\ Syllabus  
George Mason University 
School of Systems Biology 
Fall 2017 
BINF731. Protein Structure Analysis 

Thursday, 4:30-7:10 pm
Occoquan Building, Room 304B
3 credits

Instructor: Iosif Vaisman
Office: OB, Room 312B
Office Hours: By appointment
Phone: 703-993-8431

Course description: Review of computational methods for the analysis, classification and prediction of three-dimensional protein structures. The course covers theoretical approaches, techniques and computational tools for protein structure analysis. The topics also include protein geometry and topology, 3D structure databases, protein modeling and engineering.

Course Requirements: The course will include two project assignments and a final exam.

Grading: grades will be based on the project assignments (66%) and final exam (34%).

Course outline

Lecture 1
Lecture 2
Lecture 3
Lecture 4
Lecture 5
Lecture 6
Lecture 7
Lecture 8
Lecture 9
Lecture 10
Lecture 11
Lecture 12
Lecture 13

Assignment 1

Recommended books
Course reading materials
Exercises
 

Sample HTML code
Jmol tutorial (by Andy Hoang)