Design
and Implementation of Bioinformatics Databases
BINF 8211/BINF 6211
UNCC
Spring 2008
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Syllabus
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Grading:
-Homework 25% (5% each assingment the lowest of the six assignments
will be dropped
-Midterm exam 20% (Comprehensive, closed book, closed notes in class)
-Final exam 25% (Comprehensive, closed book, closed notes in class)
-Final Project Report 15%
-Project Presentation 15%
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•Project:
- Construct
a database that supports scientific research, that uses
multiple-probe-per-gene microarrays (such as Affymetrix and NimbleGen),
and demonstrate its utility for answering 5 interesting scientific
questions that require at least 2-table joins.
- You
will need to develop the use cases of interest, then model the data and
then construct a relational schema that supports the queries you have
formulated.
- You
are to instantiate your database, populate it with real data, at least
some of which is from a public data repository, and then formulate and
process the queries in the database and retrieve the results. You must
indicate how you have validated the data input and the retrieval
results.
- Produce
a Final Report that includes :
- Work
flow, Process flow and Data Models, represented as diagrams
- Schema
Instantiation scripts and table population scripts Queries
- Any
interface you develop for handling them (SQL, not a Web interface
unless you want to do this)
- The
write up should be structured as a research article, document the
stages and discuss the problems you ran into with your approach,
compare it to others you found in researching the topic
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Presentation:
- Briefly
describe the use cases, show the schema, and then demonstrate the
functionality to the class in a ‘live’ presentation
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Course Schedule
Updated 3.9.08
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Software
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| This site was designed and maintained by
Dr. Andrew Carr. Jan 09, 2008 |
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