Department of Bioinformatics and Computational Biology  George Mason University

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Publications in 2004

Note: Faculty authors are listed in bold font. Student authors are listed in italics.
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Al-Timimi A, and Jamison DC (2004): Knowledge Discovery in a Microarray Data Warehouse. IEEE. Las Vegas, NV, pp. 831-836.

Alkharouf N, Khan R, and Matthews B (2004): Analysis of expressed sequence tags from roots of resistant soybean infected by the soybean cyst nematode. Genome 47, 380-388.

Alkharouf NW, and Matthews BF (2004): SGMD: the Soybean Genomics and Microarray Database. Nucleic Acids Res 32 Database issue, D398-400.

Bostick DL, Shen M, and Vaisman I (2004): A simple topological representation of protein structure: implications for new, fast, and robust structural classification. Proteins 56, 487-501.

Celamkoti S, Kundeti S, Purkayastha A, Mazumder R, Buck C, and Seto D (2004): GeneOrder3.0: software for comparing the order of genes in pairs of small bacterial genomes. BMC Bioinformatics 5, 52.

da Mota AF, Sonstegard TS, Van Tassell CP, Shade LL, Matukumalli LK, Wood DL, Capuco AV, Brito MA, Connor EE, Martinez ML, and Coutinho LL (2004): Characterization of open reading frame-expressed sequence tags generated from Bos indicus and B. taurus mammary gland cDNA libraries. Anim Genet 35, 213-219.

Diggans J, and Solka JL (2004): Cluster Subspace Identification Via Conditional Entrophy Calculation. Interface 2004: Computational Biology and Bioinformatics 36th Symposium on the Interface. Baltimore, MD.

Ekblad U, and Kinser JM (2004): Theoretical Foundation of the Intersecting Cortical Model and its Use for Change Detection of Aircraft, Cars and Nuclear Explosion Tests. Signal Processing 84, 1131-1146.

Ekblad U, Kinser JM, Atmer J, and Zetterlund N (2004): The Intersecting Cortical Model in Image Processing. Nuclear Inst. and Methods in Physics Research 525, 392-396.

Grant GM, Fortney A, Gorreta F, Estep M, Del Giacco L, Van Meter A, Christensen A, Appalla L, Naouar C, Jamison C, Al-Timimi A, Donovan J, Cooper J, Garrett C, and Chandhoke V (2004): Microarrays in cancer research. Anticancer Res 24, 441-448.

Jafri MS, and Yang K-H (2004): Modeling Neuronal Calcium, pp. 75-95. In J Feng (Ed.): Computational Neuroscience: A Comprehensive Approach, CRC Press.

Jamison DC (2004): Microarray basics. Heredity 92, 475.

Johannsen DA, Wegman EJ, Solka JL, and Priebe CE (2004): Simultaneous Selection of Features and Metric for Optimal Nearest Neighbor Classification. Communications in Statistics Theory and Methods 33, 57-92.

Kahn R, Alkharouf N, Beard H, MacDonald M, Couikha I, Meyer S, Grefenstette J, Knap H, and Matthews B (2004): Microarray analysis of gene expression in soybean roots susceptible to the soybean cyst nematode two days post invasion. Journal of Nematology 36, 241-248.

Kinser JM (2004): Accelerated Queries of Time Series Database. Pattern Recognition 37, 1691-1698.

Kinser JM, and Wang G (2004): Texture recognition of medical images with the ICM method. Nuclear Inst. and Methods in Physics Research 525, 387-391.

Klimov DK, Straub JE, and Thirumalai D (2004): Aqueous urea solution destabilizes Abeta(16-22) oligomers. Proc Natl Acad Sci U S A 101, 14760-14765.

Klimov DK, and Thirumalai D (2004): Progressing from folding trajectories to transition state ensemble in proteins. Chem. Phys. 307, 251-258.

Lauer KP, Llorente I, Blair E, Seto J, Krasnov V, Purkayastha A, Ditty SE, Hadfield TL, Buck C, Tibbetts C, and Seto D (2004): Natural variation among human adenoviruses: genome sequence and annotation of human adenovirus serotype 1. J Gen Virol 85, 2615-2625.

Lee JK, Laudeman T, Kanter J, James T, Siadaty MS, Knaus WA, Prorok A, Bao Y, Freeman B, Puiu D, Wen LM, Buck GA, Schlauch K, Weller J, and Fox JW (2004): GeneX Va: VBC open source microarray database and analysis software. Biotechniques 36, 634-638, 640, 642.

Li MS, Klimov DK, and Thirumalai D (2004): Finite size effects on thermal denaturation of globular proteins. Phys Rev Lett 93, 268107.

Masso M (2004): Peer review of adverse events - a perspective on Macarthur. Aust Health Rev 28, 26-33.

Matukumalli LK, Grefenstette JJ, Sonstegard TS, and Van Tassell CP (2004): EST-PAGE--managing and analyzing EST data. Bioinformatics 20, 286-288.

Rigsby JT, and Solka JL (2004): Social Network Models and Allegiance. Joint Statistical Meeting 2004. Toronto Canada.

Rigsby JT, and Solka JL (2004): Actor Allegiance and Blockmodel Strength. Interface 2004: Computational Biology and Bioinformatics 36th Symposium on the Interface. Baltimore, MD.

Smith E, and Morowitz HJ (2004): Universality in intermediary metabolism. Proc Natl Acad Sci U S A 101, 13168-13173.

Solka JL, Adams ML, and Wegman EJ (2004): Man vs. machine - A study of the ability of statistical methodologies to discern human generated ssh traffic from machine generated scp traffic. In WWS Chen (Ed.): Statistical Methods In Computer Security, Marcel Dekker.

Solka JL, Bryant AC, and Wegman EJ (2004): Identifying Cross Corpora Document Associations Via Minimal Spanning Trees. Interface 2004: Computational Biology and Bioinformatics 36th Symposium on the Interface. Baltimore, MD.

Solka JL, Marchette DJ, and Wegman EJ (2004): Computing Science and Statistics: Proceedings of the 36th Symposia on the Interface, Interface Foundation of North America, Fairfax Station.

Solka JL, and Martinez WL (2004): A Mixture-based Approach to Latent Class Discovery. Joint Statistical Meeting 2004. Tornoto, Canada.

Solka JL, and Martinez WL (2004): Model-based Clustering with an Adaptive Mixtures Smart Start. Interface 2004: Computational Biology and Bioinformatics 36th Symposium on the Interface. Baltimore, MD.

Vaisman II (2004): Statistical and Computational Geometry of Biomolecular Structure, pp. 981-1000. In J Gentle, Hardle, W, Mori, Y. (Ed.): Handbook of Computational Statistics, Springer, Berlin ; New York.

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