic Research continues to develop its research activities in the field of Evolutionary Biodemography, and is recruiting to a number of positions. Please see the announcement at http://www.demogr.mpg.de/en/jobs/1484.htm that will be appearing soon in Nature, Science etc., and may be of interest to you or to members of your group. Please feel free to distribute this further or to post the text from this e-mail on your web-sites, newsgroups, etc.




Posted 06/09/09

Postdoc position (or PhD studentship) in Optimization
TUG, Austria

Starting on August 1, 2009.

There is an open position for a PhD student or Postdoctoral Fellow within the project:
"The Virtual Heart" embedded in the special research group (SFB) on "Mathematical Optimization and Applications in Biomedical Sciences" hosted at the Karl Franzens University Graz (KFU), the Graz University of Technology (TUG) and the Medical University Graz (MUG).

The SFB incorporates eight interdisciplinary research projects headed by scientists from Applied Mathematics and Medical Engineering. For more details see the project descriptions on the web page http://math.uni-graz.at/mobis/ and http://math.uni-graz.at/mobis/heartjobs.html

Project 1 "Numerical Techniques for the Cardiac Bidomain Equations"
Supervisors: Gernot Plank/Gundolf Haase

For this project we are looking for a candidate holding a masters degree or PhD in either Applied Mathematics/Numerical Mathematics/Scientific Computing or similar disciplines that provide a suitable background for developing methods for the numerical solution of PDEs in a largescale parallel computing context. Although recent advances have led to significant improvements in terms of numerical efficieny, bidomain simulations of entire human hearts remain to be a challenge. The numerical work to be carried out in this PhD project aims to further improve the numerical efficiency of our numerical framework to allow realistic bidomain simulations of the electrical activity in a human heart over several tens of seconds. The candidate should have a general interest in Life Sciences, particularly in cardiac electrophysiology. Reasonable coding skills are expected.

Please send your application by email togernot.plank@meduni-graz.at.

Your email should contain a pdf file as an attachment with the following information:

Curriculum Vitae (CV)




Posted 06/09/09

Chair position in Applied Mathematics
University of Reading, UK

www.reading.ac.uk/maths/about/maths-jobvacancies.asp

Closing date: 10 July 2009

We are seeking an outstanding candidate for a Chair in Applied Mathematics. Mathematics at Reading has an excellent research record in: analysis of differential and integral equations; numerical analysis and computational modelling, including CFD; inverse problems and data assimilation; linear and nonlinear waves; theoretical polymer physics, and other statistical physics; maths of cognitive neuroscience, systems biology, and commerce. It has strong interdisciplinary links, including joint appointments with Meteorology, Biological Sciences, and Advanced Computing and Emerging Technologies, and is a key partner in the Centre for Integrative Neuroscience and Neurodynamics and in the National Centre for Earth Observation.

Candidates should have an international research reputation in an area of mathematics that resonates with our current research activities. Some priority may be given to candidates who can contribute to one or more of: inverse problems and data assimilation; multiscale modelling; nonlinear analysis; continuous or discrete dynamical systems (including stochastic systems) and their numerical simulation; and who can support our existing interdisciplinary interactions. The successful candidate will be expected to make an outstanding contribution to the department's research outputs, to show leadership in the generation of research funding, in the development of the department's teaching portfolio, and in the support of junior staff, researchers and postgraduate students, and to undertake teaching and administrative duties at an appropriate level.

Informal enquiries are welcomed and can be made to
Prof Simon Chandler-Wilde
Head of Department
+44(0)118 3785017
S.N.Chandler-Wilde@reading.ac.uk

Further details and application form:
www.reading.ac.uk/maths/about/maths-jobvacancies.asp




Posted 05/26/09

Postdoc position in Applied Mathematics
Graz University, Austria

The START-Project "Interfaces and Free Boundaries" (directed by M. Hintermueller) hosted at the Karl Franzens University of Graz (Austria) invites applications for a POST-DOC Position in Applied Mathematics.

We are looking for a young scientist holding a PhD in Applied Mathematics or Scientific Computing with specialization in at least one of the fields: large scale or PDE-constrained optimization, variational inequalities, shape or topology optimization, mathematical image processing.

The START-project is based on a scientific award by the Austrian Federal Ministry of Science and Research and it is administered by the Austrian Science Fund FWF. Besides applied mathematics, the START-Project also has a strong component in computational science focusing on the numerical realization of algorithms in various applications. For a more detailed description see the web page http://www.uni-graz.at/imawww/ifb/. Also, the post-doc is invited to cooperate with the special research group on "Mathematical Optimization and Applications in Biomedical Sciences" (http://math.uni-graz.at/mobis/). The initial appointment is for one year, but an extension is possible. The salary follows the rules of the FWF (www.fwf.ac.at).

Please send your application by email tomichael.hintermueller@uni-graz.at. Your email should contain a pdf-file as an attachment with the following information:




Posted 05/20/08

Postdoc Position: Quantitative Biology
Los Alamos National Laboratory

POSTDOCTORAL POSITION: A postdoctoral position in quantitative biology is available immediately. The successful candidate will develop predictive rule-based models for signal-transduction systems in collaboration with theoretical and experimental researchers in the Center for Spatiotemporal Modeling of Cell Signaling, which is comprised of research groups at Los Alamos National Laboratory, the University of New Mexico Cancer Center, and other institutions. The position is a two-year appointment with the possibility of an extension to a third year. Salary starts at $69,800. To apply, send CV and names of three references to Dr. William S. Hlavacek via email (wish@lanl.gov).




Posted 05/20/08

Postdoc Position: Mathematical Oncology
Moffitt Cancer Center

Research position in computational oncology: modeling bio-mechanics of tumor development and treatment

Applications are invited for a postdoctoral research position in the Integrated Mathematical Oncology group at the H. Lee Moffitt Cancer Center& Research Institute in Tampa, Florida.

We are seeking a highly motivated person interested in applying mathematical modeling and computer simulations to study various aspects of tumor initiation, progression and treatment. The appointed candidate will work with Dr. Kasia Rejniak (http://www.rejniak.net) on one of the following projects involving model development and its integration with experimental and/or clinical data: bio-mechanics of normal vs. tumor-like tissue morphogenesis; micro-fluids in drug delivery; bio-physics of tumor microenvironment.

The ideal candidate should have a strong background in computational fluid dynamics and experience in computer programming and visualization. As well as good communications skill and enthusiasm for working in an interdisciplinary team. The working knowledge of one of the following methods: immersed boundary, immersed interface or regularized Stokeslets, will be an asset.

The Integrated Mathematical Oncology (IMO) group is a team of researchers, including mathematicians, computer scientists, imaging specialists, experimental and clinical oncologists, that are interested in developing novel translational approaches to the prevention and cure of cancer.

Position open until filled. For more information and to apply visit http://www.moffitt.org/imo/jobs and send full CV, cover letter, and the names of three potential referees to Dr. Kasia A. Rejniak at Kasia.Rejniak@moffitt.org.




Posted 05/20/08

Fellowship: Applied Mathematics
Imperial College

A 1-year fixed-term Fellowship in Applied Mathematics is available as of October 2009 in the Department of Mathematics, Imperial College, the salary will be £36,670 p.a. to undertake a self-directed program of research. Teaching students at an undergraduate level will be undertaken on courses to be agreed with the Head of Section (but likely to consist of two undergraduate classes, Calculus for Electrical Engineering students and a first-year Matlab course.)

Our preferred method of application is online via the website http://www.imperial.ac.uk/employment (please select "Job Search" then enter the job title or vacancy reference number NS2009058GA into "Keywords"). To apply, please complete and upload an application form as directed, also providing a CV and list of publications.




Posted 04/29/08

Postdoctoral Positions: Cancer Systems Biology
Tufts University

Postdoctoral Positions: Cancer Systems Biology, Caritas St. Elizabeth's Medical Center, Tufts University

The Center of Cancer Systems Biology at Caritas St. Elizabeth's Medical Center, Tufts University School of Medicine, seeks motivated individuals who are interested in modeling aspects of cancer development and therapeutic response, including angiogenesis, inter-tissue interactions, gene network logic, DNA damage and matrix remodeling. Of particular importance is the establishment of biomathematical tumor models and simulation platforms upon which hypotheses related to tumor growth dynamics may be studied. Opportunity for in vitro and animal experimentation is available. The successful candidate, seasoned in mathematical analysis or radiation biology/physics, will join a team of well-established cancer biologists, molecular biologists, clinicians and mathematicians at the Center.

Two-year positions are available immediately, renewable upon performance. Opportunity exists for advancement to faculty level. Preferred candidates will be PhDs who are familiar with partial differential equation, numerical simulation and/or discrete or stochastic algorithmic approaches to modeling dynamical phenomena in biology. Background in the issues related to tumor development, tumor risk, clinical therapeutic control strategies, radiation response, radiation risk, digitized imaging or gene network modeling theory a plus.

For further information please visit:
http://www.cancer-systems-biology.org

Please submit a letter of intent, curriculum vitae and the names and addresses of two references to:

Dr. Philip J. Hahnfeldt
Center of Cancer Systems Biology
Caritas St. Elizabeth's Medical Center
Tufts University School of Medicine
736 Cambridge St., CBR-115
Boston, MA 02135-2997
Tel: 617-789-2998
Fax: 617-779-6572
Email: Philip.Hahnfeldt [at] tufts.edu

Caritas St. Elizabeth's Medical Center is an Affirmative Action/Equal Opportunity Employer.




Posted 04/22/08

Computational Biologist
Noblis

Noblis, in Falls Church, VA, is a science, technology and strategy organization that helps clients solve complex systems, process and infrastructure problems in ways that benefit the public. You will find Noblis at work in many fields, including national and homeland security. Our unique impartial, independent stance - free of any ties to commercial or sponsor interests - assures clients that our counsel and implementation support is offered purely in their best interest.

We are seeking a Computational Biologist to work within our multidisciplinary team of scientists and engineers to address informatics, mathematical and computational challenges in the life sciences. You will analyze, characterize and solve complex problems with your informatics and computational skills. You will analyze data, simulate and model processes and systems, develop algorithms, and write code to solve critical challenges in our nation's security and intelligence programs.

Requirements:

Applicants selected will be subject to a government security investigation and must meet eligibility requirements for access to classified information.

Interested candidates should apply online at https://jobs-noblis.icims.com/jobs/2203/job.




Posted 04/21/08

Permanent Post: Mathematical Modelling
Health Protection Agency

Job Reference: 919-CFI-MK-1334290
Job Title: Mathematical Modeller
Employer: Health Protection Agency
Department: Statistics, Modelling and Bioinformatics
Location: Colindale
Salary: £48,514-£58,970 pa

Job Type: Permanent
Closing Date: 28/04/2009
Interview Date: 15/05/2009

The Health Protection Agency (HPA) is an independent body that protects the health and well-being of everyone in England and Wales. The Agency plays a critical role in protecting people from infectious diseases and in preventing harm when hazards involving chemicals, poisons or radiation occur. We also prepare for new and emerging threats, such as a bio-terrorist attack or a virulent new strain of pathogen.

We are looking for a mathematical modeller to lead the development and application of mathematical models of infection transmission within the Modelling and Economics Unit, specifically within the area of vaccine preventable diseases. The post holder is expected to work collaboratively with epidemiologists and microbiologists in the HPA and outside, and with modellers at academic institutions, to build the appropriate theoretical framework for optimising decisions on national disease control policy and surveillance infrastructure. They are also required to identify and secure the grant funding necessary to increase the capacity for mathematical modelling at CfI.

The post-holder will be based in the Modelling and Economics Unit at the Centre for Infections in Colindale, which is a dynamic and stimulating group comprising infectious disease modellers and health economists working on diverse projects relating to the burden of infectious disease and modelling the impact of interventions against infections. He/she should have a postgraduate degree in a relevant discipline, extensive postgraduate experience, and experience of computer programming and mathematical modelling of communicable disease transmission. Applicants should have an internationally-recognized track record of research and have experience of supervising scientific staff. They must have good inter-personal skills and be able to communicate clearly and succinctly with a non-technical audience, collaborate across scientific disciplines, work with initiative and independence, work as a team leader/member, and maintain required levels of confidentiality.

The Centre for Infections at Colindale, NW London is an internationally renowned centre of excellence for expertise, reference and research, surveillance and epidemiology in relation to micro-organisms that affect human health. The modern purpose built centre is well equipped and staffed and provides excellent Library, Occupational Health and Refectory facilities. There is also a Nursery and Gym on Site.

PLEASE NOTE: Shortlisting details and interview arrangements will be communicated via email therefore please ensure you check your Emails/NHS jobs accounts regularly following the closing date.

If you would like to talk to somebody about this vacancy then please contact Dr Peter White (email: peter.white@hpa.org.uk)

To apply, visit:
http://www.jobs.nhs.uk/cgi-bin/vacdetails.cgi?selection=912232707




Posted 04/21/08

Postdoctoral Position: Computational Systems Biology
Rice University

Postdoctoral Position in Computational Systems Biology and Bioengineering is available in the laboratory of Prof. Igoshin in the Dept of Bioengineering at Rice University. In our research we use computational and theoretical tools of engineering to study microbiological systems. We are recruiting one postdoctoral researcher to work on statistical image analysis and quantification of the dynamic biofilms formed by Myxobacteria.

PROJECT BACKGROUD:
In recent years the ubiquity of microbial communities in nature has become apparent: for instance, most bacteria related to human diseases are associated with biofilms. However, it is still not clear how individual cells self-organize in these communities and how community as a whole responds to environmental cues. This project aims to discover the mechanisms of self-organization in dynamic single-species biofilms (swarms). In these swarms, bacteria display collective surface motility, cooperatively sense the environment, execute collective developmental programs and often differentiate into distinct cell types performing specialized functions. This research focuses on self-organization in spreading or aggregating biofilms formed by Myxococcus xanthus - an important model organism for studying microbial cooperation, development, and collective motility.

The main project for this position would be to determine quantitative pattern descriptions (features) that describe biofilm phenotypes and distinguish mutant strains from wild-type strains. We will analyze the spreading and aggregation phenotype of biofilms formed by various mutant strains. Subsequently, we will use the information to find a set of quantitative features (pattern descriptions, order parameters) that comprehensively characterize given biofilm phenotypes.


RESPONSIBILITIES:
The postdoctoral fellow will be responsible for the image quantification and data analysis based on available biological data of our collaborators. Statistical quantification and processing of experimental data (time-lapse microscopy images) will be primary computational techniques. Furthermore, statistical analysis techniques like clustering, factor analysis and PCA would be used to quantify the distinction between the mutant strains. The research will be conducted in tight collaboration with experimental colleagues and the main results are at least partially expected to be published in biological journals.


QUALIFICATIONS:
PhD in science or engineering is required for this position. Candidates are required to have experience in mathematical and computational modeling or statistical analysis of biological images as well as some knowledge of basic biology. Candidates with publications in the field of mathematical/computational biology are strongly preferred. Previous experience in statistics, image processing computational biophysics, mathematical biology, or bioinformatics is a plus. Strong interest in interdisciplinary collaboration and English proficiency are also expected.


ABOUT RICE AND HOUSTON:
Rice is consistently ranked as one of the nation's best teaching and research universities. It is a member institution of the world largest Medical Center (TMC). The Department of Bioengineering is consistently ranked among the nation's top 10 bioengineering graduate programs. Rice is situated in the Museum district of Houston, TX - forth largest city in the US.


CONDITIONS:
Rice University is committed to affirmative action and equal opportunity employer and offers competitive postdoctoral salary and benefits. The position is open from July 1, 2009 until filled. The initial appointment is for 1 year with possible continuation for the second year upon satisfactory performance. Please visit http://igoshin.rice.edu/ or contact Prof. Igoshin for more information. Applicants should submit their resume and letter stating their research interests to igoshin@rice.edu




Posted 04/21/08

Postdoctoral Position: PBPK Modeling
PNNL, Richland, WA

Post Doctoral Position in PBPK Modeling
Pacific Northwest National Laboratory, Richland, WA, USA

A postdoctoral position is available in PBPK modeling at the Pacific Northwest National Laboratory (PNNL). Funding for this position is available through one of several research programs related to development and application of PBPK/PD models for research design, biomonitoring and risk assessment.

The successful candidate will have a strong background in mathematics and statistics, including some exposure to Bayesian methods and have developed PBPK/PD models. A background in biochemistry, mammalian physiology or related field strong preferred. Important skills most relevant to these projects include: a) familiarity with basic PK and PBPK modeling tools such as ACSL, Simusolv, Matlab, etc.; b) experience with variability analysis using Monte Carlo methods; c) understanding of Bayesian/MCMC methods for PBPK model calibration and variability analysis; d) modeling binding equilibria. Other relevant experiences will be considered.

Due to the collaborative and interdisciplinary nature of this project, strong communication skills and ability to work both independently as well as in a group setting with collaborators and other. Demonstrated evidence of the ability to lead as well as contribute to and author peer-reviewed publications is expected. Candidates must have received a Ph.D. in toxicology, pharmacology / pharmacokinetics, bioengineering, mathematics / statistics or similar discipline within the last 5 years.

Apply on-line at www.jobs.pnl.gov and reference job ID # 116965. Interested applicants should also send a cover letter, CV, and three references to:

Justin Teeguarden, Ph.D., DABT
Pacific Northwest National Laboratory
Biological Monitoring and Modeling Group
P.O. Box 999, MSIN P7-59
Richland, WA 99352




Posted 04/21/08

Research Position: Neural Network Modeling
University of Antwerp

The Theoretical Neurobiology group (http://www.tnb.ua.ac.be) at the University of Antwerp, Belgium seeks a researcher specialized in neural network modeling to work at the Belgian National Neuroinformatics Node of the INCF (http://www.incf.org). Preference is given to postdocs but experienced PhD candidates will also be considered.

The researcher will combine modeling of cerebellar networks (supervisor Prof. E. De Schutter) or cortical networks (supervisor Prof. M. Giugliano) with the development of an ontology of terms relevant for network models consisting of spiking neurons. The ontology work contributes to the INCF Task Force for a Standard Language in Neural Network Modeling. In addition the researcher will help organizing the Belgian neuroinformatics community.

Candidates should have experience in integrate-and-fire neural network modeling and have good English language conversation and writing skills. Being able to communicate in Dutch is a plus.

The appointment will be for a duration of 2-3 years at the University of Antwerp, Belgium and involve travel to Task Force meetings. Standard university salary scale based on highest degree, position is supported by FWO Flanders and by INCF. Appointment can start anytime and preferentially by summer 2009.

For further information or application (with full CV): contact Prof. E. De Schutter at erik@tnb.ua.ac.be




Posted 04/14/09

Lectureship & Postdoc Positions
University of Dundee

5-year Tenure Track Lectureship in Mathematical Biology

Following the recent award of a European Research Council Advanced Investigator Grant to Professor Mark Chaplain, FRSE ("From Mutations to Metastases: Multiscale Mathematical Modelling of Cancer Growth and Spread"), and a recent appointment to a Chair in Mathematical Biology in the Division, the University seeks to appoint a suitably qualified outstanding candidate to a 5 year tenure-track lectureship in Mathematical Biology. Subject to suitable performance, the position will be made permanent after the initial 5-year period. The Division has a long-standing history of research excellence in Mathematical Biology which it seeks to maintain and develop through this appointment, specifically in the area of cancer modelling. The successful candidate should therefore have an established research reputation in Mathematical Biology (preferably in cancer modelling) and show an enthusiasm for inter-disciplinary research, especially at the Life and Medical Sciences Interface.

Start date: 1st September 2009

The position will shortly be advertised formally (jobs.ac.uk)



Three 5-year Post-doctoral Research Assistants in Mathematical Biology

Following the recent award of a European Research Council Advanced Investigator Grant to Professor Mark Chaplain, FRSE ("From Mutations to Metastases: Multiscale Mathematical Modelling of Cancer Growth and Spread"), the University seeks to appoint three suitably qualified candidates to three 5-year Post-doctoral Research Assistant positions in Mathematical Biology. Each position will involve inter-disciplinary research on an aspect of cancer modelling. The Division has a long-standing history of research excellence in Mathematical Biology which it seeks to maintain and develop through these appointments. The successful candidates will join a current cancer modelling group of one post-doctoral research assistant and four PhD students. An additional three PhD students will join the group in September 2009, with a further three post-doctoral research assistants joining in 2010, following substantial investment in a new Chair in Mathematical Biology. The successful candidates should have a PhD in Applied Mathematics or cognate discipline (e.g. theoretical physics) and preferably have already undertaken research in some area of Mathematical Biology (ideally cancer modelling) and show an enthusiasm for inter-disciplinary research, especially at the Life and Medical Sciences Interface.

Start date: 1st September 2009

The positions will shortly be advertised formally (jobs.ac.uk)

Informal approaches concerning these positions may be made to:

Prof. Mark Chaplain, FRSE
Head of Division
Division of Mathematics
University of Dundee
Dundee DD1 4HN
Scotland
email: chaplain@maths.dundee.ac.uk
tel: 01382 385369
fax: 01382 385516




Posted 04/14/09

Postdoc: Modeling Infectious Diseases
University of Georgia

We are seeking candidates with skills and interests in mathematical modeling of biological systems to become involved in one or more ongoing infectious disease projects with Dr Andrew Park at the Odum School of Ecology, including:

Funding (plus health and retirement benefits) is available for 18 months, with the possibility of extension. Applicants should email a statement of interest, CV, and arrange to have 3 letters of recommendation sent to Dr Park (awpark@uga.edu). Applications received before 10 May 2009 will be reviewed and the position can be taken up from July 2009, or later.

The University of Georgia is an equal opportunity, affirmative action employer.




Posted 04/14/09

Postdoc: Modeling Immune System
New York University Med School

Research position in mathematical modeling and computer simulation of the immune system.

New York University School of Medicine is seeking a highly qualified Postdoc research fellow/research scientist with an interest in applying mathematical modeling and computer simulation to study the immune system. Ideal candidates should have a Ph.D in applied mathematics, computer science or computational biology. Advanced graduate students in New York City area may also be considered. Experience in computer programming (C/C++, PERL, Matlab/R) is required. Knowledge of immunology is desirable. Additional research about the group can be found from the website:
http://immsimteam.med.nyu.edu.

Interested candidates are encouraged to apply as soon as possible. Send your cover letter and curriculum vitae to fc15@nyumc.org or chengy04@nyu.edu with the subject "Researcher Position in IMMSIM". Two references will be requested."




Posted 04/14/09

Positions: Biological Modeling and Simulation
NCSB, Amsterdam

Positions in biological modeling and simulation in Amsterdam, The Netherlands

Within the Netherlands Consortium for Systems Biology (NCSB), biologists, computer scientists, physicists and mathematicians of Dutch universities and research institutes have joint forces to develop innovative systems biology approaches for tackling challenging, multi-factorial biological problems related to human health, plant sciences, and white biotechnology.

Computer modeling and simulation are central to this highly multidisciplinary effort. NCSB's core modeling group Biomodeling and Biosystems Analysis at CWI, the Dutch national research institute for mathematics and computer science, develops innovative simulation approaches and coordinates modeling projects at the participating institutes.

The Biomodeling and Biosystems Analysis group invites applications for the following positions:

Postdoctoral researcher:
Modeling dynamics and evolution of hierarchically regulated, eukaryotic gene networks
See: http://www.cwi.nl/en/node/1044

PhD student:
Cell-based modeling of blood vessel formation
See: http://www.cwi.nl/en/node/1045

Scientific programmer / PhD student:
Bringing modeling and simulation to the biologist's lab bench
See: http://www.cwi.nl/en/node/1043

Requirements for all positions:

Information:
For full description of these positions, see http://www.cwi.nl/en/jobs. For more information about CWI, NISB, NCSB and the Biomodeling and Biosystems Analysis group, visit http://www.cwi.nl, http://www.sysbio.nl, and http://www.cwi.nl/~merks.

Contact: Roeland Merks, CWI, Roeland.Merks@sysbio.nl, Tel. +31-20-5624117

Application deadline is May 1st, 2009.




Posted 04/14/09

Postdoc & PhD Positions: Systems Biology
IFOM, Milan

Fellowships for both PostDocs and PhD positions are available to work in the computational cell biology lab of Andrea Ciliberto in IFOM, Milan (http://www.ifom-ieo-campus.it/research/ciliberto.php). The lab is interested to study molecular regulatory networks with a combination of mathematical tools and molecular biology techniques. The project concerns the mechanisms of regulation of the cell division cycle with particular emphasis on the control of chromosome segregation (see Simonetta et al, The influence of dimerization in Mad2 activation dynamics, PLoS Biology 7(1): e1000010, 2009). Candidates are expected to do wet lab work (single cell live imaging, development of stable transgenic cell lines) and computational studies (with systems of ordinary differential equations).

Candidates with a background in systems biology physics, chemistry, chemical engineering, are particularly encouraged to apply. Knowledge of differential equations, image analysis, molecular biology techniques is a plus.

PhD candidates will have to apply to the selections of the European School of Molecular Medicine (www.semm.it) to be held next fall in Milan. If interested, please contact Andrea Ciliberto (andrea.ciliberto@ifom-ieo-campus.it).




Posted 04/14/09

Postdoc Positions: Evolutionary Biology
Umea University

Two post-doc positions (2 years) in evolutionary biology

Umea University, Department of Ecology and Environmental Science, Sweden

The role of climate change for the evolution of biodiversity The aim of the project is to understand how climate change affects evolution and the global distribution of species. The earth is subject to recurrent and rapid climate shifts at various time-scales, but the consequences of this has not been incorporated into models of evolution. In the project, models of past climate change are combined with phylogenetic data to address how diversification of species and spatial patterns in genetic divergence within species are affected by climate variability.

Position 1 investigates the role of climate variability for the diversification of species. Data on past climate change from climate models are used together with phylogenies from a range of taxa to test for an association between climate variability and species diversification.

Position 2 tests how climatic variability affects the degree of genetic divergence among populations. Data on levels of genetic divergence among populations are combined with data on past climate change from climate models to test for a correlation between genetic divergence and climatic stability, both within species (in cases where climatic stability varies across its geographic range) and between species inhabiting regions differing in climatic stability.

For further information and guide on how to apply, see http://www8.umu.se/umu/aktuellt/arkiv/lediga_tjanster/315-301-09.html , or contact Roland Jansson (roland.jansson@emg.umu.se, www.emg.umu.se/roland)

Last day for application is May 31, 2009.




Posted 04/13/09

Research Computational Biologist
Animal and Natural Resources Institute

DESCRIPTION OF DUTIES:
The position is located in the Environmental and Food Microbial Safety Laboratory Animal and Natural Resources Institute, Beltsville, MD. The incumbent will characterize genome-level differences between zoonotic bacterial isolates from dairy cattle; will use existing methods or develop new technologies to interpret bacterial genomic data that is generated using high-throughput DNA sequencing technologies.

QUALIFICATION REQUIREMENTS:
Recent Ph.D. in Computational Biology (Bioinformatics), Molecular Biology, Microbiology or closely related fields is required. Knowledge and understanding of standard bioinformatics methods, tools, and databases, and skill in computer programming is desirable.

CITIZENSHIP RESTRICTIONS APPLY:
Applicants must clearly indicate in their resume/CV their country of citizenship. To be employed as a Postdoctoral Research Associate with ARS, applicants must be a citizen from a country listed on the following link: http://www.afm.ars.usda.gov/hrd/jobs/VISA/countries.htm

INFORMATION ON APPLICATION PROCEDURES FOR POSTDOCTORAL POSITIONS is available at:
http://www.afm.ars.usda.gov/divisions/hrd/hrdhomepage/vacancy/pd962.html

INFORMATION ON EMPLOYEE BENEFITS is available at:
http://www.usajobs.opm.gov/ei61.asp

FOR SPECIFIC INFORMATION ON THE DUTIES AND RESPONSIBILITIES OF THIS POSITION OR TO SUBMIT AN APPLICATION, CONTACT"

Dr. Jo Ann S. Van Kessel
USDA/ARS/ANRI/EMFSL
Building 173, Room 202
10300 Baltimore Avenue
Beltsville, MD 20705
Phone: 301-504-8287
Fax: 301-504-6608
Email: joann.vankessel@ars.usda.gov




Posted 04/08/09

Scientist III
Division of Space Life Sciences, USRA

Universities Space Research Association (USRA), a non-profit consortium of universities, has an immediate opening for a Scientist III position in its Division of Space Life Sciences (DSLS). The incumbent is expected to perform general research duties in applied and clinical research in the field of pharmacology using basic scientific concepts and applications in human research. The incumbent will provide scientific leadership and focus for the Pharmacology Laboratory at NASA Johnson Space Center in Houston and will assist with the development of operational and clinical research relative to space flight physiology. This is a full-time appointment in which the incumbent will be expected to develop, design, and implement comprehensive pharmacology research activities including: grant proposal writing/submissions, peer review, study implementation, data collection, data management (analysis and archiving) as well as manuscript development and publication while insuring compliance with Institutional Review Board for Human Subject Protection principles and test subject privacy. This role will include significant interaction with international partners for the International Space Station as well as participation in NASA and NSBRI sponsored nutritional biochemistry activities. The successful candidate must be a citizen of the United States.

Applicants must have a Ph.D. in Pharmacology or closely related discipline and a minimum of two years of pharmacology research experience with documented publications in peer-reviewed journals. Experience in developing peer reviewed applied and clinical research protocols, with knowledge and experience in human pharmacology, and its relation to basic physiology concepts and applications, biomedical ethics, and test subject safety principles is critically important. Experience with data management and statistical analysis is highly desired, along with knowledge of specialized computer software relevant to scientific research activities. Excellent written and oral communication skills are required.

USRA Point of Contact:
Adrian LeBlanc, PhD
Director, Division of Space Life Sciences
3600 Bay Area Boulevard
Houston, TX 77058
Email:leblanc@dsls.usra.edu
Tel:(281)244-2012




Posted 04/06/09

Research Jobs
NIH

Director Division of Epidemiology Statistics and Prevention Research, NICHD
(deadline: April 30)

The Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) seeks a Director of the Division of Epidemiology, Statistics and Prevention Research (DESPR), an Intramural Program of the Institute. This is a challenging, high profile position with national influence in maternal and child health and requires an individual willing to serve in a prominent leadership role. In addition, the Director functions as a consultant and catalyst for other NICHD activities in the intramural program, extramural program and as advisor to the NICHD Director. The mission of the Division is to conduct research and support research training in the fields of biostatistics, epidemiology, reproduction, child health, maternal health, and prevention. The Division's current research portfolio includes studies on biostatistics methodology; epidemiology of human fecundity and fertility; pregnancy complications and adverse pregnancy outcomes; infant mortality; prevention of childhood injuries; pediatric infectious diseases, and behavioral research in health promotion and disease prevention.

The successful candidate will have an M.D. or Ph.D. degree, or both, with appropriate expertise and an established track record of accomplishments in scientific research and analysis, leadership, administration, multidisciplinary team projects and consultation as requirements. The Director, DESPR, will report to the Director, NICHD, and will plan, develop, organize, implement, and direct a technically complex research program, while providing intellectual leadership and mentorship to tenured and tenure-track scientists and trainees. The successful candidate will be offered a competitive salary and benefits package commensurate with experience and qualifications. Appointee must be a U.S. citizen or a resident or non-resident alien with a valid employment visa.

Applications must be received by April 30, 2009. Please send a letter describing your scientific background and interests, relevant administrative, collaborative and leadership experience and curriculum vitae to: Steven Hirschfeld, MD PhD; Associate Director for Clinical Research; Eunice Kennedy Shriver National Institute of Child Health and Human Development;

31 Center Drive, Room 2A03; Bethesda, Maryland 20892. HHS and NIH are Equal Opportunity Employers. Applications from women, minorities and persons with disabilities are strongly encouraged.



Tenure Track/Tenure Investigator Positions in
Systems Immunology and Infectious Disease Modeling
National Institute of Allergy and Infectious Diseases
National Institutes of Health
Department of Health & Human Services
(deadline: May 1)

The National Institute of Allergy and Infectious Diseases (NIAID), Division of Intramural Research (DIR) is seeking several outstanding individuals for its new Program in Systems Immunology and Infectious Disease Modeling PSIIM.

Modern technology allows the deep analysis of biological systems at multiple levels - from intracellular signaling networks, to individual cell behavior, to the functioning of a tissue, organ, and even the whole organism. The challenge is not only to collect the large amounts of data these technologies can generate, but also to organize it in a manner that enhances our understanding of how such systems operate. To do this, it is necessary to develop quantitative models that can be used to predict behavior of these complex systems. Achieving this goal requires an interdisciplinary effort and for this reason the PSIIM is organized as an integrated team of scientists and support staff. Within the PSIIM, there will be groups with expertise in the areas of computational biology, bioinformatics, proteomics, genomics, cell biology, immunology, and infectious diseases. These groups will have access to the latest technology for gene expression profiling, high content screening of RNAi libraries for the discovery of pathway components, imaging tools, genomic and proteomic analysis, cores for the genetic manipulation of animals, and a substantial computer infrastructure. They will also have access to BSL3 facilities for working with infectious agents of high priority for human health and biodefense. Although the PSIIM has been established within NIAID and has an immune / infectious disease focus, it is also expected to play a major role in fostering the growth of systems biology efforts throughout the NIH and involving diverse biomedical areas. PSIIM staff will be expected to interact extensively with investigators in other components of the NIH intramural research program, including but not limited to the National Center for Biotechnology Information (NCBI), NIH Chemical Genomics Center (NCGC), Center for Information Technology (CIT), and Center for Human Immunology (CHI), all of which have activities emphasizing systems and informatic approaches to biomedicine.

Current groups in the PSIIM include Computational Biology - Modeling and Simulation, Molecular / Cell Biology - High-throughput screening, Proteomics, and Immunology. The PSIIM is now recruiting for tenure-track or tenure level team leader appointments in the following areas:

Bioinformatics / Biostatistics: the incumbent will lead a group focused on developing and implementing computational tools and statistical methods for the analysis of large scale genomic, proteomic, and cell biological datasets. The ideal candidate will have a strong background in statistics, mathematics, programming, and modeling biological systems as well as a strong interest in collaboration with experimentalists to enable elucidation of biological mechanisms through application of informatic methods, including construction of networks suitable for predictive analysis. The group will include expertise in statistics, software development (C++, Java, Perl, SQL etc.), knowledge of existing and emerging bioinformatic tools, databases and algorithms, and experience with heterogeneous computer environments.

Genomics: The incumbent will be responsible for applying and, when necessary, developing novel methods for the systems-wide analysis of such issues as transcription factor and epigenetic control of gene expression, quantitative measurement of gene expression, and the role of non-coding regions and small RNAs in regulating gene/gene product expression patterns. The PSIIM is especially interested in recruiting an individual with a strong interest in the application of these methods to the study of gene regulatory circuits and to the integration of information on cell signaling events, developmental state, and such gene regulatory circuits into comprehensive models of the control of cellular differentiation, for example, of effector CD4+ T cells or iPS.

These positions and the research activities they conduct are fully funded by the intramural research program of NIAID. Each team leader is expected to build a working group consisting of postdoctoral fellows, students, technicians, and staff scientists. The team leaders will work with the Program Director to help set the goals for the PSIIM and to determine how best to reach these goals as an integrated group. To ensure appropriate career trajectories for those joining the PSIIM team effort, the NIH has modified its tenure policies to take specific account of contributions made in such a team science setting. Members of the PSIIM will be expected to play a major role in development of an integrated computational systems approach to biology, the application of these methods to questions of substantial biomedical importance, and the dissemination of the tools and techniques developed in the PSIIM across the NIH intramural program and in the extramural academic and industrial spheres. Applicants should be seeking a difficult challenge in which creativity, technical expertise, and a strong desire to achieve in a team setting will be critical for success.

Interested candidates may contact Dr. Ronald Germain, Program Director, PSIIM, DIR, NIAID at 301/496-1904 or email rgermain@niaid.nih.gov for additional information about these positions.

Applicants must have a Ph.D., M.D., or an equivalent degree in a relevant field with extensive post-doctoral experience, and a strong publication record demonstrating potential for creative research. To apply, submit your curriculum vitae, bibliography, and a detailed statement of how your expertise can contribute to the success of the PSIIM program, to Wanda Jackson at NIAID.DIR.Search@niaid.nih.gov. In addition, three letters of reference must be sent directly from the referee to Dr. Robert Hohman, Chair, NIAID Search Committee, c/o Wanda Jackson at NIAID.DIR.Search@niaid.nih.gov or 10 Center Drive, MSC 1356, Building 10, Room 4A22, Bethesda, Maryland 20892-1356. Email is preferred. Completed applications MUST be received by May 1, 2009.

See further information regarding DIR laboratories and working at NIAID. Please visit NIAID systems biology program for more information.



Staff Scientist (Biostatistician)
Clinical Sciences Section, NIAMS
(deadline: May 31)

The Clinical Sciences Section (CSS) in the Office of the Clinical Director, National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS) is recruiting for a Biostatistician. Research in the CSS is in the broad areas of clinical epidemiology and health services research. The CSS focuses on studies of health outcomes of patients with rheumatic diseases. This is accomplished using observational studies, clinical trials, and analyses of large administrative datasets.

The successful candidate will be expected to be skilled in statistical computing, the application of statistics in epidemiology, longitudinal data analysis, and the analysis of clinical trials. He/she will be responsible for assisting in the development of analytic plans with investigators in the CSS, performing analyses, and assisting in reporting results. He/she will have the opportunity to conduct independent methodological research. In addition, the candidate will provide guidance on data quality issues, serve as ad hoc statistical consultant for investigators in the Office of the Clinical Director, and provide mentoring for clinical fellows. The ideal candidate will have a doctoral degree in statistics, health services research, economics or a related field. A record of peer-reviewed publications in one of these fields is required. Experience with programming using common statistical software is expected. Prior experience analyzing large administrative datasets would be advantageous. The successful candidate should have strong communication skills and the ability to work collaboratively. Applications will be evaluated on demonstrated ability to analyze epidemiologic and clinical trial data and to collaborate effectively.

Salary will be commensurate with experience. A full package of benefits, including retirement, health, life, and long-term care insurance, and a Thrift Savings Plan is available. Interested individuals should send a cover letter, curriculum vitae, a brief summary of research experience, accomplishments and research interests and goals, copies of three publications or reprints, and three letters of reference electronically to Ms. Leonie Daley at daleyl@mail.nih.gov or mailed to the address below by May 31, 2009: Dr. Michael Ward; Clinical Sciences Section (CSS); Office of the Clinical Director; Intramural Research Program, NIAMS; c/o Ms. Leonie Daley; 31 Center Drive; Bldg 31, Room 4C-12 MSC 2350; Bethesda, Maryland 20892-2350. DHHS and NIH are Equal Opportunity Employers. The NIH is dedicated to building a diverse community in its training and employment programs.




Posted 04/06/09

Postdoctoral Fellow: Biomathematics
University of Rochester School of Medicine and Dentistry

Department of Biostatistics and Computational Biology, University of Rochester School of Medicine and Dentistry has an immediate opening for one postdoctoral fellow position in biomathematical modeling. The potential candidates are expected to have a strong background in applied mathematics or engineering (Ph.D. required), especially in differential equations, agent-based models or stochastic models.

Preference will be given to the candidate with experience in mathematical modeling of biomedical systems (in particular, immunology and infectious diseases modeling). The successful candidate is expected to collaborate with immunologists and virologists to develop mathematical models for immune response to viral infection based on immunological experiment data. Experience in computer simulations, numerical analysis and statistics is a plus. Good communication skills and computing techniques are essential. The position requires close collaboration with immunologists, statisticians, and computer software developers to develop immune response modeling and simulation systems. The scientific environment is conducive to professional development. For an experienced candidate, it is possible to be appointed as a research faculty.

Please send CV, three references and other supporting materials to:

Dr. Hulin Wu,
C/O: Ms. Debra Perno (Job Code: Math)
Department of Biostatistics and Computational Biology,
University of Rochester School of Medicine and Dentistry,
601 Elmwood Avenue, Box 630,
Rochester, NY 14642.

Email: debra_perno@urmc.rochester.edu




Posted 04/06/09

Postdoc Position: Computational & Systems Neuroscience
Cornell

The Computational Physiology Laboratory (CPL) at Cornell University is seeking a full-time postdoctoral research scholar interested in theoretical models of sensory processing, with emphases on olfactory systems, perceptual learning, and neuromodulation. The CPL is an interdisciplinary environment in which theoretical models are developed to integrate experimental approaches ranging from cellular and in vivo electrophysiology to behavioral measurements of the top-down regulation of perceptual processes.

The successful candidate will be an experienced experimental and/or computational neuroscientist. Responsibilities will include NEURON programming of biophysically constrained neuronal and network models of the olfactory system, as well as opportunities to be trained in and use a variety of computational and experimental techniques. The ability to work across multiple levels of analysis is particularly valuable.

Please submit an application package including your complete CV, a statement of research interests, reprints of (or links to) your most important scientific publications with a brief statement explaining the importance of each and your specific intellectual and practical role in the work, and contact information for references. Please send your application package electronically to both Thomas Cleland (tac29@cornell.edu) and Christiane Linster (CL243@cornell.edu). If electronic transmission is not possible, please mail application to this address: Thomas Cleland, Dept. Psychology, Cornell University, Ithaca, NY 14853, USA. Please feel free to contact us for more information.




Posted 04/06/09

Postdoc Position: Complex Microbial Populations
University of Guelph

We invite applications for the position of a postdoctoral researcher in a research project on modeling complex microbial populations.

The successful candidate will have a PhD in Biomathematics or Bioprocess Engineering (including wastewater/waste engineering, food process engineering, biochemical engineering, etc), or a related discipline. Ideally the incumbent has been working in an area of complex populations and/or mixed-culture microbial population dynamics before.

This is an interinstitutional and interdisciplinary project involving university and government researchers. Therefore, demonstrated evidence of prior interdisciplinary experience is an asset.

The position will be held at the Dept. of Mathematics and Statistics of the University of Guelph, a research intensive comprehensive university with a unique tradition in the Life Sciences. The Biomathematics and Statistics working group is the biggest research area in the department, the Computational Biomathematics Laboratory (in which this position will be housed) is the biggest research group in the Department.

Applicants should send their CV and the contact details of at least two academic references to:

Dr. Hermann J Eberl
Associate Professor and Canada Research Chair
Dept. Mathematics and Statistics
University of Guelph

Applications should be made by preference electronically, in PS or PDF format, to heberl@uoguelph.ca.

Applications will be considered on an ongoing basis until the position filled. Informal enquiries can be directed to the same email address.




Posted 04/06/09

Postdoctoral Positions
Fields-CMM, University of Toronto

The Centre of Mathematical Medicine (CMM) hosted at the Fields Institute, Toronto, invites applications for candidates for a number of CMM-Fields postdoctoral fellowships to commence July 1, 2009 or a negotiable date thereafter. http://www.fields.utoronto.ca/programs/scientific/CMM/

We are looking for individuals who would strengthen current interdisciplinary activity at the Centre. While positions are open to all areas of mathematical medicine and biology, preference will be given to those individuals with research interests in the current principal areas of CMM focus: mathematical oncology, computational neuroscience, and biomechanics of soft tissues or bioinformatics. In particular, we are looking for individuals interested in collaborative interaction with clinicians and experimentalists.

The fellowships provide for a period of engagement in research and participation in the activities of the Centre. They may be offered in conjunction with partner universities. List on the cover sheet of the application if there are any faculty members at universities affiliated with the Fields Institute who you believe are appropriate.

To guarantee consideration postdoctoral applications should be received by June 1, 2009. (NOTE late applications will be accepted until the positions are filled). Applicants must apply through https://www.mathjobs.org/jobs/Fields/1632.

Eligibility:
Qualified candidates who will have a recent PhD in any of these areas, or a related area of the mathematical sciences are encouraged to apply.

The Fields Institute is strongly committed to diversity within its community and especially welcomes applications from visible minority group members, women, Aboriginal persons, persons with disabilities, members of sexual minority groups, and others who may contribute to the further diversification of ideas.




Posted 04/06/09

Postdoctoral Positions
Mathematical Sciences Institutes

We would like to bring to your attention that about 30 new postdoctoral positions are likely to become available soon, pending support by the NSF. The seven NSF funded Mathematical Sciences Institutes invite applications for these positions.

Persons who have received a PhD from a U.S. institution in the mathematical and statistical sciences within the last 5 years and who do not have employment for the Fall of 2009 are requested to apply online at:
http://www.mathinstitutes.org/institutespostdoc/




Posted 04/06/09

Postdoctoral Position
CIGENE, Norwegian University of Life Sciences

The Centre for Integrative Genetics (CIGENE), hosted by the Norwegian University of Life Sciences (UMB), is now inviting applications for a postdoctoral fellowship (see: http://www.cigene.no).

Postdoctoral fellowship - Multiscale modelling of the ageing heart

CIGENE is currently inviting applications for a limited-term 28-month postdoc position for pioneering the modelling of the ageing heart. This will be an exciting project aimed at representing how the ageing process affects heart function within the strongly established framework of the international Physiome project. The work will be focused on pioneering the integration of mathematical representations of ageing processes in single cells and tissues with advanced multiscale models of the mammalian heart.

For details please see:
http://www.cigene.no/vacancies/52-current-vacancies/217-postdoctoral-fellowship-multiscale-modelling-of-the-ageing-heart.html




Posted 04/03/09

1 staff Scientist and 3 Postdoc Positions
NHLBI

Click here for information.




Posted 03/16/09

Junior Researcher
CRS4, Sardinia, Italy

CRS4 (Center for Advanced Studies, Research and Development in Sardinia) Italy-Sardinia-Pula Junior Researcher in Computational Systems Biology

Position: Junior Researcher in Computational Systems Biology, 2-years renewable contract.

The Bioinformatics Laboratory of CRS4 (Center for Advanced Studies, Research and Development in Sardinia) has a Junior Researcher position available to work in the area of Computational Systems Biology in the RAGNO Group (Reverse-engineering and Analysis of Genome scale NetwOrks). The position will be in either one of two main projects of the group.

Project 1: The Junior Researcher will be part of an ongoing project with focus on analysis of gene expression data in context of large scale Protein Signaling Networks. The aim is to discover dys-regulated signaling modules in cancers and neurological diseases, and discovery of general principles of gene expression (dys-)regulation of signaling systems. The suitable candidate has a PhD, expertise in statistical analysis of gene-expression data and programming in R, and experience or strong interest in systems biology and complex network analysis.

Project 2: The Junior Researcher will be the part of an ongoing project with focus on analysis of Genetical Genomics data (gene expression and genotyping). The Junior Researcher will work on a data simulator aiming to generate Genetical Genomics data using large network models with non-linear ordinary differential equations. This project combines numerical analysis, complex network science and genetics. The suitable candidate has a PhD, expertise in programming with Fortran/C++, Matlab and numerical methods, and experience or strong interest in systems biology and complex network analysis.

CRS4, established in the Sardinian Technological Park located in Pula (Ca), Italy, is an interdisciplinary research laboratory with focus on computational biology since 2006. CRS4 Bioinformatica currently harbors several groups that carry out fundamental research, develop computational tools and provide educational services for bio-medical research, in particular for personalized medicine. Our research activities are tightly integrated with an experimental laboratory providing exceptional facilities for high-throughput analysis. More than 20 people representing a wide range of expertise and experience in bioinformatics and related scientific disciplines are currently working in independent research groups fostering top quality interdisciplinary research.

CRS4 Bioinformatica
Alberto de la Fuente
http://www.bioinformatica.crs4.org/research/ragno-group

How To Apply:
Interested candidates are encouraged to apply as soon as possible. Send your cover letter, curriculum vitae, list of publications and the names of at least two references to job_bioinfo@crs4.it. Please send all documents in pdf format and use as subject line "Junior Researcher in Computational Systems Biology".




Posted 03/16/09

Postdoc Position
RICAM, Linz, Austria

Postdoc Position f/m at the Optimization and Optimal Control Group

At the Johann Radon Institute for Computational and Applied Mathematics (RICAM) of the Austrian Academy of Sciences, Linz, Austria

The "Scientific computing - Optimization and Optimal Control Group" is searching a PostDoc with a strong background in partial differential equations, variational problems, or scientific computing. The research focus will be adjusted according to the interests of the successful candidate, but knowledge in optimal control or optimization is especially welcome.

A doctorate in mathematics or a closely related field is required. The working language is English. The initial contract can be for up to three years, a renewal for three more years is possible depending on achievements. For more information contact Prof. K. Kunisch at: karl.kunisch@uni-graz.at.

RICAM is a research institute which went into operation in 2003, and has built up to a total of 30 PostDoc positions in eight areas:

The institute is housed on the campus of the Johannes Kepler University in Linz, a town of about 240.000 on the Danube, very close to the Austrian Alps, and half-way between Vienna and Salzburg. Further information is available under: http://www.ricam.oeaw.ac.at.

Applications with personal and scientific data, copies of relevant documents and a statement about scientific interests and achievements should be sent, preferably by email, to karl.kunisch@uni-graz.at.

Postal address:
Prof. Dr. Karl Kunisch
Institute for Mathematics and Scientific Computing,
University of Graz
Heinrichstrasse 36
A-8010 Graz, Austria.

The Austrian Academy of Sciences is an equal opportunity employer.




Posted 03/16/09

Sr. Bioinformatics Analyst
Lockheed Martin

We are currently searching for an experienced Sr. Bioinformatics Analyst to support the National Institutes of Health (NIH). This opportunity is a permanent, full-time position with Lockheed Martin and it is on-site at the NIH in Bethesda/Rockville, MD.

Major Duties and Responsibilities:
The ideal candidate with bioinformatics expertise will work closely with NIH scientists to provide customized solutions for a broad variety of biological experiments in the subject areas of immunology and infectious diseases. He/she will assist with interpreting data generated by highly parallel detection systems used in genomics and proteomics and will work with technologies for genomics investigations such as transcriptome and micro-RNA profiling, ChIP-chip and novel array applications.

Position Requirements:




Posted 03/10/09

Postdoctoral Researcher
ZBSA, University of Freiburg

Postdoctoral Researcher at the Institute of Biological Systems Analysis (ZBSA), University of Freiburg, Germany

Trichome patterning in Arabidopsis Thaliana

Trichomes are shoot epidermal hairs found in most plants. The functions ascribed to trichomes range from protecting the plant against insect herbivores to reducing transpiration. They are regularly distributed over the epidermis. This makes them an ideal candidate for the study of spatial control of specific cell types in plants, since these structures arise by an orchestrated interplay of many different components. In this joint project together with an experimental group in Cologne we try to understand the initiation of the trichome pattern using detailed information about the molecular interactions. To this end we mainly employ non-linear partial differential equations or, in a discrete formulation, systems of coupled non-linear ordinary differential equations. Due to the complexity of the equations one has in most cases to revert to numerical methods. In this collaboration we have a very intense interaction between theory and experiment. We are looking for someone who wishes to work theoretically but in close collaboration with biologists.

Profile:
Candidates ideally fulfill the following criteria:

Direct requests for information or applications:
Dr. Christian Fleck
Center for Biological Systems Analysis
University of Freiburg
Habsburgerstrasse 49
79104 Freiburg, Germany
Tel: ++49-(0)761-203-97198
Email: Christian.Fleck@fdm.uni-freiburg.de
Web: http://www.fdm.uni-freiburg.de/~cfleck/

Applications should include a motivation letter, a curriculum vitae, list of publications, and the names and addresses of two persons that can be approached to obtain further information.




Posted 03/10/09

Postdoc: Quantitative Biology
Georgia Tech

A postdoctoral position in quantitative biology is available under the direction of Prof. Joshua Weitz (Biology, Georgia Tech). The postdoc will join an interdisciplinary research group of biologists, physicists, and computational scientists. The postdoc will collaborate on research focusing on viral dynamics and evolution, at the molecular and ecological scales, as well as have the opportunity to develop new projects at the interface of integrative biology, bioinformatics & dynamical systems.

The position, starting in August 2009, provides competitive salaries and benefits and will be based in the School of Biology. The initial appointment is for one year, with renewal up to three years subject to satisfactory progress and mutual agreement. The start date is flexible.

REQUIREMENTS: (1) PhD in computational biology, physics, mathematics, microbiology, ecology or related area; (2) Demonstrated research excellence; (3) Strong quantitative skills; (4) Strong oral and written communication skills. Ideal candidates from the biological sciences should have experience with scientific programming. Ideal candidates from the physical/mathematical sciences should have prior exposure to research in the biological sciences. However, outstanding applicants looking to broaden their field of interest will also be considered.

TO APPLY: Applications should be emailed to <jsweitz@gatech.edu> and consist of (1) a cover letter describing your interest in the position, (2) the names and contact information for three references, (3) a curriculum vita (including publications). Applications will be reviewed starting from March 15, 2009, and continue until the position is filled.

ABOUT THE GROUP: The Weitz group is supported by grants from the Burroughs Wellcome Fund, the James F. McDonnell Foundation, DARPA, and the National Science Foundation. For more information, consult the Weitz group website: http://ecotheory.biology.gatech.edu or contact Joshua Weitz: jsweitz (at) gatech.edu.




Posted 03/10/09

Postdoc Position
University of Graz, Austria

The following opening is expected:
Post-Doctoral Position

Institute for Mathematics and Scientific Computing
Karl-Franzens-University of Graz, Austria

Applications are invited for a 1-year postdoctoral Research Position at the Institute for Mathematics and Scientific Computing of the University of Graz, Austria. There is the possibility of extension to at least the end of April 2011.

The position is related to the SFB Research Center "Mathematical Optimization and Applications in Biomedical Sciences" located at the University of Graz, the Graz University of Technology and the Medical University Graz, see http://math.uni-graz.at/mobis/.

We are looking for an ambitious researcher with programming skills holding a doctoral degree in Applied Mathematics or Scientific Computing with distinct interests in inverse problems and continuous optimal control. The salary follows the rules of FWF - Austrian National Science Foundation (approximate gross salary EUR 54.000,- / year).

Your application should contain the following information:

For further details, please contact:

Prof. Dr. Karl Kunisch
Institute of Mathematics and Scientific Computing
University of Graz
Heinrichstrasse 36
A-8010 Graz, Austria
Tel.: + 43 316 380 5162
Fax: + 43 316 380 9815
Email: karl.kunisch@uni-graz.at




Posted 03/10/09

Lectureship in Computational Mathematics
Durham University, UK

Durham University, UK
Department of Mathematical Sciences
Lectureship in Computational Mathematics
Salary: £29704 - £35,469 per ann

Closing date: Monday 6th April 2009

Applications are invited for a two-year temporary Lectureship in Computational Mathematics, from September 2009. You must have, or be about to complete, a PhD in a relevant area of Classical Applied Mathematics, in particular Computational Applied Mathematics, Partial Differential Equations, Continuum Mechanics, Fluid Mechanics, Applied Analysis, Numerical Analysis, Mathematical Biology or Mathematical Finance. The post will carry a reduced teaching load, and the holder will be encouraged to develop their research profile.

For the job description and further particulars see:
www.jobs.ac.uk/jobs/YB873/

For informal enquiries contact Professor Brian Straughan <brian.straughan@durham.ac.uk>




Posted 03/10/09

Faculty Positions
KAUST, Saudi Arabia

King Abdullah University of Science and Technology (KAUST) Faculty Openings in Computer Science and Applied Mathematics

King Abdullah University of Science and Technology (KAUST) is being established in Saudi Arabia as an international graduate-level research university dedicated to inspiring a new age of scientific achievement that will benefit the region and the world. As an independent and merit-based institution and one of the best endowed universities in the world, KAUST intends to become a major new contributor to the global network of collaborative research. It will enable researchers from around the globe to work together to solve challenging scientific and technological problems. The admission of students, the appointment, promotion and retention of faculty and staff, and all the educational, administrative and other activities of the University shall be conducted on the basis of equality, without regard to race, color, religion or gender.

KAUST is located on the Red Sea at Thuwal (80km north of Jeddah). Opening in September 2009, KAUST welcomes exceptional researchers, faculty and students from around the world. To be competitive, KAUST will offer very attractive base salaries and a wide range of benefits. Further information about KAUST can be found at http://www.kaust.edu.sa/.

KAUST invites applications for faculty position at all ranks (Assistant, Associate, Full) in Applied Mathematics (with domain applications in the modeling of biological, physical, engineering, and financial systems) and Computer Science, including areas such as Computational Mathematics, High- Performance Scientific Computing, Operations Research, Optimization, Probability, Statistics, Computer Systems, Software Engineering, Algorithms and Computing Theory, Artificial Intelligence, Graphics, Databases, Human- Computer Interaction, Computer Vision and Perception, Robotics, and Bio-Informatics (this list is not exhaustive). KAUST is also interested in applicants doing research at the interface of Computer Science and Applied Mathematics with other science and engineering disciplines. High priority will be given to the overall originality and promise of the candidate’s work rather than the candidate’s sub-area of specialization within Applied Mathematics and Computer Science.

An earned Ph.D. in Applied Mathematics, Computer Science, Computational Mathematics, Computational Science and Engineering, Operations Research, Statistics, or a related field, evidence of the ability to pursue a program of research, and a strong commitment to graduate teaching are required. A successful candidate will be expected to teach courses at the graduate level and to build and lead a team of graduate students in Master's and Ph.D. research.

Applications should be submitted in a pdf format and include a curriculum vita, brief statements of research and teaching interests, and the names of at least 3 references for an Assistant Professor position, 6 references for an Associate Professor position, and 9 references for a Full Professor position. Candidates are requested to ask references to send their letters directly to the search committee. Applications and letters should be sent via electronic mail to kaust-search@cs.stanford.edu. The review of applications will begin immediately, and applicants are strongly encouraged to submit applications as soon as possible; however, applications will continue to be accepted until December 2009, or all 10 available positions have been filled.

In 2008 and 2009, as part of an Academic Excellence Alliance agreement between KAUST and Stanford University, the KAUST faculty search committee consisting of professors from the Computer Science Department and the Institute of Computational and Mathematical Engineering at Stanford University, will evaluate applicants for the faculty positions at KAUST. However, KAUST will be responsible for all hiring decisions, appointment offers, recruiting, and explanations of employment benefits. The recruited faculty will be employed by KAUST, not by Stanford. Faculty members in Applied Mathematics and Computer Science recruited by KAUST before September 2009 will be hosted at Stanford University as Visiting Fellows until KAUST opens in September 2009.




Posted 03/09/09

Post Doctoral Fellow in Bioinformatics
National Cancer Institute

POSITION DESCRIPTION:
Will use statistical analysis, data mining approaches, and gene/protein functional annotation software packages within the Laboratory of Bioinformatics and Immunopathogenesis (http://david.abcc.ncifcrf.gov/). Will work in a highly dynamic team environment in support of a diverse array of genomic studies in collaboration with laboratory and clinical investigators from the National Institute of Allergy and Infectious Disease (NIAID) at NIH. Will interact closely with world-class bioinformatics analysts, molecular biologists, immunologists, statisticians and computer programmers at NIH community.

REQUIRED SKILLS:
Doctorate degree from an accredited college/university in a discipline related to biomedical research. New Ph.D. graduates are encouraged to apply. Some training or knowledge in one or more of the following areas: SNP microarray; Exon Microarray; and Promoter microarray (ChIP-on-CHIP). Ability of learning to work on large dataset (genome-wide scanning data) in a combination of Linux/UNIX/windows environment with bioinformatics tools (such as, PLINK, R/BioConductor, Partek, NCBI databases). Entry or middle level of programming languages such as Perl, Python, Java, C++, etc.

DESIRED SKILLS:
Good communication skills.

BENEFITS (Final explanations up to HR):
Competitive compensation rate in a government research environment; 401K Match; Flexible expense accounts; Medical insurance; Tuition fee support; Meeting travel; Free parking; Generous vacation leave;

LOCATION:
National Cancer Institute at Frederick, MD

RELOCATION SUPPORT:
Yes

VISA SPONSORHSIP:
Yes

PROMOTION OPPORTUNITY:
Possibility to be promoted to a permanent bioinformatics analyst position upon performance review and other conditions.

CONTACT:
zhengxin@mail.nih.gov




Posted 03/05/09

Fellowship
U.S. Food and Drug Administration

The FDA has now started accepting applications for the second class of the FDA Commissioner's Fellowship Program. The fellowship program combines rigorous didactic coursework with the development of a hypothesis-driven, regulatory science research project.

The application deadline is April 15th and the 2-year program start date will be October 5th.

Applicants must be U.S. Citizens, non-citizen nationals of the U.S., or have been admitted to the U.S. for permanent residence before the program start date.

http://www.fda.gov/commissionersfellowships/default.htm




Posted 03/05/09

Postdoc Researcher: Biomathematics/Simulation Modeling
Stanford

Stanford University is seeking a highly qualified post-doctoral fellow or research scientist with an interest in applying mathematical modeling to the study of cancer biology and clinical cancer outcomes. The ideal candidate should have a Ph.D. in a field related to quantitative modeling (biomathematics, applied mathematics, operations research, biostatistics) or a field that includes training in statistical modeling (health-outcomes research, epidemiology, or computational biology). Experience in stochastic simulation modeling, numerical optimization and parameter estimation, and computer programming (C/C++, Matlab, R/Splus) is critical. Knowledge of cancer epidemiology and cancer biology is desirable. Excellent verbal and written communication skills are key.

Applicants should submit a cover letter, CV and 3 references to Sylvia Plevritis, PhD, Department of Radiology, Stanford University via email: plevriti@stanford.edu, with subject line "Researcher in Biomathematics/Simulation Modeling."

Stanford University is an affirmative action, equal opportunity employer.




Posted 03/05/09

Postdoc: Discrete Mathematical Biology
Georgia Tech

Biomathematics Postdoctoral Position
Georgia Institute of Technology

A postdoctoral position in discrete mathematical biology is available under the direction of Prof. Christine Heitsch (Mathematics, Georgia Tech). The biomath postdoc will work with an interdisciplinary RNA research group of faculty and graduate students from mathematics, biology, and computer science. The postdoc will collaborate on research focusing on the combinatorics of RNA folding, and have the opportunity to develop new projects at the interface of discrete mathematics and molecular biology.

The position, starting in August 2009, is supported by an NIH R01 and Georgia Tech with a salary of $50,000 and standard benefits. The postdoc will be based in the School of Mathematics and have limited teaching responsibilities of one course per semester. The initial appointment will be for one year, with renewal up to three years subject to satisfactory progress and mutual agreement.

Requirements include: (1) PhD in mathematics, statistics, computer science, or other closely related field; (2) Demonstrated research excellence; (3) Strong oral and written communication skills. Prior interdisciplinary experience is preferred, but outstanding applicants looking to broaden their field of interest will also be considered.

Applications should be emailed to <appRNApostdoc@math.gatech.edu> and consist of a cover letter describing your interest in the position, the names and contact information for at least three references, a curriculum vita, and a short research summary.

Applications will be reviewed starting from March 15, 2009, and continue until the position is filled.




Posted 02/23/09

Faculty Position: Applied & Computational Mathematics
University College Dublin

University College Dublin is seeking to appoint a Lecturer in Applied and Computational Mathematics in the School of Mathematical Sciences.

UCD School of Mathematical Sciences is committed to research and teaching across the mathematical sciences, including mathematics, applied and computational mathematics, and statistics and actuarial science, and their connections with other fields. The advertised position concerns the discipline of applied and computational mathematics.

The successful candidate will be expected to engage in research in some aspect of Applied and Computational Mathematics, including supervision of research students and projects, and to contribute to the School's wide-ranging programme of undergraduate and postgraduate teaching. Applications from excellent candidates with interests in all areas of Applied and Computational Mathematics will be considered.

Salary: 37,411 - 87,724 pa (95 Lecturer Scale)

Appointment on scale will be made commensurate with qualification and experience
NOTE: Applications must be submitted by the closing date and time specified (04 March 2009) UCD are unable to accept late applications.

http://www.ucd.ie/vacancies




Posted 02/23/09

Postdoc position in Mathematical Biology
UAB

A Postdoctoral fellow position is available immediately for candidates interested in mathematical biology/biophysics/complex systems.

Appointment will be for two years, with possible extension conditioned on funding. Salary is commensurate with qualifications and in general follows or exceeds NIH postdoctoral stipends guideline.

The research will focus on the multi-scale complex system that regulates glucose homeostasis, a basic physiological process that provides energy to all cells in human body. The position involves the development and application of mathematical and computational methods for the study of the biological system across different spatial and temporal scales. For insulin release from pancreatic islets, both ODE and PDE systems will be used to study the synchronization, pattern formation, wave front propagation and noise-induced orders in the islet, which can be modeled as a network of coupled non-linear oscillators (the beta cells, as well as other islet cells). From the results derive the emergent properties and the mathematical models of beta-cell function. Higher levels will include the investigation of autocrine and paracrine regulation, the communication and signaling between multiple organs (pancreas, liver, muscle, brain, etc), and the dynamics of glucose/insulin in blood circulation.

Research will be conducted in the research group of Xujing Wang (http://www.phys.uab.edu/xwang) in the Department of Physics and the Comprehensive Diabetes Center (http://diabetes.dom.uab.edu), at the University of Alabama at Birmingham (UAB).

There will be ample opportunity to interact with a team of interdisciplinary investigators that includes mathematical biologist, theoretical physicist, applied mathematician, biochemist, as well as clinician and surgeon. Due to the interdisciplinary nature of the research, candidates with PhD training from all quantitative basic science areas will be considered. Experience in applied mathematics, biophysics, computational modeling, scientific programming and simulation, are highly desirable.

Application should consist of a one-page statement of research interest, names of three references, a CV with publication record and/or thesis topic. Please submit the application to: xujingw@uab.edu. (205) 934-8186.

Both the physics department and the comprehensive diabetes center at UAB have developed a strong record of extramurally funded interdisciplinary research, and have extensive collaboration with many other department and research centers.

UAB is an Equal Opportunity/Affirmative Action employer. UAB offers competitive benefit, more information can be found at http://www.postdocs.uab.edu/.




Posted 02/17/09

Bioinformatics Scientist
Northrop Grumman Corporation

Northrop Grumman Corporation, Information Systems Sector is looking for a bioinformatics scientist to contribute to the continued development of the Immunology Portal and Analysis Database, ImmPort (www.immport.org).

The ImmPort system hosts a data warehouse of research and clinical data created by researchers extramurally funded by the Division of Allergy Immunology and Transplantation (DAIT) in the National Institute of Allergy and Infectious Diseases (NIAID). ImmPort provides researchers worldwide with the latest technologies in data searching, data visualization, and data analysis open source tools and processes. In addition, imported data to the data warehouse goes through data standardization, quality control, data curation and ontologies mapping processes.

The candidate should be a MS or PhD graduate in Bioinformatics (or another related life science) with specific experience in comparative genomics and SNP genotyping data and the tools that would be applied to the analysis of these data types. General working knowledge of Immunology is very helpful and desired. The candidate would work with the technical team to validate and test the functioning of the ImmPort web application and other complex scientific applications, as well as provide functional requirements and specifications to technical staff based on advanced knowledge of the scientific domain.

The work location will be in Rockville, MD with an easy access from/to the I-270 corridor. This is a full time staff position.

Northrop Grumman is an equal opportunity employer that offers competitive salaries and an industry leading benefit package that includes education assistance.

If there is someone who might be interested in applying to this position, or if further information is needed, please contact:

Mike Atassi
Senior Program Manager
Northrop Grumman Corporation
2101 Gaither Road Mail Stop 600
Rockville MD 20850 USA
Office: +1 301 527 6655




Posted 02/17/09

Postdoctoral Fellow
Norwegian University of Life Sciences

The Centre for Integrative Genetics (CIGENE), hosted by the Norwegian University of Life Sciences (UMB), is now inviting people to express their interest for a postdoctoral fellowships - Multiscale modelling of the ageing heart (see: http://www.cigene.no).

A 28 month postdoc position for pioneering the modelling of the ageing heart is likely to be announced soon. This will be an exciting project aimed at representing how the ageing process affects heart function within the strongly established framework of the international Physiome project. The work will be focused on pioneering the integration of mathematical representations of ageing processes in single cells and tissues with advanced multiscale models of the mammalian heart.

The candidate will join a collaborative team led by Peter Hunter, Bioengineering Institute, University of Auckland, Tom Kirkwood, Newcastle University and Stig W Omholt, Centre for Integrative Genetics, Norwegian University of Life Sciences.

The candidate will be formally affiliated with the Norwegian University of Life Sciences, but must be willing to stay for extensive periods in Auckland and Newcastle. Ideally, the candidate will have a strong background in mathematical modelling of biological systems and a good understanding of cell biology and physiology. However, proven talent and documented willingness to acquire new skills can compensate for gaps in formal qualifications.

If you are interested in this position, please send an email to stig.omholt@umb.no with your CV and mark it "Physiome/ageing".




Posted 02/17/09

Postdoctoral Fellow: Mathematical Biology
University of Alabama at Birmingham (UAB)

A postdoctoral fellow position is available immediately for candidates interested in mathematical biology/biophysics/complex systems. Appointment will be for two years, with possible extension conditioned on funding. Salary is commensurate with qualifications and in general follows or exceeds NIH postdoctoral stipends guideline.

The research will focus on the multi-scale complex system that regulates glucose homeostasis, a basic physiological process that provides energy to all cells in human body. The position involves the development and application of mathematical and computational methods for the study of the biological system across different spatial and temporal scales. For insulin release from pancreatic islets, both ODE and PDE systems will be used to study the synchronization, pattern formation, wave front propagation and noise-induced orders in the islet, which can be modeled as a network of coupled non-linear oscillators (the beta cells, as well as other islet cells). From the results derive the emergent properties and the mathematical models of beta-cell function. Higher levels will include the investigation of autocrine and paracrine regulation, the communication and signaling between multiple organs (pancreas, liver, muscle, brain, etc), and the dynamics of glucose/insulin in blood circulation. Research will be conducted in the research group of Xujing Wang (http://www.phys.uab.edu/xwang) in the Department of Physics and the Comprehensive Diabetes Center (http://diabetes.dom.uab.edu), at the University of Alabama at Birmingham (UAB). There will be ample opportunity to interact with a team of interdisciplinary investigators that includes mathematical biologist, theoretical physicist, applied mathematician, biochemist, as well as clinician and surgeon.

Due to the interdisciplinary nature of the research, candidates with PhD training from all quantitative basic science areas will be considered. Experience in applied mathematics, biophysics, computational modeling, scientific programming and simulation, are highly desirable. Application should consist of a one-page statement of research interest, names of three references, a CV with publication record and/or thesis topic. Please submit the application to: mailto:xujingw@uab.edu. (205) 934-8186.

Both the physics department and the comprehensive diabetes center at UAB have developed a strong record of extramurally funded interdisciplinary research, and have extensive collaboration with many other department and research centers. UAB is an Equal Opportunity/Affirmative Action employer. UAB offers competitive benefit, more information can be found at http://www.postdocs.uab.edu/.




Posted 02/17/09

Postdoctoral Fellow: Mathematical Epidemiology
The University of Miami

Applications are invited for a postdoctoral fellow position, starting date flexible (Summer/Fall 2009), in Mathematical Epidemiology in the Department of Mathematics at the University of Miami, Coral Gables, Florida, USA. The goal of this interdisciplinary project, funded by the National Institute of General Medical Sciences/NIH, is to integrate individual-patient data with mathematical modeling to provide population-level analysis of the spread of antimicrobial-resistant bacteria (ARB) in hospital settings. The one-year position (renewable for a second year) will focus on development of mathematical models applied to characterize the superspreaders of antimicrobial-resistant bacteria, the subgroup of patients responsible for the majority of ARB spread. It will also involve developing theory relating to the transmission dynamics and persistence of antimicrobial-resistant bacteria (ARB) in hospital settings.

Applicants should hold a PhD in Applied Mathematics or a related field with strong modeling, analytic, computational, or statistical skills. Previous experience in the modeling and analysis of ecological/epidemiological systems, or previous collaborations with experimentalists (biologists, ecologists or epidemiologists) will be preferred. Salary is in the range of $35,000-40,000 per year (depending on experience) plus fringe benefits.

For further information, please contact Dr. Shigui Ruan (ruan@math.miami.edu). Applicants should send a detailed CV, together with a cover letter stating your research interests and three reference letters to Dr. Shigui Ruan, Department of Mathematics, University of Miami, Coral Gables, FL 33124-4250, USA. Electronic applications are encouraged. Review of applications will start immediately and will continue until the positions have been filled.




Posted 02/17/09

Funded Studentship in Numerical Analysis
NUI Galway

Applications are invited for a Masters by Research in Mathematics at NUI Galway.

The goal of the project is to design and implement numerical methods for systems on nonlinear equations that model patient response to certain drugs in the setting of an Intensive Case Unit.

Starting: September 2009

Funding: Fees plus 17,000 pa for up to 18 months (funded by Science Foundation Ireland)

Requirements: Good primary degree (equivalent to H1 or H2.1) in Mathematics or a related discipline.

Deadline: 3rd July 2009.

For more details, contact Dr Niall Madden (Niall.Madden@NUIGalway.ie), or see http://www.maths.nuigalway.ie/~niall/Research/MSc_DrugDeliver.shtml




Posted 02/17/09

Lecturer/Associate Professor
University of Nottingham

University of Nottingham
Lecturer/Associate Professor in Applied Mathematics
School of Mathematical Sciences

Applications are invited from outstanding candidates at any stage of their academic career.

The Unit of Assessment for Applied Mathematics at the University of Nottingham was ranked 5th nationally by Research Power in the 2008 RAE and the successful candidate will be expected to contribute to maintaining and enhancing our research record. The Division of Applied Mathematics is particularly interested in receiving applications from candidates with research interests in scientific computing or numerical analysis, but applications are welcome from any candidate whose research complements current activity within the Division. The successful candidate will have opportunities to collaborate with existing research groups working in areas that include industrial mathematics, continuum mechanics and mathematical biology, in order to build on and expand existing activity within these areas.

Candidates for appointment at Associate Professor level should have achieved research distinction in applied mathematics, have proven leadership capability or potential and proven skills in high quality teaching.

Salary, depending on qualifications and experience, will be within the range:

This post is available from 1 September 2009 or as soon as possible thereafter and is open to job share.

Informal enquiries may be addressed to Professor J Billingham, tel: 0115 951 3846, fax: 0115 951 3837 or Email: John.Billingham@Nottingham.ac.uk. Information about the School is available at: http://www.maths.nottingham.ac.uk.

For more details and/or to apply on-line please access: http://jobs.nottingham.ac.uk/CE29619S. If you are unable to apply on-line please contact the Human Resources Department, tel: 0115 951 3262 or fax: 0115 951 5205. Please quote ref. CE/29619S.

Closing date: 13 March 2009.

Please indicate clearly which level of post you are applying for.

For all our vacancies and more about working at the University of Nottingham see: http://jobs.nottingham.ac.uk/




Posted 02/11/09

Lecturer: Sport and Exercise Biomechanics
University of Leeds

University of Leeds
Institute of Membrane and Systems Biology
Centre for Sport and Exercise Sciences

Lecturer (Research and Teaching) Biomechanics

Applications are sought from outstanding individuals to enhance our research activities in sports & exercise sciences. The primary criterion for appointment will be academic excellence.

You will play important roles in delivering the University of Leeds' vision to remain one of the world's leading universities by conducting research of importance to society and contributing to the development of outstanding graduates and scholars. Attractive recruitment packages will be offered to high-calibre candidates, subject to qualifications and experience. The start dates are negotiable, although successful candidates should be in post by September 2009

Applications are encouraged from candidates with a clinical and/or non clinical background with a proven ability to deliver internationally excellent research and teaching in biomechanics in relation to exercise, health and rehabilitation.

Salary: Grade 8 (£36,532 - £43,622) p.a.

Apply using: Application form, CV and Equal Opportunities Monitoring form. Download an application form: pdf version: http://www.leeds.ac.uk/hr/forms/recruitment/app_form.pdf Word version: http://www.leeds.ac.uk/hr/forms/recruitment/newapplicationform.doc

Informal enquiries:
Professor Jim Deuchars, Director of the Institute of Membrane and Systems Biology, tel +44 (0)113 343 4249, email j.deuchars@leeds.ac.uk, or Dr Andrea Utley, Director of the Centre for Sports and Exercise Sciences, tel +44 (0) 113 343 5087, email a.utley@leeds.ac.uk.

Send completed applications to:
Mr Alex Bateman, email a.bateman@leeds.ac.uk or by post to:
Faculty Recruitment Office
Room 7.14
Miall Building
University of Leeds
Leeds
LS2 9JT

Closing date: 27 February 2009




Posted 02/11/09

Postdoctoral Research: Computational Biology
Microsoft Research

Post-Doctoral Research opportunities in Computational Biology
Microsoft Research
Cambridge, England

The Microsoft Research Computational Biology Group is seeking to hire outstanding post-doctoral scientists to undertake research in the following areas:

Immunology, Neuroscience, Developmental Biology (especially stem cell research and organogenesis), Cell cycle. The emphasis of the Group is on research, development and application of novel computational methods and tools to enable realistic, comprehensive, multi-scale modelling, analysis, synthesis and visualization of complex biological systems, with the aim of breaking through existing barriers to fundamental advances in understanding how living things work. Our research focuses on understanding system behavior as a whole, and we are particularly interested in candidates with the ability and the desire to contribute to the development and/or application in the areas above of the functional unit at the centre of our overall modeling efforts: a fully programmable `in-silico' cell.

The Computational Biology Group is part of Microsoft's Computational Science Laboratory, which is well resourced, has a sister group in computational ecology, and benefits from links to a software and tools team with whom we aim to develop useable, freely available software for use by the scientific community. The positions offer an opportunity to join a young and expanding laboratory with an exciting and ambitious research agenda, which encourages strong interdisciplinary research through collaborations with computer scientists, theoretical and experimental biologists and biochemists. Candidates would be encouraged and expected to develop such collaborations further with other leading research groups to carry out novel scientific research, and to publish this research in international peer-reviewed scientific journals, in addition to engaging with the mission of the group more widely.

Candidates should have a background in computer science, engineering, maths or physics and have applied their work in biological modelling; or a background in theoretical, experimental or computational biology and be able to demonstrate the necessary computational or mathematical expertise.

Positions are for 2 years and offer very competitive packages. To apply, please send a letter of application, research statement, curriculum vitae, and at least three letters of reference to Hayley North, Computational Science Laboratory Administrator:

hayleyn@microsoft.com

Deadline for applications is 1st March 2009 and all interviews will take place before 31st March. Additional information about the group can be found at http://research.microsoft.com/biology




Posted 02/11/09

Postdoctoral Researcher: Modelling/Statistical Inference
University of London

Post-doctoral researcher in the application of statistical inference and mathematical modelling to biological problems (3 yrs)

The Mathematical Biology Group of Royal Holloway, University of London is seeking to appoint a research assistant for 36 months in the area of mathematical/statistical modelling. The appointment is made as a part of a BBSRC funded programme to investigate how can we rationally choose mathematical models for biological systems, and how we can study these models, and their behaviour and quantify their value in explaining experimental data. This project, which will run in parallel with sister projects at the University of Glasgow and Imperial College London, will analyse a number of biological exemplar projects and will develop models and confront these with data in order to develop tools and methodology for the qualitative and quantitative analysis of mathematical models. Candidates to be considered will have a background in statistics and/or mathematical modelling and an affinity towards Biology.

The starting salary will be £31,838 per year, inclusive of London Allowance. We expect successful candidates to start between April and October 2009. Further details on the research project can be found on http://mathbio.bl.rhul.ac.uk/vacancies.

Informal enquiries may be made to Professor Vincent Jansen, tel. 01784 443179, or e-mail vincent.jansen@rhul.ac.uk.

Details how to apply can be found on http://www.rhul.ac.uk/personnel/Ads/X0109-5241.html. Please note that to apply you will need to fill out an application form as well as send your CV to the Human Resources Department, Royal Holloway, University of London, Egham, Surrey, TW20 0EX; fax: 01784 473527; tel: (++) 44 1784 414241 (or use email address recruitment@rhul.ac.uk and quote the reference number X0109/5241.

The closing date for receipt of applications will be midday 5 March 2009.

We positively welcome applications from all sections of the community.




Posted 02/09/09

Bioinformatics Data Analyst
NIH/NHGRI

The Intramural Research Program of the National Human Genome Research Institute, National Institutes of Health (Bethesda, Maryland) is currently seeking a detail-oriented data analyst to provide bioinformatics support to its research investigators performing large-scale genetic and genomic studies aimed at understanding gene expression and the basic mechanisms underlying human disease.

Position Description:
The ideal candidate will be a detail-oriented bioinformatics specialist who is able to independently analyze gene expression (microarray) and similar large-scale data sets. The successful applicant will have primary responsibility for the analysis of array-based data, the identification of differentially expressed genes, and the generation of ontology and pathway reports. The successful applicant will also provide support and training to investigators using array analysis software licensed by NHGRI, as well as provide further collaborative research support as needed.

Position Requirements:

Highly qualified candidates will possess:

Education Requirements:

Anthony P. Lavin
Pinnacle Resources Inc.
5626 Southwestern Blvd.
Baltimore, MD 21227
800-210-3531 (toll free)




Posted 02/09/09

Clinical Database Specialist
NIH/NHGRI

The Intramural Research Program of the National Human Genome Research Institute, National Institutes of Health (Bethesda, Maryland) is currently seeking a Clinical Database Specialist to provide database support to its research investigators performing clinical studies.

Position Description:
The ideal candidate will be a detail-oriented database specialist who is able to assist in the implementation and support of a Web-based relational database used in clinical research studies having a genetic focus. The successful applicant will provide support and training to database users, work directly with database developers to address problems and make enhancement requests, have the skills to manipulate large datasets, and play a key role in gap analysis and the mapping of legacy data. The successful applicant will work within an established framework of security and privacy regulations and guidelines for handling patient information.

Position Requirements:

Highly qualified candidates will possess:

Education Requirements:

Anthony P. Lavin
Pinnacle Resources Inc.
5626 Southwestern Blvd.
Baltimore, MD 21227
800-210-3531 (toll free)




Posted 02/09/09

Scientific Programmer
NIH/NHGRI

The Intramural Research Program of the National Human Genome Research Institute, National Institutes of Health (Bethesda, Maryland) is currently seeking a detail-oriented programmer to join its Bioinformatics and Scientific Programming Core.

The successful candidate will have the opportunity to work with NHGRI research investigators performing a variety of large-scale genetic and genomic studies. These investigators employ cutting-edge technologies, such as next-generation sequencing methods, to advance our understanding of the basic mechanisms underlying human disease. The contributions of programmers within the Bioinformatics Core are often recognized be co-authorship on publishes scientific manuscripts.

Position Requirements:

Desired Skills & Experience:

Education/Training:

Anthony P. Lavin
Pinnacle Resources Inc.
5626 Southwestern Blvd.
Baltimore, MD 21227
800-210-3531 (toll free)




Posted 02/06/09

Research Associate/Research Fellow Positions
University of Western Australia

Position Title: Research Associate/Research Fellow
Multi-scale Modeling of Transport through Deformable Porous Media
Level: Level A or B (depending upon qualifications and experience)
Position Number: 308229
Where: The University of Western Australia, Perth Australia

Description:
This position will be involved in an Australian Research Council (ARC) funded project to be undertaken by the applicant and chief investigators dealing with "multi-scale modeling of transport through deformable porous materials". Understanding solute transport through porous materials is essential because it provides a technical basis for answering many important questions in society today-how can humans avoid `brittle bones', how to design durable infrastructure, how to safely store wastes (e.g. hazardous (e.g. radionuclides) and municipal). The solution of each of these problems requires innovation in model development, new methods of analysis, and insightful interpretation of results. The specific aims and applications for this project are: (i) to theoretically derive multi-scale transport equations for coupling phenomena based on detailed information at lower scales (from meso- and microscale physical and chemical analysis), and to develop general computational approaches that result in tractable problems; (ii) to develop a solute transport model that quantifies the movement of small molecules (like oxygen) and larger molecules (like sclerostin) in the lacunae-canaliculi system of bone tissue under mechanical loading, (iii) to develop a multi-species, reactive, coupled transport model for deforming porous materials; (iv) to develop radionuclide solute transport models for compacted bentonite barriers; and (v) to establish fundamental relationships between chloride diffusion coefficients in cement-based materials based on diffusion testing and electrokinetic methods.

For more information go to:

https://www.his.admin.uwa.edu.au/jobvacs/external/academic/doc/doc1316576.RTF

Position Title: Research Associate/Research Fellow
Computational modeling of biological systems
Level: Level A or B (depending upon qualifications and experience)
Position Number: 308230
Where: The University of Western Australia, Perth Australia

Description:
The role of the position is to develop computational/mathematical models of biological systems. Models will be developed to integrate a wide range of biological processes, including: tissue deformation, fluid-tissue interactions, cell population dynamics, inter and intra-cellular communication (systems biology), and protein synthesis. Projects cover aspects of cancer biology (specifically colorectal and prostate cancer), regenerative medicine and osteoarthritis, and glaucoma surgery. Close collaboration with key experimentalists in these fields is expected. Typically models will involve a combination of partial differential equations, ordinary differential equations and discrete methods (e.g. molecular dynamics, cellular automata). Researchers will be matched to projects based on expressed interests and background experience. Work on other research and consulting projects may be required from time to time. Several positions are available.

For more information go to:

https://www.his.admin.uwa.edu.au/jobvacs/external/academic/doc/doc1316580.RTF




Posted 02/06/09

Postdoctoral Fellowship: Evolutionary Theory/Mathematical Biology
Queen's University

Applications are sought from outstanding researchers for a 2-year postdoctoral position in evolutionary theory, working in the lab of Dr. Troy Day in the Departments of Mathematics and Statistics and the Department of Biology at Queen's University (www.mast.queensu.ca/~tday). The specific research topic is open, with current projects in the lab focusing on developing theory for kin selection and spatial models of evolution, host/parasite epidemiology and (co)evolution, evolutionary immunopathology, genomic imprinting and nongenetic inheritance, and coral bleaching. The successful applicant will be free to conduct research in any of these or other related areas of interest. Ideally the position will be taken up by Sept. 1, 2009 but there is some flexibility in start date. Salary will be C$40,000 per year.

Information about the Department of Mathematics and Statistics, the Department of Biology, and Queen's University can be found at www.mast.queensu.ca, http://biology.queensu.ca and www.queensu.ca respectively.

To apply, send a current CV and a statement of research interest to Troy Day via email (tday@mast.queensu.ca). Please include the names of 2-3 potential referees, but applicants need not solicit reference letters at this stage. Review of applications will begin on March 15, 2009 and continue until the position is filled.




Posted 02/06/09

Postdoctoral Research Assistant
Oxford University

OXFORD UNIVERSITY COMPUTING LABORATORY
Three Year Post-Doctoral Research Assistant
Development of personalised mathematical models of coronary blood flow

The Computing Laboratory has a vacancy for a Post-Doctoral Research Assistant, as part of an EPSRC funded research project working on the development of computational, fluid-mechanical, cardiac models. Specifically, this post will involve applying multi-scale modelling techniques and numerical methods, to produce personalised models from unique data measuring coronary blood supply to cardiac tissue.

The post, which is a full-time three year fixed term appointment, has a salary on the University grade 7s scale (currently £28,839 to £38,757 pa), includes membership of the University Superannuation Scheme, has an annual leave entitlement of 38 days per year (inclusive of all public holidays and university closed periods), and is available for immediate start.

Further details of the post, including the selection criteria and method of application are available from http://www.comlab.ox.ac.uk/jobs.

The closing date for applications is Friday 6th March 2009.

Oxford University is an Equal Opportunities Employer




Posted 02/06/09

Postdoctoral Position: Computational Biology
John Innes Centre

Postdoctoral Opportunity in Computational Biology at The John Innes Centre, Norwich, UK.

Applications are invited for a Postdoctoral Researcher in the Group of Professor Martin Howard in the Department of Computational and Systems Biology.

The successful candidate will join a team working in the area of computational biology/biological physics, focusing in particular on the spatiotemporal dynamics of proteins both inside single cells and in developmental biology. Current areas of interest in the group include protein localisation inside bacteria, fluctuations in morphogen gradients, mechanisms of robust signal transduction/amplification and membrane receptor dynamics. Further details of this project and the laboratory can be found at http://www.jic.ac.uk/profile/martin-howard.asp.

The John Innes Centre is a world-class Institute and is looking to appoint an exceptional candidate who has, or expects to soon receive, a PhD in theoretical physics, bio-mathematics or related subject. Prior experience in biological modelling is desirable but not essential. Creativity and intellectual independence are essential, and proven ability to write scientific papers is desirable. The successful candidate must be available to travel to international meetings and for short visits to collaborating laboratories abroad. We will be providing the job-holder with opportunities to develop their technical and transferable skills during this assignment, by way of training programmes, coaching and mentoring.

The appointment will be as a Postdoctoral Researcher for up to 2.5 years and the salary will be within the range £26,088 to £28,986 dependent upon qualifications and experience. This post may attract an additional retention and recruitment allowance. Further details of eligibility are available from http://www.jic.ac.uk/corporate/opportunities/vacancies/PDF_Scheme_overview.doc.

For further information and details of how to apply, please visit our web site http://jobs.jic.ac.uk or contact Human Resources, The Operations Centre, Norwich Bioscience Institutes, Norwich, NR4 7UH, UK, 01603 450462 quoting reference 1001799. Informal enquiries can be directed to martin.howard@bbsrc.ac.uk

The closing date for applications will be 12th February 2009.

The John Innes Centre is a registered charity (No. 223852) grant-aided by the Biotechnology and Biological Sciences Research Council and is an Equal Opportunities Employer.




Posted 01/30/09

Faculty Position: Mathematical Modeling
FHCRC and University of Washington

Associate or Assistant Member KW - 22181

Faculty Position in Mathematical Modeling of Immune responses and Within-host Dynamics of Infectious Diseases

The Vaccine and Infectious Disease Institute of the Fred Hutchinson Cancer Research Center (FHCRC) and the University of Washington (UW) are jointly recruiting a full-time faculty position at the Assistant or Associate Member level in the Public Health Sciences Division of the FHCRC with a joint appointment as an Assistant or Associate Professor without tenure in the Department of Global Health at the UW. Preference is given to those with a professional expertise in mathematical, statistical and computational methods for understanding the dynamics of immune responses and pathogens.

Ph.D. qualification is required in one of the following areas: evolutionary biology, evolutionary ecology, mathematics and biology, population biology, or related field. The applicant should have a strong track record in basic immunology, the biology of infectious diseases, the use of deterministic and stochastic modeling, analytic and computational approaches, and statistical analysis. Expertise in the area of HIV, influenza, TB, malaria, HSV2, dengue, cholera, or other important infectious diseases in the developing and developed world will be particularly welcomed. This individual will be expected to develop an independent research program. A vital role of this position will be to forge collaborations between colleagues at FHCRC and UW; the successful candidate should have a proven ability to establish productive collaborations with both theorists and experimental immunologists. Salary DOE + excellent benefits. Interested candidates may submit a CV, a concise statement of their research plan, and three (3) letters of reference to:

Helen Pagal
Vaccine and Infectious Disease Institute
Public Health Sciences Division
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N., LE-400
P.O. Box 19024
Seattle, WA 98109

The University of Washington and the Fred Hutchinson Cancer Research Center are affirmative action, equal opportunity employers. We are dedicated to the goal of building a culturally diverse and pluralistic faculty and staff committed to teaching and working in a multicultural environment and strongly encourage applications from women, minorities, individuals with disabilities and covered veterans.

The University of Washington, a recipient of the 2006 Alfred P. Sloan award for Faculty Career Flexibility, is committed to supporting the work-life balance of its faculty.




Posted 01/30/09

Postdoctoral Fellow
University of Sydney

Postdoctoral Fellow in Mathematics of Collective Behaviour

Schools of Biological Sciences and of Mathematics and Statistics
Faculty of Science
Reference No. 145106

The Faculty of Science is a leading provider of education across the spectrum of the sciences. It offers a diverse range of specialisations, research programs and facilities, and an extensive liaison with international institutions. The Schools of Biological Sciences and Mathematics and Statistics are a core part of the Faculty dedicated to producing world-class research teaching and research programs in Biology and Mathematics.

The Schools are currently seeking a results-driven Postdoctoral Fellow to conduct research into a project that will investigate how different nest-site requirements have shaped collective decision-making processes in two species of honey bee. In recent years nest-site selection by colonies of insects has served as a model system to study the speed-accuracy trade-off in decentralised decision-making systems.

This project will investigate the speed-accuracy trade-off in the cavity nesting western hive bee Apis mellifera and the open nesting red dwarf bee A. florea. Both regularly need to select a new nest site and both need to come to a decision quickly while selecting the most appropriate site. However, due to their fundamentally different nest site requirements (a cavity in a tree versus a shaded branch) natural selection has shaped their respective speed-accuracy trade-offs in different ways to ensure the best possible outcome for each species.

For more information about the position please visit:
http://positions.usyd.edu.au/steam145106email

For specific information about the position, please contact Associate Professor Madeleine Beekman by email: mbeekman@bio.usyd.edu.au or Dr. Mary Myerscough by email: m.myerscough@maths.usyd.edu.au

General enquiries can be directed to Fabrice Noël on (+61 2) 9036 7295 or by email: f.noel@usyd.edu.au

Closing Date: 5 February 2009




Posted 01/15/08

Tenure-track Position: Biostatistics/Bioinformatics
NICHD/NIH

Health and Human Services
National Institutes of Health
Eunice Kennedy Shriver National Institute of Child Health and Human Development

Tenure Track or Tenured Investigator, Biostatistics and Bioinformatics Branch (AC905)

The Division of Epidemiology, Statistics and Prevention Research of the Eunice Kennedy Shriver National Institute of Child Health and Human Development invites applications for the position of Tenure Track or Tenured Investigator in the Biostatistics & Bioinformatics Branch. Branch members engage in methods research and actively collaborate with Division investigators on cutting-edge studies in genetics, environmental and lifestyle influences on human reproduction and development, and health behaviors of adolescents. Statistical research is typically motivated by and contributes to challenges encountered in collaborative research. Examples include efficient study design, identifying and quantifying gene-environment interactions, predicting individualized risk, estimating the probability of conception or birth, addressing errors in exposure and clinical measurements, and developing strategies to identify true associations in genome-wide scans for disease-producing genetic variants.

Applications will be evaluated with regard to their potential to develop a creative and productive independent program of relevant statistical research and experience in collaborative research. Individuals with research expertise in the analysis of high-dimensional data, Bayesian methods, quality control and analytic methods for laboratory measurements, and in statistical computing and bioinformatics are particularly encouraged to apply.

Division resources include: state-of-the-art computing facilities (Biowulf Cluster running the GNU/Linux operating system), programming support for statistical methodology and collaborative projects and access to a diverse array of databases and biospecimen banks.

Candidates must have an earned doctorate in biostatistics, statistics or a closely related field, excellent communication skills, refereed methods and collaborative publications, and evidence of successful mentoring and professional service. Tenured investigators should have international stature. The ideal candidate will have research experience working on projects related to the Division's research portfolio.

Full Federal benefits including salary, leave, health and life insurance, long-term care insurance, retirement, and savings plan (401k equivalent) will be provided.

Interested individuals should email a cover letter describing current and future research interests and professional accomplishments along with a curriculum vitae and the names and contact information for three references to:

Mr. Paul Errett
Administrative Officer
NICHD
6100 Executive Blvd, Room 7B05
Rockville, MD 20852
errettp@mail.nih.gov

Applications received by February 1, 2009 will be considered for a first round of interviews, but applications will be accepted until the position is filled.

The HHS and NIH are Equal Opportunity Employers.




Posted 01/15/08

Research Associate Positions: Unconventional Computing
University of the West of England, Bristol, UK

Two positions open in Unconventional Computing
Leverhulme Trust Research Project
"Mold intelligence: Designing Biological Amorphous Robots"
University of the West of England, Bristol, UK

We are looking for physicists, biologists, computer scientists or chemists to fill two Research Associate positions in Unconventional Computing to undertake laboratory experiments and computer simulation of plasmodium of Physarum Polycephalum.

These are fixed term 3 year positions based the Unconventional Computing Group, UWE, Frenchay Campus, Bristol.

See more details at:
http://info.uwe.ac.uk/vacancies/job_details.asp?ref=R12184/RWS
http://info.uwe.ac.uk/vacancies/job_details.asp?ref=R12186/RWS

Please contact Prof Andy Adamatzky <andrew.adamatzky@uwe.ac.uk>




Posted 01/15/08

Post-doctoral Opportunities
NIMBioS, University of Tennessee

The National Institute for Mathematical and Biological Synthesis (NIMBioS) provides an opportunity for postdoctoral scholarship at the interface between mathematics and biological science at the University of Tennessee. Highest priority will be given to those with explicit plans to develop their ability to effectively carry on research across these fields. We are particularly interested in requests to support research that integrates diverse fields, requires synthesis at multiple scales, and/or makes use of or requires development of new mathematical/computational approaches. NIMBioS Postdoctoral Fellows are chosen based upon indications that the applicant's research plans are consistent with the mission of NIMBioS, the applicant has the demonstrated ability to carry out the proposed research, and the opportunities provided through NIMBioS will enhance the capacity for the research to be completed in an efficient and timely manner.

For additional information on NIMBioS, visit www.nimbios.org.

SUPPORT: annual stipend of $51,000, full University of Tennessee employee fringe benefits, and an annual travel allowance of $2,000.

TO APPLY: Submit a brief project description, references, and CV following the guidelines available at http://www.nimbios.org/postdocs/postdoc.html to Dr. Chris Welsh at cwelsh@utk.edu.

DEADLINE: NIMBioS postdoctoral requests for support are reviewed twice a year and the selected researchers are offered positions at NIMBioS where they conduct research that is mostly self-directed. The deadline for activities beginning 1 September 2009 is 1 March 2009.




Posted 01/15/08

Summer Fellowships for Young Scientists International Institute for Applied Systems Analysis

Summer Fellowships for Young Scientists at the International Institute for Applied Systems Analysis

Funding is available for PhD students interested in three months of collaborative research on Evolutionary and Ecological Modeling in population ecology, evolutionary ecology, community ecology, spatial ecology, and fishery ecology.

Young scientists from all countries are eligible for stipends, provided by IIASA's Evolution and Ecology Program, contributing to travel and accommodation costs. Students from Austria, China, Egypt, Estonia, Finland, Germany, India, Japan, Korea, the Netherlands, Norway, Pakistan, Poland, Russia, South Africa, Sweden, and the USA are eligible for fellowships providing travel, accommodation, and living expenses.

Summer research projects are invited in any of the following areas:

Previous experience with implementing and studying evolutionary or ecological models will be an important asset. Potential applicants are welcome to send informal inquiries about specific research interests and plans to Ulf Dieckmann (dieckmann@iiasa.ac.at).

Online applications have to be submitted before January 19, 2009.

Since 1977, the annual Young Scientists Summer Program (YSSP) of the International Institute for Applied Systems Analysis (IIASA) in Laxenburg, Austria, has attracted 1400+ students from 70+ countries. The YSSP 2009 will take place from June 1 to August 31, 2009. IIASA is located in the former summer palace of Austria's royal family, ca. 15 km south of Vienna. IIASA's summer program offers exceptional opportunities for acquiring experience in an international and interdisciplinary research environment. Research training is based on regular personal interaction with advising scientists, and typically leads to a publication in an international journal (as well as to a chapter in a candidate's PhD thesis).

Some useful links:
http://www.iiasa.ac.at/Admin/YSP/reg-info/more_about_the_program.html
Details about the summer program, and online application

http://www.iiasa.ac.at/Research/EEP
Information about IIASA's Evolution and Ecology Program

http://www.iiasa.ac.at/Research/EEP/Students.html
Examples of successful YSSP projects

http://www.iiasa.ac.at/docs/IIASA_Info.html
General information about IIASA




Posted 12/28/08

Faculty Position: Mellichamp Chair in Systems Biology
UCSB

The University of California Santa Barbara seeks to hire a highly creative and productive individual to fill a Mellichamp Chair in Systems Biology. The opening has resulted from a philanthropic gift that has been generously donated by Duncan and Suzanne Mellichamp.

Candidates at all levels will be considered. The primary academic appointment will be in either Mechanical Engineering or Electrical Engineering, with a possible joint appointment in a related science department.

UCSB's core strengths in Systems Biology lie in the areas of multi-scale stochastic modeling and computation, control and dynamics in biological networks, and robustness analysis of gene regulatory networks. The Systems Biology program is supported and enhanced by a collection of interdisciplinary research and education centers, including the Center for Control Dynamical Systems and Computation, the ARO-sponsored Institute for Collaborative Biotechnologies, the California NanoSystems Institute, the NSF-sponsored Materials Research Laboratory, the NSF- sponsored Center for Bio-image Informatics and the Kavli Institute for Theoretical Physics.

Highly qualified individuals from all relevant disciplines in all areas of systems biology and synthetic biology are encouraged to apply.

Applications must be submitted electronically in PDF format to sysbio-me@engineering.ucsb.edu. Applications should contain a letter briefly outlining career plans, a statement of research and teaching interests, curriculum vitae, and names and contact information for 3 - 5 references. Address applications to:

Systems Biology Search
Department of Mechanical Engineering
University of California, Santa Barbara

Applicants are encouraged to submit their applications by January 31, 2009. However, the search will remain open until the position is filled.

We are especially interested in candidates who can contribute to the diversity and excellence of the academic community through research, teaching, and service. The University of California is an equal opportunity, affirmative action employer.




Posted 12/28/08

Tenure Track Positions: Math Department
University of Houston

The Mathematics Department at the University of Houston expects to fill five positions at either the assistant tenure track level or the tenure associate level. Candidates working in all areas of mathematical biology are encouraged to apply. The University of Houston takes part in a new Center for Mathematical Biosciences:
http://www.math.uh.edu/cmb/

We are particularly interested in mathematicians who can help foster collaborative efforts with existing research teams in our Department and the University at large, and whose research interests will continue to foster collaborative interactions at local Universities, as well as with Industry and the Texas Medical Center in Houston.

Successful applicants at the associate level will be expected to fill leadership roles in the department. They should have an established research program, a history of success in attracting external funding, experience supervising graduate students, and strong communication and teaching skills.

The University of Houston is one of the most diverse research universities in the nation. It is an Equal Opportunity/ Affirmative Action employer. Minorities, women, veterans and persons with disabilities are encouraged to apply. Applicants should submit a letter of application, an extensive curriculum vita which includes a list of all scientific publications and a description of their current research interests. They should have 4 letters of recommendation (at least one of which addresses their qualifications as a teacher and advisor), sent directly by their references.

All application materials should be sent to:
Hiring Committee
Department of Mathematics
University of Houston
4800 Calhoun Road
Houston, TX 77204-3008




Posted 12/28/08

Postdoctoral Research Assistant
University of Oxford

Postdoctoral Research Assistant at the Control Engineering - Systems Biology Interface

Department of Engineering Science, University of Oxford.

Applications are invited for the above post which is available for up to 8 months in the Department of Engineering Science at the University of Oxford. This post will involve working in Systems Biology from a Control Engineering perspective. The position suits a theoretician with a control engineering, mathematical or computer science background. The aim is to use control engineering tools to understand the design principles and robustness properties of different feedback mechanisms in the chemotaxis network of the bacterium R. sphaeroides. This signal transduction network has an interesting feedback structure which can be understood from a control engineering perspective. The successful candidate will become part of the growing and flourishing inter-disciplinary environment in Oxford working in Systems Biology. The work will be partly mathematical, partly computational and will involve close interaction with researchers in Biochemistry.

You should have a good first degree and have completed or are about to complete a doctorate in Engineering, Mathematics, Computer Science or a related subject. A good publication record in internationally peer-reviewed journals commensurate with stage of career is expected, and evidence of previous research experience in Systems Biology is an advantage. The ability to carry out independent research and to develop mathematical algorithms and simulations in MATLAB is required. Experience of working in a team, a demonstrated ability to write clear, correct, concise English and make clear, well illustrated presentations of scientific material are all desirable.

The starting salary will be in Grade 7 £28839 - £2970

Further particulars (http://www.eng.ox.ac.uk/jobs/fp/DF08075fps.pdf) and personal details form (http://www.eng.ox.ac.uk/jobs/fp/personal_details_form.pdf) may also be obtained by telephoning 01865 273013 or by email to administrator@eng.ox.ac.uk to whom written applications should be made enclosing a curriculum vitae and a fully completed personal details form. Your letter should explain your interest in and relevant experience for this job.

Please quote DF080075 in all correspondence.

The closing date for applications is noon 6th January 2009.

The University is committed to equality and valuing diversity (http://www.admin.ox.ac.uk/eop/policy/cop.shtml).




Posted 12/28/08

Postdoc Position: Large-Scale Ecosystem Functioning
Stellenbosch University

Understanding the effects of climate change and land use on ecosystem functioning is a challenging question addressed by the team of environmental and biological scientists on the BIOTA-AFRICA project (www.biota-africa.org). As part of the BIOTA-Southern Africa (Phase III) project, this post-doctoral fellowship will entail analyzing the long-term data collated over the past 8 years from 35 observatories and 800 sub-sites across the southern African transect (from Cape Point, South Africa, to Caprivi, Namibia). Specific questions involved in the project include (1) relationships between abiotic factors (e.g. soil nutrient content and habitat heterogeneity) with ecosystem structure and community composition (e.g. woody cover and species turnover); (2) the influence of land use on soil respiration and therefore ecosystem productivity; (3) spatial and scaling patterns of species and soil type distributions; (4) spatiotemporal modelling of the plant-soil interactions under the current climate change regime.

Preference will be given to candidates with strong skills in large-scale data analysis using GIS and statistical multivariate methods. The candidates will also be able to publish the output in peer-reviewed journals. The German Federal Ministry of Education and Research is offering a commencing fellowship of an amount of R120,000 for 2009, and the position will be based in Stellenbosch University, South Africa. In addition to the fellowship, the successful candidate will also be provided with a laptop computer and other research equipment. Subsistence and transport costs during research expeditions will be covered. The post-doc will work under the supervision of Dr. Cang Hui (DST-NRF Centre of Excellence for Invasion Biology) and Dr. Anthony J. Mills (Department of Soil Science).

A detailed CV, project outline (one-page maximum) and one/two publication reprints, together with contact details of two references, should be sent by email to chui@sun.ac.za and mills@sun.ac.za by the end of February 2009. The candidate should be able to start in the first quarter of 2009




Posted 12/28/08

Bioinformatics Postdoc
Astra Zeneca Oncology, Amsterdam

Topic:
Pathway-based tumour characterisation by alignment against cell panels along multiple molecular dimensions.

Research:
Astra Zeneca Oncology has constructed large cell panels to serve as in vitro models for drug response. These cell panels have been extensively characterized by mutation analysis, mRNA expression, aCGH, response to a wide variety of drugs, micro-RNA expression and phosphoprotein characterization. In parallel, the same measurements are being performed on a collection of colorectal samples. In this project two aims are pursued. First, a comparative analysis will be performed between the cell line data and the tumor data to determine the multi-dimensional molecular states spanned by the cell lines and whether these states faithfully recapitulate the space spanned by a representative and clinically relevant selection of tumor samples. Guided by this mapping and by following a pathway-based approach, integrative modeling will be applied on the cell line panel data to construct models predictive of resistance.

Job description:
The successful candidate will be responsible for the bioinformatics analysis of the cell line and tissue data. More specifically, these tasks include 1) constructing a comprehensive gene list of the PI3K and ERK network; 2) Molecular characterisation of the colorectal cell panel and tumour samples through integrative analysis of the various data sources within the space spanned by the identified network genes and 3) Pathway-based alignment of cell panel to tumours to determine the extent to which the cell panel recapitulates the heterogeneity in the tissue set.

Location:
The position is embedded within the Bioinformatics and statistics group lead by Dr Lodewyk Wessels (http://bioinformatics.nki.nl) at the Netherlands Cancer Institute, Amsterdam and the Oncology Informatics group, Discovery Medicine, Astra Zeneca, Alderley Park, UK lead by Dr Tim French. We plan to have regular meetings, and the postdoc will also spend time at both locations.

Requirements:
Candidates should fulfill the following criteria

Conditions of Employment:
The successful candidate will be employed by the Netherlands Cancer Institute. The employment conditions follow general employment rules as laid down in the 'CAO' for hospitals. The salary will be determined depending on education and experience.

Contact and Applications:
Dr. Lodewyk Wessels, tel. +31 20 512 7987 or e-mail: l.wessels@nki.nl or Dr Tim French Discovery Medicine, Cancer Bioscience, tel. +44 1625-519922 or e-mail: Tim.French@AstraZeneca.com. Applicants should send a CV, list of publications and the names and addresses of at least two persons that can be approached to obtain further information.

Website:
http://bioinformatics.nki.nl

Closing date:
30 January 2009




Posted 12/28/08

Postdoctoral Fellow: Mathematics of Collective Behaviour
University of Sydney

Postdoctoral Fellow in Mathematics of Collective Behaviour
Schools of Biological Sciences and of Mathematics and Statistics
Faculty of Science

Reference No. 145106

The Faculty of Science is a leading provider of education across the spectrum of the sciences. It offers a diverse range of specialisations, research programs and facilities, and an extensive liaison with international institutions. The Schools of Biological Sciences and Mathematics and Statistics are a core part of the Faculty dedicated to producing world-class research teaching and research programs in Biology and Mathematics.

The Schools are currently seeking a results-driven Postdoctoral Fellow to conduct research into a project that will investigate how different nest-site requirements have shaped collective decision-making processes in two species of honey bee. In recent years nest-site selection by colonies of insects has served as a model system to study the speed-accuracy trade-off in decentralised decision-making systems.

This project will investigate the speed-accuracy trade-off in the cavity nesting western hive bee Apis mellifera and the open nesting red dwarf bee A. florea. Both regularly need to select a new nest site and both need to come to a decision quickly while selecting the most appropriate site. However, due to their fundamentally different nest site requirements (a cavity in a tree versus a shaded branch) natural selection has shaped their respective speed-accuracy trade-offs in different ways to ensure the best possible outcome for each species.

For more information about the position please visit:
http://positions.usyd.edu.au/steam145106email

For specific information about the position, please contact Associate Professor Madeleine Beekman by email: mbeekman@bio.usyd.edu.au or Dr. Mary Myerscough by email: m.myerscough@maths.usyd.edu.au

General enquiries can be directed to Fabrice Noëon (+61 2) 9036 7295 or by email: f.noel@usyd.edu.au

Closing Date: 5 February 2009




Posted 12/28/08

Postdoc Positions: Neurotechnology
Bernstein Focus for Neurotechnology

5 Postdoc-Positions in Neurotechnology Neurotechnology is a rapidly growing field of research, thriving to repair, replace or support physical functions affected by nervous system diseases by technical means.

At the Bernstein Focus for Neurotechnology (BFNT) we exploit electrical and chemical signals recorded in the brain to control external or implanted devices.

The BFNT efforts are organized in projects on fundamental neurotechnological research, the development of new techniques, clinical testing and neuroethical considerations.

Postdoc-Positions are available in the following projects:

Further details on: www.bfnt.uni-freiburg.de/jobs




Posted 12/22/08

Summer Student Positions
Argonne National Laboratory

There is still time for graduate students to apply for a 2009 summer research position as a Wallace Givens Associate at Argonne National Laboratory. Candidates must be in an accredited Ph.D. program in mathematics, applied mathematics, computer science, or a related field at a U.S. university. Givens Associates will work actively with MCS scientists designing, analyzing, and implementing numerical methods.

During the appointment period, participants receive a stipend of $4,000 to $4,200 per month, depending on experience level. Transportation expenses are reimbursed for one round trip between the Laboratory and the participant's home or university.

The first step in the application procedure is sending your current resumé as a .PDF file, along with having three letters of reference sent to Ms. Lisa Reed, Division of Educational Programs, Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, IL 60439 (Lreed@dep.anl.gov). This material must be received at Argonne by February 2, 2009.




Posted 12/22/08

Postdoctoral Research Opportunities
National Institute of Standards and Technology (NIST)

The US National Research Council (NRC) Associateship Program is accepting applications for two-year appointments for postdoctoral research at the National Institute of Standards and Technology (NIST) in Gaithersburg, Maryland and Boulder, Colorado. Among the topic areas of interest are image analysis, dynamical systems, combinatorial and discrete algorithms, applied optimization & control, scientific data mining, immersive visualization, and parallel & distributed computing, as well as modeling and analysis in fluid dynamics, electromagnetics, materials science, computational biology, network science, and quantum information. For details see:

http://math.nist.gov/mcsd/jobs/postdoc.html.

Competition for postdoctoral awards across all NIST technical program areas is managed by the NRC. Applications must be submitted directly to the NRC; the deadline for applications is February 1. The NRC program at NIST is restricted to US citizens.




Posted 12/22/08

Computational Engineering Faculty Position
MIT

The MIT School of Engineering seeks an outstanding individual for a tenure-track position in the area of Computational Engineering at the assistant or untenured associate professor level. In exceptional circumstances more senior candidates will be considered. The position shall be associated with the "home" engineering department most suitable for the selected candidate.

Applicants must have earned a doctorate by the beginning of the appointment period in an appropriate field of engineering or mathematics or a related field; must have demonstrated the ability to carry out outstanding research; and must have shown strong promise for exceptional teaching.

All areas of computational engineering are of interest. Emphasis is on the development of new computational methodology with strong demonstrated relevance to important engineering disciplines and problems.

Faculty duties will include teaching at the graduate and undergraduate levels, research, and supervision of student research. The applicant is expected to teach graduate computational engineering material in the School of Engineering, and to teach undergraduate core disciplinary material in the designated home engineering department.

Interested applicants should submit application materials electronically at https://school-of-engineering-faculty-search.mit.edu/soe-compeng.adp. All applications received by March 15, 2009, shall receive full consideration. MIT is an equal opportunity/affirmative action employer. Women and minorities are encouraged to apply.




Posted 12/17/08

Chair in Computatinal Biology
Heriot-Watt University

Chair in Computational Biology - Ref 169/08/W

The Life and Physical Sciences Interface Theme at Heriot-Watt University wishes to appoint a Professor of Computational Biology.

The post is based in the School of Mathematical and Computer Sciences (MACS) and a major element of the role is to build multidisciplinary interactions with other groups in the university with excellent research in the Life Sciences and Interfaces.

Applicants should have a track record in a mathematical, statistical or computational aspect of biology.

Applicants are welcome from outstanding applicants at all career stages and an appointment may be made at any level up to Chair. For recruitment to senior levels, an outstanding track record of winning research funding as a principal investigator is required.

Ref: 169/08/W
Closing date: 31 January 2009

Please see : http://www.hw.ac.uk/hr/v_academic.php#16808




Posted 12/17/08

Permanent Modeller/Statistician
HPA, London

Job Title: Mathematical Modeller/Statistician

Employer: Health Protection Agency Department Statistics, Modelling and Bioinformatics Location London
Salary: £41,262-£48,683 pa
Job Type: Permanent
Closing Date: 22/12/2008
Interview Date: 12/01/2009

Mathematical Modeller/Statistician

The Health Protection Agency (HPA) is an independent body that protects the health and well-being of everyone in England and Wales. The Agency plays a critical role in protecting people from infectious diseases and in preventing harm when hazards involving chemicals, poisons or radiation occur. We also prepare for new and emerging threats, such as a bio-terrorist attack or a virulent new strain of pathogen.

We are looking for a mathematical modeller / statistician to take the lead in developing and applying models for real-time forecasting of pandemic influenza and other infections and the impact of public health interventions. A key role of the post will be to support the development of real-time modelling expertise and capacity across the wider HPA. The post holder is expected to identify opportunities for future research in liaison with scientific and medical colleagues across the HPA, and supervise scientific staff within this area. The ideal candidate will have a background in infectious disease modelling and extensive experience in applying Markov Chain Monte Carlo (MCMC) techniques. The post involves a range of complex and original scientific work and requires a high degree of personal motivation.

The post-holder will be based in the Modelling and Economics Unit at the Centre for Infections in Colindale, which is a dynamic and stimulating group comprising infectious disease modellers and health economists working on diverse projects relating to the burden of infectious disease and modelling the impact of interventions against infections.

The Centre for Infections at Colindale, NW London is an internationally renowned centre of excellence for expertise, reference and research, surveillance and epidemiology in relation to micro-organisms that affect human health. The modern purpose built centre is well equipped and staffed and provides excellent Library, Occupational Health and Refectory facilities. There is also a Nursery and Gym on Site.

The Health Protection Agency is an equal opportunities employer.

For further details, please contact Nigel Gay (email: nigel.gay@hpa.org.uk)

To apply, visit http://www.jobs.nhs.uk/cgi-bin/vacdetails.cgi?selection=912152113




Posted 12/17/08

Vacancies: Evolutionary Biodemography
Max Planck Institute

The Max Planck Institute for Demographic Research continues to develop its research activities in the field of Evolutionary Biodemography, and is recruiting to a number of positions. An announcement, linking to http://www.demogr.mpg.de/go/appl-agelife/ , will be appearing soon in Nature, Science etc., and may be of interest to you or to members of your group.




Posted 12/17/08

Tenure-track Positions
Duke University

The Duke Institute for Genome Sciences & Policy (IGSP) and the Duke University Trinity College of Arts & Sciences invite applications for tenure-track faculty positions in the areas of computational, quantitative, or systems biology. We seek applicants with strong quantitative backgrounds (for example, in computer science, mathematics or statistics) and with experience in addressing challenging questions in the life sciences, including genome biology, systems biology, evolutionary genomics, functional genomics, or modeling across biological scales. Appointees will enjoy and contribute to existing strengths in the broad areas of computational and systems biology at Duke and will be affiliated with the IGSP Center for Systems Biology, a campus-wide intellectual center supported as a National Systems Biology Center by the NIH.

A successful candidate will have a tenure-track academic appointment in a suitable department in Arts & Sciences, as well as an appointment as an Investigator in the IGSP, with the possibility for a joint appointment in other departments or schools as appropriate. While the current search is directed to faculty at the rank of Assistant Professor, exceptional candidates may be considered at more senior ranks.

Applicants should submit a curriculum vitae, a brief summary of current and proposed research, a statement of teaching interests and experience, and reprints of up to three publications via the web at www.academicjobsonline.org. Candidates should arrange for at least three letters of recommendation to be uploaded to the website. Applications received before 5 January 2009 will receive full consideration; applications after this date may be considered until positions are filled. Questions about the search may be addressed to bbooher@duke.edu; additional information may be found at www.genome.duke.edu/centers/csb/facsearch.

Duke University is an Equal Opportunity/Affirmative Action Employer; women and members of minority groups are strongly encouraged to apply.




Posted 12/17/08

Postdoc position: Comp. Biomechanics
University of Stuttgart

Opening for a Post-Doc position in Skeletal Muscle Modeling with Applications to Lumbar Spine Mechanics

The Post-Doc is supposed to work on a project focusing on developing novel computational techniques to model skeletal muscles mechanics. The goal is to overcome the computational challenge of realistically modeling lumbar spine muscle mechanics while taking into account the influence of a large number of muscles involved in complex upper body movements. The skeletal muscles are modeled using the Finite Element method in three dimensions and principles of nonlinear continuum mechanics. For this purpose, a good background in computational continuum mechanics, the Finite Element Method, and some programming skills are desirable.

Applications with the usual documents (CV, degree certificates, references, publication list, letter of motivation) should be sent directly to Jun.-Prof. Oliver Roehrle (roehrle (_AT) simtech.uni-stuttgart.de), Institute of Applied Mechanics (CE), Pfaffenwaldring 7, 70569 Stuttgart, Germany. Applications will be accepted until the position is filled.

http://www.mechbau.uni-stuttgart.de/ls2/institut/personen/r%F6hrle/PhDposition.pdf




Posted 12/17/08

Postdoc: Analysis of Signaling Networks
University of Luxembourg

Post Doc in Systems Biology (M/F)
Application End : 28 February 2009

The University of Luxembourg has a vacancy in its Faculty of Science, Technology and Communication for a:

Post Doc in Systems Biology
Fixed term contract (?Assistant-Chercheur?) 2 years, renewable
Reference: F1-080013

Research area: Analysis of Signaling Networks

Within the systems biology group mathematical models (mainly ODE based) of different mammalian signaling pathways are developed. One main focus currently lays on pro- and anti-apoptotic signaling. In addition projects concentrating on JAK/STAT and PGDFR signaling will further characterize their relevance in inflammation related diseases and cancer. Regarding the analysis of the systemic characteristics of the underlying networks, a key position of an ?Assistant-Chercheur? is open for application. This theory-trained person shall provide a profound support of the necessary analyses, e.g. focusing on global sensitivities, identifiability, robustness, modularity and others. Based on the analyses results future experimental strategies shall be suggested in close collaboration with the experimental partners.

Tasks:

Profile:

Offer:

For further information, please contact:
Prof. Thomas Sauter
University of Luxembourg
Life Sciences Research Unit
162a, avenue de la Faïenceri
L-1511 Luxembourg

Tel: +352 466644 6296
Email: thomas.sauter@uni.lu
Url : http://www.isr.uni-stuttgart.de/~sauter/

Interested candidates are asked to send their full application (letter of motivation, detailed CV, copies of diploma, photo) until February 28th, 2009 by e-mail to thomas.sauter@uni.lu.

The University of Luxembourg is an equal opportunity employer.




Posted 12/17/08

Postdoc Position
University of Oxford

POST-DOCTORAL RESEARCH POSITION IN MATHEMATICAL MODELLING OF ION CHANNELS

Oxford Centre for Collaborative Applied Mathematics (OCCAM)
Mathematical Institute, University of Oxford

Closing Date: 9 January 2009
Appointment Term: 2 years

We invite applications for a Postdoctoral research position, funded by the King Abdullah University of Science and Technology Global Research Partnership [KAUST GRP], to work with Prof. S.J. Chapman and Dr R. Erban at the newly established Oxford Centre for Collaborative Applied Mathematics (OCCAM). This position is available from 1 April 2009.

OCCAM has been established with substantial funding from the KAUST GRP. The Centre, which is part of the Mathematical Institute, is allied to a global network of mathematicians. Aiming to meet the ever-increasing global demand for quantitative understanding of complex scientific phenomena, OCCAM has been built on the strength of four pre-existing groups of applied and computational mathematicians working in Oxford: the Oxford Centre for Industrial and Applied Mathematics, the Centre for Mathematical Biology, the Numerical Analysis Group and the Computational Biology Group. It has a symbiotic relationship with other scientific communities which have a need for problem-solving mathematics both within the University of Oxford and beyond. Over the first five years the centre will employ 40 new staff and students.

Further details about the position, including the project description and selection criteria, can be obtained at http://www.maths.ox.ac.uk/node/8183

Other current vacancies at OCCAM can be found at: http://www.maths.ox.ac.uk/groups/occam/vacancies




Posted 12/17/08

Postdoc Position
University of Nottingham

A five year programme within the Centre for Plant Integrative Biology (CPIB) at the University of Nottingham aims to create a virtual root which will serve as an exemplar for using Integrative Systems Biology to model multi-cellular systems. CPIB is jointly funded by the BBSRC and EPSRC as part of their Systems Biology Initiative to establish a number of Centres for Integrative Systems Biology. This project brings together biologists, engineers, mathematicians and computer scientists to generate new data, biological resources and virtual models that will aid understanding of how plant roots grow and develop.

Applications are invited for an applied mathematician on the above Virtual Root project to undertake deterministic (differential-equation based) modelling of gene and signalling networks involved in lateral root emergence. Other duties include publication of this research in peer-reviewed journals and presentations at national and international conferences.

Candidates must have a PhD in applied mathematics or a related area. Research experience in mathematical modelling is essential and experience of multidisciplinary research is desirable. This post will require the person appointed to be able to work independently and as part of a team, to be flexible and to have good communication and interpersonal skills.

Salary will be within the range £27,183 - £35,469 per annum, depending on qualifications and experience (salary can progress to £38,757 per annum, subject to performance). This post will be offered on a fixed-term contract for a period of two years.

Informal enquiries may be addressed to Professor J King, School of Mathematical Sciences, Email: John.King@Nottingham.ac.uk. For general enquiries regarding CPIB contact Professor C Hodgman, School of Biosciences, Email: Charlie.Hodgman@Nottingham.ac.uk. Further details are available at: http://jobs.nottingham.ac.uk/.

Candidates should send a detailed CV, together with the names and addresses of two referees, to Mrs M Axinte, School of Biosciences, The University of Nottingham, Sutton Bonington Campus, Loughborough, Leicestershire, LE12 5RD. Email: Mirela.Axinte@Nottingham.ac.uk. Please quote ref. SCI/543X1. Closing date: 21 January 2009.




Posted 12/17/08

Postdoctoral Position: Modelling Cell Differentiation
University of Dundee

Postdoctoral Position
For Mathematical Modelling of Cell Differentiation during Biofilm Formation
Grade 7 (£28,839 - £35,46

The bacterium Bacillus subtilis is a single celled Gram-positive soil bacterium that can exist as part of an integrated, multicellular community called a biofilm. Biofilm formation is a complex process that depends on cell fate differentiation that occurs in spatio-temporal manner. Biofilms are important in all sectors of our economy with examples ranging from human health - they form the basis of chronic infections, to bioremediation ? they are required for the effective treatment of sewage. B. subtilis has advanced genetic and molecular biology tools ideal for studying the complex development of biofilm communities.

The appointed postdoctoral scientist will be part of an interdisciplinary team and will develop a multi-scale modelling approach to address, at the systems biology level, how biofilm formation is controlled. This will lead to a better understanding of microbial community dynamics with longer term impact on applications to health and industry.

The overall aim of this work is to better understand how perturbations to gene transcription pathways lead to changes in the macro-scale organisation and function of the biofilm. Specific objectives of the proposed work are: i) to model the interplay between key components of the gene transcription network, using a combination of deterministic (ordinary differential equations and dynamical systems theory) and stochastic techniques; ii) model large scale sub-population interactions at the biofilm-scale using partial differential equations. These modelling frameworks will ultimately be used to inform the development of novel, multi-scale modelling approach for the study of the collective behaviour of large numbers of distinct (yet interacting) individual bacteria. The modelling framework will be developed in tandem with state-of-the-art experimental techniques for studying bacterial cell fate differentiation.

This project is funded as an initiation to pump-prime interdisciplinary collaborations in Life Sciences at Dundee. It is planned to develop the ideas formulated over this time period to establish a longer term programme of funded research and suitable candidates would be well-placed to be part of this longer term plan.

Candidates should have, or be about to obtain, a PhD at the interface of mathematics and biology. The post is available for up to 12 months in the first instance and is available immediately.

Informal enquiries can be made to Dr Fordyce Davidson (Division of Mathematics) or Dr Nicola Stanley-Wall (College of Life Sciences), e-mail: fdavidso@maths.dundee.ac.uk; n.r.stanleywall@dundee.ac.uk (applications sent to either of these addresses alone will not be considered ? see below).

Applications in the form of a CV and covering letter, including the names and addresses of 3 referees, should be sent to HR-LifeSciences@dundee.ac.uk quoting LS/2505. Alternatively, please send 2 hard copies of your CV and covering letter to Human Resources, College of Life Sciences, MSI/WTB/JBC Complex, University of Dundee, DD1 5EH.

Applicants will only be contacted if invited for interview.

Closing Date: 16 January 2009




Posted 12/12/08

PhD/Postdoc position, Comp. Biomechanics
U. Stuttgart, Germany

Opening for a PhD/Post-Doc position in Skeletal Muscle Modeling with Applications to Lumbar Spine Mechanics

The PhD student/Post-Doc is supposed to work on a project focusing on developing novel computational techniques to model skeletal muscles mechanics. The goal is to overcome the computational challenge of realistically modeling lumbar spine muscle mechanics while taking into account the influence of a large number of muscles involved in complex upper body movements. The skeletal muscles are modeled using the Finite Element method in three dimensions and principles of nonlinear continuum mechanics. For this purpose, a good background in computational continuum mechanics, the Finite Element Method, and some programming skills are desirable.

The PhD position is within the designated salary bracket TV-L 13 and has a limited tenure of three years with a possible extension. The PhD student will be part of the Graduate School Simulation Technology of the Cluster of Excellence EXC 310 Simulation Technology (SimTech) at Universitaet Stuttgart Applications with the usual documents (CV, degree certificates, references, publication list, letter of motivation) should be sent directly to Jun.-Prof. Oliver Roehrle (roehrle (_AT) simtech.uni-stuttgart.de), Institute of Applied Mechanics (CE), Pfaffenwaldring 7, 70569 Stuttgart, Germany. Applications will be accepted until the position is filled.

http://www.mechbau.uni-stuttgart.de/ls2/institut/personen/r%F6hrle/PhDposition.pdf




Posted 12/12/08

Postdoc position, medical image analysis
University of Pennsylvania

A postdoctoral position is available at the Section of Biomedical Image Analysis (SBIA), of the Department of Radiology, University of Pennsylvania (http://www.rad.upenn.edu/sbia). The successful candidate must have background in Applied Math, Electrical or Biomedical Engineering, or Computer Science. Several project opportunities exist, involving work on deformable registration, segmentation, and pattern classification. SBIA has been a dynamically growing medical image analysis group, including 25 researchers and many collaborators from diverse fields and offers diverse opportunities to researchers with interests in applying math and engineering knowledge and models to the rapidly growing biomedical imaging field. Please e-mail or mail CV's to:

Christos Davatzikos
Director, Section of Biomedical Image Analysis
Professor, Radiology
Joint affiliations: Electrical and Systems Engineering, and Bioengineering
3600 Market street, Suite 380
Philadelphia, PA 19104
christos@rad.upenn.edu




Posted 12/12/08

Faculty Positions, CS/Applied Mathematics
King Abdullah University of Science and Technology

Faculty Openings in Computer Science and Applied Mathematics King Abdullah University of Science and Technology (KAUST) is being established in Saudi Arabia as an international graduate-level research university dedicated to inspiring a new age of scientific achievement that will benefit the region and the world. As an independent and merit-based institution and one of the best endowed universities in the world, KAUST intends to become a major new contributor to the global network of collaborative research. It will enable researchers from around the globe to work together to solve challenging scientific and technological problems. The admission of students, the appointment, promotion and retention of faculty and staff, and all the educational, administrative and other activities of the University shall be conducted on the basis of equality, without regard to race, color, religion or gender.

KAUST is located on the Red Sea at Thuwal (80km north of Jeddah). Opening in September 2009, KAUST welcomes exceptional researchers, faculty and students from around the world. To be competitive, KAUST will offer very attractive base salaries and a wide range of benefits. Further information about KAUST can be found at http://www.kaust.edu.sa/.

KAUST invites applications for faculty position at all ranks (Assistant, Associate, Full) in Applied Mathematics (with domain applications in the modeling of biological, physical, engineering, and financial systems) and Computer Science, including areas such as Computational Mathematics, High-Performance Scientific Computing, Operations Research, Optimization, Probability, Statistics, Computer Systems, Software Engineering, Algorithms and Computing Theory, Artificial Intelligence, Graphics, Databases, Human-Computer Interaction, Computer Vision and Perception, Robotics, and Bio-Informatics (this list is not exhaustive). KAUST is also interested in applicants doing research at the interface of Computer Science and Applied Mathematics with other science and engineering disciplines. High priority will be given to the overall originality and promise of the candidate's work rather than the candidate's sub-area of specialization within Applied Mathematics and Computer Science.

An earned Ph.D. in Applied Mathematics, Computer Science, Computational Mathematics, Computational Science and Engineering, Operations Research, Statistics, or a related field, evidence of the ability to pursue a program of research, and a strong commitment to graduate teaching are required. A successful candidate will be expected to teach courses at the graduate level and to build and lead a team of graduate students in Master’s and Ph.D. research. Applications should include a curriculum vita, brief statements of research and teaching interests, and the names of at least 3 references for an Assistant Professor position, 6 references for an Associate Professor position, and 9 references for a Full Professor position. Candidates are requested to ask references to send their letters directly to the search committee. Applications and letters should be sent via electronic mail to kaust-search@cs.stanford.edu. The review of applications will begin immediately, and applicants are strongly encouraged to submit applications as soon as possible; however, applications will continue to be accepted until December 2009, or all 10 available positions have been filled. In 2008 and 2009, as part of an Academic Excellence Alliance agreement between KAUST and Stanford University, the KAUST faculty search committee consisting of professors from the Computer Science Department and the Institute of Computational and Mathematical Engineering at Stanford University, will evaluate applicants for the faculty positions at KAUST. However, KAUST will be responsible for all hiring decisions, appointment offers, recruiting, and explanations of employment benefits. The recruited faculty will be employed by KAUST, not by Stanford. Faculty members in Applied Mathematics and Computer Science recruited by KAUST before September 2009 will be hosted at Stanford University as Visiting Fellows until KAUST opens in September 2009.




Posted 12/09/08

Faculty Position: Computational Statistics
Marquette University

The Department of Mathematics, Statistics and Computer Science at Marquette University in Milwaukee, WI USA invites applications for a tenure-track, or tenured, assistant, associate, or full professor in computational statistics starting August 2009. Qualifications include: doctorate in statistics or related field, evidence of research, commitment to seeking research funding, and commitment to teaching. The Department places emphasis on basic, applied and collaborative research, teaching, and interdisciplinary programs.

Our faculty maintain close ties with the Medical College of Wisconsin, the Zablocki VA Medical Center, Milwaukee area hospitals, the University of Wisconsin-Milwaukee, and other regional institutions and industrial partners as well as Marquette science and engineering departments.

Review begins January 5, 2008 and will continue until the position is filled. For full details, visit www.mscs.mu.edu.




Posted 12/09/08

Tenure Track Positions
University of Washington Department of Bioengineering

The Department of Bioengineering at the University of Washington is a member of both the College of Engineering and the School of Medicine. Located in the new William H. Foege building, the department is within walking distance to the UW Medical Center, the College of Engineering and the UW campus. We are embarking on an ambitious program to increase the size of our tenure-track faculty, beginning this year by offering at least two new positions. At this time we are particularly seeking extraordinarily qualified candidates with expertise in the following four thematic areas:

Other themes in the Department or future recruitment include: Imaging and Image-Guided Therapy, Analytical Biomedicine, and Learning Engineering from Biology.

Applications are sought at all levels: Assistant, Associate and Full Professor, but those at the Assistant Professor level are particularly encouraged. Ph.D. or M.D. degrees are required, and prior post-doctoral or higher level experience is highly valued. The successful candidate will be expected to develop an internationally recognized research program and to participate in the teaching and service missions of the department. Scientists and engineers who apply should show evidence of excellence, originality and productivity in research and potential for excellent teaching. Successful candidates will also attract strong support from one or more additional departments in Medicine, Engineering or the College of Arts and Sciences and will be expected to follow UW's strong tradition of collaboration across disciplinary boundaries. Candidates with interests in translational medicine are also encouraged to take advantage of our active Coulter Translational Research Partnership. More information can be found at http://depts.washington.edu/bioe.

Applications must be submitted electronically at http://www.engr.washington.edu/facsearch/?dept=BioE. Applicant review will begin December 15, 2008 and continue until the position is filled. All positions are contingent on the availability of funding.

The University of Washington is building a culturally diverse faculty and strongly encourages applications from women, minorities, individuals with disabilities and covered veterans. Faculty engage in teaching, research and service. The University of Washington is the recipient of a 2006 Alfred P. Sloan Award for Faculty Career Flexibility and a 2001 National Science Foundation ADVANCE Institutional Transformational Award to increase the advancement of women faculty in science, engineering and math. The University is an Equal Opportunity, Affirmative Action Employer.




Posted 12/09/08

Postdoctoral Research Assistant and Career Development Fellow
Centre for Mathematical Biology, University of Oxford and St Hugh's College, Oxford

Project: Multiscale modelling of cellular oscillators: applications to vertebrate segmentation and hair follicle cycling.

The Centre for Mathematical Biology (CMB) is looking to recruit a post- doctoral research assistant to work in the area of mathematical and computational modelling of coupled oscillators in biological systems. The position will be held in association with a Career Development Fellowship at St Hugh's College. More specifically, the PDRA will work alongside Dr Ruth Baker and Professor Philip Maini (CMB) and Professor Kevin Burrage (University of Oxford Computing Laboratory) to develop multi-scale models to describe the dynamics two paradigms of coupled biological oscillators: the molecular clock involved in segmentation of the vertebrate body axis and the hair follicle cycle. In either case, models consisting of systems of non-linear differential equations will be developed on the level of the individual oscillator, in tandem with phenomenological models to describe events on the tissue level. Different types of oscillator coupling, the role of noise and the integration of individual-level models into population- level models will be addressed, and there may also be the opportunity to visit experimental collaborators.

Candidates should have extensive experience in the following areas: mathematical modelling and simulation of complex biological systems; applied scientific computing; modelling coupled multi-scale systems. This role would suit individuals who have a first degree in mathematics and a PhD in mathematical modelling, show evidence of independent research, enjoy working in a team and have a meticulous approach to their work. The post-holder will be expected to carry out up to four hours teaching per week for St Hugh's College during term-time.

Further particulars may be obtained from vacancies@maths.ox.ac.uk and at http://www.maths.ox.ac.uk/notices/vacancies/.

If you have any questions or would like to discuss this position then please do not hesitate to contact me via e-mail (ruth.baker@maths.ox.ac.uk).




Posted 12/09/08

Postdoc Position
Odum School of Ecology, University of Georgia

POSTDOCTORAL RESEARCH ASSOCIATE
Odum School of Ecology, University of Georgia, USA

Applications are invited for a postdoctoral research fellowship in Mathematical Epidemiology. The position will involve developing new mathematical models and the analysis of data with a view to understanding the persistence, transmission dynamics and evolution of whooping cough in the US and UK.

A PhD in statistics, applied mathematics or a highly quantitative field is essential. Previous experience in the analysis of ecological or epidemiological systems would be desirable.

The position is for 2 years in the first instance, with a salary in the range of $35-40,000 per year (depending on experience), plus fringe benefits.

For further information about these projects, contact Pej Rohani +1 706 542 9249, e-mail: rohani@uga.edu.

Applicants should send a detailed CV, together with a brief statement of research interests and three references to Pej Rohani, Odum School of Ecology, University of Georgia, Athens GA 30602. Electronic applications are encouraged.

Review of applications will start on Jan 15 and will continue until the post has been filled.




Posted 12/09/08

Postdoc: Infectious Disease Modeler
THETA, U Toronto & U Guelph

Postdoctoral Fellow/Infectious Disease Modeler

Infectious Disease Modeling and Health Economic Evaluation of Pandemic Influenza Mitigation Strategies

A position for a postdoctoral fellow/infectious disease modeler is available at THETA, the Toronto Health Economics and Technology Assessment Collaborative - University of Toronto and the University of Guelph. The postdoctoral fellow/infectious disease modeler will collaborate with project investigators to address questions in the cost-effectiveness of preventive and therapeutic pandemic influenza mitigation strategies, including vaccination, targeted antiviral prophylaxis, treatment and social distancing measures. The postdoctoral fellow/infectious disease modeler will primarily develop, parameterize, and simulate an agent-based model of influenza transmission that projects clinical effectiveness and cost-effectiveness of mitigation strategies. The postdoctoral fellow/infectious disease modeler will also co-author manuscripts and interface with graduate students working on the project.

Major duties: In collaboration with project investigators, the postdoctoral fellow/infectious disease modeler will:

Requirements: A master's (infectious disease modeler) or doctoral degree (postdoctoral fellow) in a related quantitative field (such as mathematics, computer science, statistics, epidemiology, biology, health economics/decision science) with enthusiasm for applying these skills to real-world, policy-relevant problems is required. Demonstrated skill for programming and computing ability at a high level is required, and knowledge of C, Fortran, Java, R, Netlogo, or AnyLogic is essential. Experience in working with complex mathematical/agent-based models is highly desirable, including some or all of: model construction, debugging, simulation, validation and data collection, and policy applications. Excellent organizational, written and verbal skills are essential to success in this position, as is the ability to work independently.

We offer a competitive salary, appropriate to the level of qualifications and experience required for this position. The position may be structured as a one-year full-time or two-year part-time position, with job duties to be specified accordingly.

To express interest or apply for this position, please send a cover letter, CV, and the names and contact information for two referees to Beate Sander (beate.sander@theta.utoronto.ca). Review of applications will begin 5 January 2009 and continue until the position is filled.




Posted 12/09/08

Four Research Jobs
LORIA, Nancy, France

Research Opportunities in High Performance Algorithms for Structural Systems Biology

We have vacancies for two postdoctoral researchers, one graduate software engineer, and one PhD student to work on exciting new projects to develop high performance algorithms and knowledge-based approaches to advance the state of the art in protein-protein docking, protein shape recognition, and high throughput 3D virtual drug screening.

Location: LORIA, Nancy, France
Duration: Two years in the first instance
Starting date: January 1st 2009 (negotiable)
Remuneration: Standard INRIA rates

Candidates for the postdoc positions must have a PhD in one of the mathematical or physical sciences, and must have strong and demonstrable abilities and experience in programming using C or C++ on Unix/Linux or Windows systems. Experience of scripting languages such as Python and PHP would also be desirable. Experience of parallel programming, high performance computing, and computer graphics would be desirable but is not essential. Preference will be given to candidates with a strong interest or background in structural biology, crystallography, computational chemistry, molecular modelling, or related areas. Candidates should have a proven research track record, demonstrated by publications in peer-reviewed journals in one or more of the above areas.

Candidates for the Software Engineering position must have a good Honours or Masters degree in computing science or one of the mathematical or physical sciences, and must have very good programming skills using C or C++. Preference will be given to candidates with an interest or background in structural biology, molecular modelling, or related areas. If progress is good, the successful applicant will be encouraged to study for a PhD.

Candidates for the PhD Studentship should be qualified to Masters level or equivalent in computing science or one of the physical or biological sciences, and must have experience of programming using a procedural language such as C or C++. Preference will be given to candidates with a strong interest in the use of knowledge-based approaches and computer graphics to help advance the state of the art in protein-protein docking. This position could be filled initially by a student with a good Honours degree who would register as a Masters intern before proceeding to undertake a PhD.

For further information, please see:

http://www.csd.abdn.ac.uk/hex/loria_anr_hpassb_advert.html

Please send a detailed CV, which includes the names of two academic referees, along with a brief statement of your research interests and motivation to:

Dave Ritchie: dave.ritchie@loria.fr cc: d.w.ritchie@abdn.ac.uk

Please indicate which post(s) you are applying for. Closing date: 31 December 2008.




Posted 12/08/08

Post Doctoral Position: Integrated Mathematical Oncology
H. Lee Moffitt Comprehensive Cancer Center

Applications are sought for the position of post-doctoral research fellow to work on an exciting inter-disciplinary research project concerning the modeling of Cancer progression and development. We seek a talented individual with a PhD and background in applied mathematics, physics or a computational discipline to work in the unique research environment of the Integrated Mathematical Oncology (IMO) division. The division combines mathematicians, computer scientists, and imaging specialists as well as clinical and experimental oncologists focused on developing novel approaches for the treatment and understanding of cancer.

The successful candidate will have experience in modeling biological systems, with a preference for medical applications using a variety of modeling techniques. As well as demonstrated creativity, high motivation, good communication skills and importantly, experience in developing/writing publications in peer reviewed high impact scientific journals. They should possess the ability to work independently and within the research group. A good understanding of biology and the desire to work closely with experimentalists and clinicians is also necessary. Preference will be given to candidates with the ability to program (C/C++/Java/Matlab), visualise and analyse numerical/experimental data.

The IMO is housed within the H. Lee Moffitt Comprehensive Cancer Center which is a modern facility on the University of South Florida Campus that conducts research on various aspects of Cancer Biology with emphasis on translational research. Research environment includes state of the art modern core facilities and access to experimental and clinical data.

Please navigate to the IMO website (http://www.moffitt.org/imo) and click on Jobs for further information on how to apply. If you have any questions or would like to discuss this position then please do not hesitate to contact me via email (alexander.anderson@moffitt.org)




Posted 12/08/08

Postdoc: Computational Neuroscience
LSUHSC Neuroscience Center

An NIH-funded postdoctoral position in computational neuroscience is immediately available at the LSUHSC Neuroscience Center in New Orleans. The project consists of modeling the generation of the firing pattern in midbrain dopaminergic neurons in close collaboration with electrophysiologists using patch clamp and dynamic clamp techniques. The lab has an established research program in oscillations and synchrony, and the dopaminergic neuron will be modeled as a system of coupled oscillators.

Applicants should be fluent in spoken and written English and have a PhD or equivalent in mathematics, engineering, physics, neuroscience or a related field. Previous experience in some of the following areas is recommended: the NEURON simulation package, C programming, Unix, and linear and nonlinear systems theory, as is the ability and desire to acquire the remaining skills. Candidates who are in a position to join the lab within the next few months are particularly encouraged to apply.

Please send CV to Dr. Carmen Canavier at ccanav@lsuhsc.edu. LSUHSC/NO is AA/EOE Employer.




Posted 12/08/08

Clinical Research Data Manager
Reset Medical

I direct clinical and translational research for a fast-growing medical device company focused on minimally invasive spray cryotherapy technologies. Though we are based in Baltimore, MD, I am casting a wide net for this particular career opportunity, which might be appropriate for a bioinformatics MS student who is interested in clinical research.

As I am currently growing my pulmonary research team, I am seeking a clinical research data manager (job description here) who is interested in creating and maintaining the informatics infrastructure for our current and future clinical trials, which include both treatment protocols as well as patient registries for longitudinal studies. If there is anyone you can recommend or think would be interested in this project, I would appreciate your forwarding this email with the attached job description.

Thank you in advance for your assistance and wishing you success in all your endeavours,

Ethel Rubin, PhD
Chief Science Officer

CSA Medical
Reset Medical
1101 E. 33rd Street, suite E305
Baltimore, MD 21218

443-524-9694 (office)
866-300-5183 (fax)
erubin@resetmed.com




Posted 11/26/08

Faculty Position: Engineering Sci & Applied Math
Northwestern University

Northwestern University's Department of Engineering Sciences and Applied Mathematics invites applications for a full-time faculty position to begin in September 2009. Requirements include a Ph.D. and demonstrated ability to conduct high-impact interdisciplinary research in applied mathematics with focus on applications in engineering and/or the sciences. Duties involve teaching and research. Candidates at all levels are encouraged to apply, but preference will be given to junior level candidates (to be hired as tenure-track assistant professors). To ensure full consideration, applicants should apply online at http://esam.northwestern.edu by January 2, 2009, providing their curriculum vitae and a statement of research interests. At least three letters of recommendation should be sent directly to:

Search Committee Chai
Dept. of Engineering Sciences and Applied Mathematics
2145 Sheridan Road
Northwestern University
Evanston, IL 60208

Northwestern University is an Affirmative Action, Equal Opportunity Employer. Women and minorities are encouraged to apply. Hiring is contingent upon eligibility to work in the United States.




Posted 11/26/08

Tenure-track Position: Ecology & Evolution
University of Chicago

Quantitative Population / Community Biologist

The Department of Ecology & Evolution at The University of Chicago is seeking to fill a tenure track faculty position with an individual whose research emphasizes quantitative, computational or modeling approaches to understanding ecological and evolutionary processes.

The successful candidate will demonstrate innovation in addressing fundamental questions at the core of ecology and/or evolution, with preference given to individuals who bridge these fields. Rank is open, although candidates at the level of ASSISTANT PROFESSOR are especially encouraged to apply. Interested applicants must have a PhD and should submit a CV, 5 selected reprints or preprints, and statements of research and teaching interests to https://ecolevol.uchicago.edu. Applicants should also arrange for three letters of reference to be submitted to this site. Applications will be accepted until the position is filled, but applications and letters must be received before 15 January 2009 to ensure full consideration. The University of Chicago is an Affirmative Action/Equal Opportunity Employer.




Posted 11/26/08

Tenure-track Position: Mathematical Biology
Utah State University

The Department of Mathematics and Statistics at Utah State University seeks an Assistant Professor of Applied Mathematics who will extend and enhance Utah State University?s interdisciplinary research and education programs in mathematical and biological sciences (broadly interpreted). The position is a 9-month, tenure track position in mathematical biology/ecology (a departmental research emphasis). Postdoctoral experience is preferred; a PhD in Mathematics, Applied Mathematics or related discipline is required. The candidate will receive tenure in the Math Department but will be expected to interact with existing, and develop new, interdisciplinary teams, particularly in the Department of Biology, College of Science, departments in the College of Natural Resources, and the University-wide Ecology Center. Duties within the department include teaching graduate and undergraduate classes in applied mathematics (some subset of methods of applied mathematics, partial differential equations, nonlinear dynamics, asymptotic analysis, numerical methods, stochastic processes, applied math in biology) and supervising research students in the industrial/interdisciplinary masters program and the interdisciplinary PhD program.

We are particularly interested in applicants who are excited about opportunities to interact with some of the quantitatively oriented bioscientists on campus, including (but not limited to): Peter Adler(Wild), Michelle Baker (Biology), Barbara Bentz (USDA Forest Service), Mary Conner (Wildland Resources), Todd Crowl (Watershed Sciences), Tom Edwards (USGS/Wildland Resources), Jim Haefner (Biology), Mevin Hooten (Statistics/Wildland Resources), David Koons (Wildland Resources), Keith Mott (Biology), Mike Pfrender (Biology), James Powell (Mathematics/Biology), Ethan White (Biology), Wayne Wurtsbaugh (Watershed Sciences). Utah State University has an excellent climate for interdisciplinary research, with a history of interdisciplinary education and grantsmanship. The candidate?s publications in biological and ecological journals will count with equal weight toward tenure as those in mathematical or statistical journals. The candidate will assist in building and delivering quantitative courses serving Biology, Natural Resource and Ecology Center students as well as the quantitative ecology emphasis being initiated this year.

Candidates should submit a cover letter, three letters of recommendation, and curriculum on USU?s employment website (https://jobs.usu.edu). At least one of the letters should address teaching qualifications. A separate, brief (two pages or less) statement of research interests and capabilities, indicating how the candidate envisions enhancing an interdisciplinary research programs in quantitative biology and ecology, must also be submitted. Full position and application details appear on the USU employment website.

Utah State University is an AA/EOE employer, sensitive to the needs of dual-career applicants. The University was recently chosen as a National Science Foundation ADVANCE Gender Equity Program recipient. Utah State has made a number of successful dual-career appointments and is dedicated to recruiting stellar candidates from a diverse pool including women, minorities, veterans and people with disabilities. The university offers competitive salaries with outstanding medical, retirement and professional benefits ( http://personnel.usu.edu ). USU is in Logan, Utah, a semi-rural city in an Alpine mountain valley with a community of 100,000 people, offering ample opportunities for family-friendly professional life. Local ski resorts, lakes, rivers, and mountains create an excellent recreation environment.

Applicants should apply at https://jobs.usu.edu (Req. ID 051575). Details about requirements for the application process are explained on this site. A Quick Link for applicants is:

http://jobs.usu.edu/applicants/Central?quickFind=53822

Review of applications begins January 12, 2009, with the position open until filled. Email inquiries should be directed to jim.powell@usu.edu.




Posted 11/26/08

Postdoc Opportunity
Pacific Biological Station, British Columbia

Genomics Tools for Fisheries Management

Applications are invited for an exciting, multidisciplinary postdoctoral fellowship to develop novel, quantitative approaches for integrating genomics, physiology, environmental and fisheries data into Pacific salmon management models.

The successful candidate must hold a PhD in quantitative fisheries or ecological modeling, and have a strong background in parameter estimation, Bayesian statistics, and programming with ADMB, R, or an equivalent language. Applicants should be creative and demonstrate how their previous research has helped develop or refine conceptual or applied fisheries management tools. In addition, valuable assets include previous experience with stock assessment of Pacific salmon; knowledge of epidemiology, salmon life histories, fish physiology, oceanography, climate change impacts in the northeast Pacific, or the socio-economic dimensions of fisheries management; and experience with bioinformatics or database management.

The researcher must have a demonstrated ability to work effectively within a multidisciplinary team, and communicate their research through publications and oral presentations to audiences with a quantitative fisheries or ecology background. This Genome BC-funded project "Genomics Tools for Fisheries Management" http://www.genomebc.ca/genomics_programs/research_projects/agip/fisheries_management.htm is led by a highly collaborative team based at the Pacific Biological Station (Kristi-Miller Saunders, Janelle Curtis) and the University of British Columbia (Anthony Farrell, Scott Hinch, Paul Pavlidis, Paul Wood). Our team also works closely with colleagues at the Pacific Salmon Commission, Fisheries and Oceans Canada (DFO), Carleton University and the National Oceanic and Atmospheric Administration (NOAA). Responsibilities of the postdoctoral fellow will include developing and evaluating novel approaches for incorporating genomics information into pre-season forecast and in-season management adjustment models for wild Pacific salmon stocks. The postdoctoral fellow will have opportunities to work closely with several other postdoctoral fellows and PhD students working on the genomics, physiology, bioinformatics, and social sciences aspects of this 3-year project. For some background on this long-term collaborative research program, see Cooke SJ, Hinch SG, Farrell AP, et al. 2008. Developing a mechanistic understanding of fish migrations by linking telemetry with physiology, behaviour, genomics and experimental biology: an interdisciplinary case study on adult Fraser River sockeye salmon. Fisheries 33: 321-338.

Funding for this position is available for 2 years, starting in June 2008. Qualified applicants will be invited to submit applications for a Visiting Fellowship (VF) from the Natural Sciences and Engineering Research Council of Canada (NSERC). For more information on eligibility and the NSERC VF application process, please visit the following websites:

http://www.nserc.ca/sf_e.asp?nav=vfaward&lbi=award_toc
http://www.nserc.gc.ca/sf_e.asp?nav=sfnav&lbi=3d
http://www.nserc.gc.ca/sf_e.asp?nav=vfnav&lbi=elig
http://www.nserc.ca/forms/instructions/200/e.asp

To express interest or apply for this position, please send a cover letter, CV, and the names and contact information for three referees to Janelle Curtis (email: janelle.curtis@dfo-mpo.gc.ca; fax: 250-756-7053). Review of applications will begin 30 November 2008 and continue until the position is filled.




Posted 11/26/08

Postdoctoral Positions
University of New South Wales

The Complex Systems in Biology Group at the University of new South Wales is seeking applicants for two positions as post-doctoral fellow. The group works in INFECTION and IMMUNITY, and the projects offer a variety of areas from ODE modelling, simulation, biostatistics, bioinformatics etc. The applicant should have a PhD in mathematics / physics / computer science / engineering or related discipline.

The Complex Systems in Biology Group is within the Faculty of Medicine, and currently comprises two post-docs, four PhD students, and two research assistants. It works closely with experimental collaborators to analyse and model experimental data in infection and immunity. The group has a strong history of retraining physicists / mathematicians to work in mathematical biology, and welcomes applicants with no background in biology if they have a strong publication record in their own discipline. The group currently holds seven grants and has published 14 papers in 2008, and is looking for enthusiastic post-docs to join the team. The University is well situated close to the city and within 1 km of the beaches. The positions are available to 31 December 2010, pending further funding. Further details of the group are available at: http://www.cvr.net.au/research/complex.htm

Full details of the position will be published on the UNSW website http://www.unsw.edu.au/ , and formal applications must be through this site.




Posted 11/18/08

Head: Modelling & Economics Unit
Centre for Infections, Colindale

Job title:    Head of the Modelling and Economics Unit
Division:    Centre for Infections, Colindale
Department:    Biological Mathematics and Informatics Department
Salary:    £56,163-£68,274 pa
Grade:    AFC 8c
Location:    Colindale, NW London
Date:    27/11/2008
Interview Date:    12/12/2008

The Health Protection Agency (HPA) is an independent body that protects the health and well-being of everyone in England and Wales. The Agency plays a critical role in protecting people from infectious diseases and in preventing harm when hazards involving chemicals, poisons or radiation occur. We also prepare for new and emerging threats, such as a bio-terrorist attack or virulent new strains of pathogens.

The Centre is seeking to appoint a high calibre Head of the Modelling and Economic Unit. The Unit consists of a small core team of talented staff who together in collaboration with staff within and outside the Centre provide outputs that are crucial in informing national policy regarding the effectiveness and cost-effectiveness of planned interventions aimed at controlling infectious disease. The successful candidate will provide leadership and support for the work currently being undertaken within the Unit and have a remit to expand the modelling and economic activities for those infectious diseases that are currently not provided for.

This post would suit either a health economist or a mathematical modeller, the successful candidate will be expected to have a national or international reputation in one of these disciplines.

The Centre for Infections at Colindale, NW London is an internationally renowned centre of excellence for expertise, reference microbiology, research, surveillance and epidemiology in relation to human health, working directly and indirectly at the local, regional, national and international level. The modern purpose built centre is well equipped and provides excellent Library, Occupational Health and Refectory facilities. There is also a Nursery and Gym on site.

For an informal discussion please contact Andre Charlett on 0208 327 7700

The Health Protection Agency is an equal opportunities employer.

Further details and a job description:
http://www.jobs.nhs.uk/cgi-bin/vacdetails.cgi?selection=912130319




Posted 11/18/08

Tenure-track Positions: Computational Biology
University of Colorado at Boulder

The University of Colorado at Boulder invites applications for two tenure-track faculty positions in the broad areas of computational biology and bioinformatics, under the auspices of the Colorado Initiative in Molecular Biotechnology (cimb.colorado.edu). Individuals with interests in developing and applying computational or mathematical methods to biological systems are encouraged to apply.

CIMB is a program that integrates faculty from the departments of Applied Mathematics; Chemical & Biological Engineering; Chemistry & Biochemistry; Computer Science; Ecology and Evolutionary Biology; Integrative Physiology; Mechanical Engineering; Molecular, Cellular & Developmental Biology; and Physics. A successful candidate may be rostered in any one of these departments. The positions are at the Assistant Professor level, although outstanding senior candidates at higher ranks may be considered. Candidates must have a Ph.D. degree and a demonstrated commitment to teaching at undergraduate and graduate levels, and will be expected to develop an internationally recognized research program.

Applicants should submit a curriculum vitae, statements of research and teaching interests, and arrange to have three letters of reference electronically to: ttps://www.jobsatcu.com, posting #805756. Review of applications will begin on or about December 1, 2008 and will continue until the position is filled. For more information or assistance in submission of materials, contact Janice McClintock (Janice.Mcclintock@colorado.edu). The University of Colorado is sensitive to the needs of dual career couples, and is committed to diversity and equality in education and employment. See http://www.Colorado.edu/ArtsSciences/Jobs/ for full job description.




Posted 11/18/08

Tenure-track Position: Applied Mathematics
University of Colorado at Boulder

Posting Description: The Department of Applied Mathematics is seeking to fill the full-time tenure-track position of Assistant Professor of Applied Mathematics to begin August 2009. The Department of Applied Mathematics strives to provide excellent teaching, research, and service to the university community and to the world in the application of mathematics to other disciplines. Areas of research expertise within the department include Analysis, Computational Mathematics, Dynamical Systems, Mathematical Biology, Nonlinear Phenomena, Physical Applied Mathematics, Statistics and Applied Probability. For more information see http://amath.colorado.edu/.

Job Responsibilities: The teaching load in the Department of Applied Mathematics is three courses per academic year. Faculty members are expected to teach both undergraduate and graduate courses. Equal weight is placed on research and teaching. Required Qualifications: A Ph.D. in Applied Mathematics or related discipline is required.

Preferred Qualifications: Preference is given to candidates with outstanding research and teaching records and whose portfolio combines Applied Mathematics with Analysis, Computational Mathematics, Geosciences, or Mathematical Biology. However, outstanding candidates with research potential in any Applied Mathematics discipline will be considered. Post Ph.D. academic training is highly desired. Strong written and oral communication skills and excellent interpersonal skills are required.

Special Instructions to Applicants: Letters of recommendation are accepted at jobsatcu.com and mathjobs.org (minimum of three are required - at least one should address applicant's teaching). The cover letter should be the AMS Standard Cover Sheet (http://www.ams.org/employment/covertemplate.doc). Other required documents include a statement of research, a statement on teaching, and a list of references.

Job Posting Contact:
Tom Manteuffel
Telephone: 303-492-5199
Email: tmanteuf@colorado.edu
Job Posting Number: 805412




Posted 11/18/08

Postdoc Position: Modeling Complex Microbial Systems
University of Guelph

We invite applications for a Postdoc Position at the University of Guelph in "Mathematical modeling of complex microbial communities" as part of an interdisciplinary research project with government scientists (Health Canada; Agriculture and Agrifood Research Canada), pending on final approval of funds. The begin of the project is to some extent negotiable, with a preference on early 2009.

The incumbent should possess:

The postdoctoral fellow will join the Computational Biomathematics Laboratory (lead by Dr Hermann J Eberl, Assoc. Prof and Canada Research Chair) within the Department of Mathematics and Statistics. The research group currently is composed of one faculty, one postdoctoral fellow, and eight graduate students. The main research area of the group is mathematical modeling of microbial systems; other currently active research areas are modeling in apiculture, forest dynamics, and social dynamics. For more information see http://www.uoguelph.ca/~heberl

Guelph is located centrally in Southern Ontario, about one hour west of Toronto. The University of Guelph is Canada's leading comprehensive research university with a long tradition in the Life Sciences. Biomathematics and Statistics is the largest research area in the Dept. of Mathematics and Statistics with currently about 10 research active faculty and 25 grad students.

Interested individuals are invited to send their electronic application (pdf or ps format preferred) to Dr. Hermann J Eberl at heberl@uoguelph.ca, to whom also informal inquiries can be directed. An application should include: